Wall clock time and date at job start Mon Mar 30 2020 20:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47552 * 2 1 4 4 C 1.50702 * 109.47215 * 240.00313 * 2 1 3 5 5 H 1.07992 * 120.00239 * 240.00222 * 4 2 1 6 6 C 1.37877 * 119.99794 * 60.00268 * 4 2 1 7 7 N 1.31517 * 120.00290 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99944 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47463 * 89.99708 * 8 6 4 10 10 H 1.48499 * 109.47375 * 210.00030 * 8 6 4 11 11 H 1.48507 * 109.47096 * 329.99528 * 8 6 4 12 12 N 1.46897 * 109.46972 * 120.00591 * 2 1 3 13 13 C 1.47015 * 110.99783 * 176.36614 * 12 2 1 14 14 C 1.53103 * 109.25538 * 182.38968 * 13 12 2 15 15 O 1.43016 * 109.25809 * 303.14858 * 14 13 12 16 16 C 1.43103 * 113.76264 * 58.67404 * 15 14 13 17 17 H 1.09008 * 109.49771 * 61.25178 * 16 15 14 18 18 C 1.52997 * 109.56972 * 181.41583 * 16 15 14 19 19 O 1.42907 * 109.46713 * 294.75849 * 18 16 15 20 20 C 1.47016 * 110.99785 * 299.99542 * 12 2 1 21 21 H 1.09001 * 109.47561 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47157 * 300.00057 * 1 2 3 23 23 H 1.09008 * 109.46890 * 59.99503 * 1 2 3 24 24 H 0.96997 * 119.99874 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.50639 * 302.32307 * 13 12 2 26 26 H 1.08995 * 109.50980 * 62.45590 * 13 12 2 27 27 H 1.08998 * 109.50794 * 63.08655 * 14 13 12 28 28 H 1.09002 * 109.50553 * 183.16904 * 14 13 12 29 29 H 1.09001 * 109.46853 * 54.75104 * 18 16 15 30 30 H 1.08994 * 109.47462 * 174.75998 * 18 16 15 31 31 H 0.96698 * 113.99854 * 179.97438 * 19 18 16 32 32 H 1.09002 * 109.50934 * 297.54561 * 20 12 2 33 33 H 1.09003 * 109.50733 * 57.63155 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8299 -2.6034 8 14 2.3214 -1.1200 -4.0080 9 1 1.3428 -2.1613 -4.4121 10 1 2.4867 -0.1410 -5.1123 11 1 3.6294 -1.7581 -3.7123 12 7 2.0196 -0.6926 1.1993 13 6 3.4866 -0.7880 1.1906 14 6 3.9493 -1.5668 2.4248 15 8 3.4557 -0.9219 3.6020 16 6 2.0295 -0.8121 3.6444 17 1 1.5875 -1.8085 3.6336 18 6 1.6096 -0.0798 4.9204 19 8 1.9561 -0.8705 6.0593 20 6 1.5482 -0.0260 2.4220 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5140 -0.8900 24 1 0.7088 1.1615 -3.4843 25 1 3.8122 -1.3074 0.2893 26 1 3.9166 0.2133 1.2098 27 1 3.5631 -2.5851 2.3786 28 1 5.0387 -1.5917 2.4522 29 1 2.1237 0.8798 4.9745 30 1 0.5323 0.0853 4.9069 31 1 1.7189 -0.4667 6.9053 32 1 1.9473 0.9876 2.4609 33 1 0.4589 0.0116 2.4192 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226791220.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:17 Heat of formation + Delta-G solvation = -113.358981 kcal Electronic energy + Delta-G solvation = -15243.576207 eV Core-core repulsion = 12689.484432 eV Total energy + Delta-G solvation = -2554.091775 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.68116 -37.85708 -37.07751 -34.62872 -32.87759 -31.42408 -28.29049 -27.54790 -25.77254 -23.54348 -22.01684 -21.18955 -18.52942 -18.16657 -17.50511 -17.45752 -16.36355 -16.06847 -15.76285 -15.38141 -15.02349 -14.71966 -14.41438 -13.81857 -13.52333 -13.07176 -12.92046 -12.63236 -12.54199 -12.30546 -12.17115 -11.98935 -11.95497 -11.39180 -10.95583 -10.92550 -10.54719 -10.49589 -9.08579 -8.14330 -6.26693 1.42119 1.42954 1.52907 2.40032 2.76872 2.96949 3.14847 3.47856 4.00700 4.09536 4.18680 4.25924 4.32732 4.45293 4.53852 4.61060 4.62053 4.79249 4.93890 4.96229 4.99244 5.06676 5.15850 5.44807 5.67433 5.72227 6.17310 6.21920 6.27665 6.61095 6.85974 6.94843 7.42621 8.91932 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.054037 B = 0.007699 C = 0.006966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.035253 B = 3635.916051 C = 4018.833796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.216 3.784 3 H -0.038 1.038 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.962 3.038 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.268 1.268 12 N -0.538 5.538 13 C 0.028 3.972 14 C 0.070 3.930 15 O -0.393 6.393 16 C 0.094 3.906 17 H 0.062 0.938 18 C 0.091 3.909 19 O -0.585 6.585 20 C 0.026 3.974 21 H 0.033 0.967 22 H 0.033 0.967 23 H 0.062 0.938 24 H 0.262 0.738 25 H 0.083 0.917 26 H 0.016 0.984 27 H 0.057 0.943 28 H 0.117 0.883 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.399 0.601 32 H 0.024 0.976 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.342 -1.721 11.892 12.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.109 3.891 3 H -0.020 1.020 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.788 3.212 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.192 1.192 12 N -0.264 5.264 13 C -0.100 4.100 14 C -0.007 4.007 15 O -0.312 6.312 16 C 0.036 3.964 17 H 0.080 0.920 18 C 0.013 3.987 19 O -0.394 6.394 20 C -0.102 4.102 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.101 0.899 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.135 0.865 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.249 0.751 32 H 0.043 0.957 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.410 -2.409 11.438 11.774 hybrid contribution 0.118 1.021 -0.985 1.424 sum 1.528 -1.387 10.453 10.655 Atomic orbital electron populations 1.21663 0.96863 0.99462 1.00006 1.19087 0.92975 0.90107 0.86905 1.02030 1.21405 1.31427 1.12405 0.90851 0.92106 1.25727 0.95294 0.95719 1.01965 1.70015 1.37658 1.24132 1.24177 0.85490 0.78898 0.78189 0.78662 1.20079 1.20967 1.19201 1.62298 1.09464 1.52386 1.02208 1.22651 0.88739 0.98801 0.99842 1.22757 0.99962 0.95211 0.82723 1.87943 1.21273 1.80400 1.41605 1.22223 0.81562 0.99079 0.93509 0.91995 1.22088 0.99796 0.93016 0.83797 1.86476 1.86165 1.49321 1.17421 1.22683 1.01607 0.95392 0.90545 0.94793 0.94795 0.91960 0.92842 0.89904 0.96602 0.92445 0.86502 0.92445 0.89507 0.75064 0.95735 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.94 8.74 71.98 0.63 -5.31 16 2 C 0.22 11.12 2.06 44.17 0.09 11.21 16 3 H -0.04 -2.18 8.14 -2.39 -0.02 -2.20 16 4 C -0.52 -28.76 7.90 25.60 0.20 -28.55 16 5 H 0.06 3.31 6.42 -2.91 -0.02 3.29 16 6 C 0.01 0.65 5.30 84.65 0.45 1.10 16 7 N -0.92 -52.84 11.32 21.45 0.24 -52.60 16 8 Si 0.96 43.41 29.54 68.60 2.03 45.43 16 9 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 12 N -0.54 -23.61 4.59 -874.35 -4.01 -27.62 16 13 C 0.03 1.14 5.36 86.32 0.46 1.60 16 14 C 0.07 2.34 7.01 72.02 0.50 2.84 16 15 O -0.39 -13.86 10.44 -144.86 -1.51 -15.38 16 16 C 0.09 3.06 3.09 30.63 0.09 3.15 16 17 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 18 C 0.09 2.22 6.72 71.98 0.48 2.70 16 19 O -0.59 -13.96 13.63 -144.86 -1.97 -15.94 16 20 C 0.03 0.97 4.62 86.32 0.40 1.37 16 21 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.03 1.42 6.35 -2.39 -0.02 1.41 16 23 H 0.06 3.35 6.07 -2.38 -0.01 3.33 16 24 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 25 H 0.08 3.53 6.18 -2.39 -0.01 3.51 16 26 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.40 4.93 9.12 -74.06 -0.68 4.26 16 32 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 3.17 6.18 -2.39 -0.01 3.16 16 Total: -1.00 -65.27 263.54 -1.49 -66.77 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 0.42 Total: 9.23 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 3.31 Total: -9.89 kcal Atomic # 7 Polarization: -76.45 SS G_CDS: -3.77 Total: -80.22 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -3.49 Total: -31.31 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -65.27 -1.49 -66.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226791220.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.594 kcal (2) G-P(sol) polarization free energy of solvation -65.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds