Wall clock time and date at job start Mon Mar 30 2020 20:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81395 * 103.00208 * 2 1 4 4 H 1.08998 * 109.47380 * 54.99520 * 3 2 1 5 5 C 1.52998 * 109.46991 * 294.99845 * 3 2 1 6 6 C 1.53001 * 109.47375 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47301 * 59.99564 * 6 5 3 8 8 C 1.52998 * 109.47262 * 300.00505 * 7 6 5 9 9 H 1.08990 * 109.47173 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.46843 * 299.99980 * 8 7 6 11 11 C 1.36935 * 119.99926 * 274.99989 * 10 8 7 12 12 H 1.08005 * 119.99877 * 359.97438 * 11 10 8 13 13 C 1.38811 * 120.00369 * 179.73019 * 11 10 8 14 14 N 1.31614 * 120.00468 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99699 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47209 * 90.00536 * 15 13 11 17 17 H 1.48506 * 109.47294 * 210.00384 * 15 13 11 18 18 H 1.48501 * 109.47275 * 330.00287 * 15 13 11 19 19 C 1.52997 * 109.47601 * 174.99832 * 3 2 1 20 20 H 1.09000 * 109.47347 * 300.00705 * 1 2 3 21 21 H 1.09007 * 109.47341 * 60.00323 * 1 2 3 22 22 H 1.09001 * 109.47497 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47599 * 60.00040 * 5 3 2 24 24 H 1.09007 * 109.47334 * 299.99811 * 5 3 2 25 25 H 1.09007 * 109.46838 * 299.99599 * 6 5 3 26 26 H 1.09002 * 109.47302 * 180.02562 * 6 5 3 27 27 H 1.08997 * 109.47231 * 179.97438 * 7 6 5 28 28 H 1.08998 * 109.46631 * 60.00529 * 7 6 5 29 29 H 0.97005 * 120.00261 * 95.00113 * 10 8 7 30 30 H 0.97000 * 120.00663 * 179.97438 * 14 13 11 31 31 H 1.09007 * 109.47222 * 59.99612 * 19 3 2 32 32 H 1.09002 * 109.47087 * 300.00021 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7294 2.2541 0.8417 5 6 1.7428 2.4015 -1.3074 6 6 2.0876 3.8921 -1.3077 7 6 3.6026 4.0653 -1.1822 8 6 4.0818 3.4313 0.1252 9 1 5.1611 3.5542 0.2144 10 7 3.4201 4.0857 1.2565 11 6 3.9393 5.2401 1.7790 12 1 4.8369 5.6678 1.3573 13 6 3.3093 5.8633 2.8474 14 7 3.8080 6.9731 3.3493 15 14 1.7526 5.1276 3.5720 16 1 2.1116 4.1804 4.6579 17 1 0.9020 6.2131 4.1231 18 1 1.0065 4.4045 2.5110 19 6 3.7369 1.9412 0.1258 20 1 -0.3634 0.5139 0.8899 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 0.6636 2.2778 -1.3970 24 1 2.2355 1.9148 -2.1492 25 1 1.5952 4.3791 -0.4659 26 1 1.7458 4.3439 -2.2390 27 1 3.8482 5.1272 -1.1829 28 1 4.0948 3.5784 -2.0240 29 1 2.6141 3.7014 1.6356 30 1 3.3675 7.4088 4.0957 31 1 4.2296 1.4545 -0.7160 32 1 4.0784 1.4895 1.0572 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235114486.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:43 Heat of formation + Delta-G solvation = -24.491599 kcal Electronic energy + Delta-G solvation = -13119.329307 eV Core-core repulsion = 11011.843982 eV Total energy + Delta-G solvation = -2107.485325 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.88388 -35.58739 -33.24623 -31.73976 -30.62381 -29.47522 -25.37384 -23.58906 -23.23359 -20.02817 -19.88163 -17.47728 -16.56554 -16.21628 -16.14095 -15.34266 -15.07004 -14.61304 -14.37300 -14.20092 -14.03901 -13.77605 -13.10895 -12.97431 -12.73968 -12.64805 -12.34748 -12.16911 -11.84948 -11.64948 -11.42791 -11.17089 -10.85521 -10.62079 -9.28586 -8.67754 -8.02183 -5.33450 0.74525 1.31774 1.36119 1.42318 1.64950 2.46093 3.29313 3.57012 3.73000 3.78084 4.09563 4.26898 4.32380 4.35195 4.37602 4.48405 4.56406 4.68105 4.79830 4.86917 4.97758 5.07634 5.09669 5.27616 5.34675 5.50132 5.56819 5.80382 6.22580 7.08791 7.86099 8.04417 9.19848 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.032272 B = 0.010397 C = 0.008997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.403617 B = 2692.311121 C = 3111.237977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.298 6.298 3 C -0.042 4.042 4 H 0.063 0.937 5 C -0.099 4.099 6 C -0.108 4.108 7 C -0.129 4.129 8 C 0.176 3.824 9 H 0.049 0.951 10 N -0.746 5.746 11 C -0.221 4.221 12 H 0.059 0.941 13 C -0.064 4.064 14 N -0.985 5.985 15 Si 0.946 3.054 16 H -0.281 1.281 17 H -0.296 1.296 18 H -0.256 1.256 19 C -0.095 4.095 20 H 0.073 0.927 21 H 0.088 0.912 22 H 0.116 0.884 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.039 0.961 26 H 0.074 0.926 27 H 0.039 0.961 28 H 0.080 0.920 29 H 0.362 0.638 30 H 0.256 0.744 31 H 0.094 0.906 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.266 -13.995 -10.593 18.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S -0.070 6.070 3 C -0.170 4.170 4 H 0.082 0.918 5 C -0.138 4.138 6 C -0.147 4.147 7 C -0.169 4.169 8 C 0.067 3.933 9 H 0.067 0.933 10 N -0.391 5.391 11 C -0.352 4.352 12 H 0.077 0.923 13 C -0.255 4.255 14 N -0.636 5.636 15 Si 0.774 3.226 16 H -0.207 1.207 17 H -0.223 1.223 18 H -0.181 1.181 19 C -0.134 4.134 20 H 0.092 0.908 21 H 0.107 0.893 22 H 0.135 0.865 23 H 0.088 0.912 24 H 0.106 0.894 25 H 0.058 0.942 26 H 0.093 0.907 27 H 0.058 0.942 28 H 0.099 0.901 29 H 0.196 0.804 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.466 -14.772 -10.554 19.272 hybrid contribution -1.527 1.299 1.047 2.262 sum -7.993 -13.473 -9.507 18.325 Atomic orbital electron populations 1.23451 0.91851 1.07444 1.05508 1.86734 1.10174 1.12017 1.98030 1.23091 1.00174 0.92407 1.01348 0.91844 1.21781 1.01115 0.95221 0.95717 1.21399 0.96261 0.95763 1.01293 1.22020 0.96466 1.00215 0.98208 1.20428 0.95643 0.90331 0.86917 0.93254 1.42846 1.30773 1.27741 1.37711 1.19065 1.06749 0.99387 1.09997 0.92283 1.25397 1.02397 0.97946 0.99787 1.69866 1.43423 1.21474 1.28855 0.85545 0.80625 0.77548 0.78881 1.20698 1.22273 1.18065 1.21549 0.92746 0.96034 1.03095 0.90772 0.89262 0.86541 0.91187 0.89429 0.94206 0.90697 0.94212 0.90118 0.80391 0.93498 0.88772 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.10 10.45 113.37 1.18 -0.92 16 2 S -0.30 -7.49 21.79 -56.49 -1.23 -8.73 16 3 C -0.04 -1.17 2.48 30.59 0.08 -1.10 16 4 H 0.06 2.09 6.51 -2.39 -0.02 2.07 16 5 C -0.10 -2.42 5.11 30.59 0.16 -2.27 16 6 C -0.11 -3.15 5.77 30.60 0.18 -2.97 16 7 C -0.13 -4.16 5.61 30.59 0.17 -3.99 16 8 C 0.18 6.46 3.10 44.97 0.14 6.60 16 9 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 10 N -0.75 -34.25 4.08 -323.04 -1.32 -35.57 16 11 C -0.22 -12.51 10.41 84.03 0.87 -11.63 16 12 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 13 C -0.06 -3.80 5.50 84.86 0.47 -3.34 16 14 N -0.98 -63.59 13.97 21.65 0.30 -63.29 16 15 Si 0.95 46.03 27.73 68.60 1.90 47.94 16 16 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 17 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 18 H -0.26 -11.26 6.52 99.48 0.65 -10.61 16 19 C -0.09 -2.86 4.89 30.58 0.15 -2.71 16 20 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 21 H 0.09 1.43 7.14 -2.39 -0.02 1.41 16 22 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.07 1.51 6.92 -2.39 -0.02 1.50 16 24 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 25 H 0.04 1.41 7.60 -2.38 -0.02 1.39 16 26 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.36 16.23 3.93 -92.70 -0.36 15.86 16 30 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 31 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -65.42 263.31 3.71 -61.70 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.66 Total: 20.27 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: 3.40 Total: -22.32 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -1.02 Total: -98.86 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.90 Total: 47.94 kcal Atomic # 16 Polarization: -7.49 SS G_CDS: -1.23 Total: -8.73 kcal Total: -65.42 3.71 -61.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235114486.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.212 kcal (2) G-P(sol) polarization free energy of solvation -65.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds