Wall clock time and date at job start Mon Mar 30 2020 20:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.81396 * 103.00096 * 2 1 4 4 H 1.08996 * 109.47625 * 305.00333 * 3 2 1 5 5 C 1.53002 * 109.47197 * 64.99987 * 3 2 1 6 6 C 1.52997 * 109.47415 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.47164 * 300.00027 * 6 5 3 8 8 C 1.52999 * 109.46626 * 59.99702 * 7 6 5 9 9 H 1.09002 * 109.46719 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.47050 * 60.00640 * 8 7 6 11 11 C 1.36934 * 120.00211 * 84.99459 * 10 8 7 12 12 H 1.07991 * 120.00044 * 0.02562 * 11 10 8 13 13 C 1.38819 * 119.99701 * 179.97438 * 11 10 8 14 14 N 1.31614 * 119.99887 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99728 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47170 * 59.99946 * 15 13 11 17 17 H 1.48498 * 109.47050 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47145 * 300.00145 * 15 13 11 19 19 C 1.52996 * 109.47255 * 184.99930 * 3 2 1 20 20 H 1.09000 * 109.46479 * 300.00245 * 1 2 3 21 21 H 1.08995 * 109.46821 * 59.99367 * 1 2 3 22 22 H 1.08991 * 109.46980 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46986 * 59.99858 * 5 3 2 24 24 H 1.09001 * 109.47601 * 300.00581 * 5 3 2 25 25 H 1.09001 * 109.46922 * 180.02562 * 6 5 3 26 26 H 1.09000 * 109.47140 * 59.99976 * 6 5 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 7 6 5 28 28 H 1.09000 * 109.47050 * 300.00004 * 7 6 5 29 29 H 0.97007 * 119.99492 * 264.99349 * 10 8 7 30 30 H 0.97004 * 119.99922 * 179.97438 * 14 13 11 31 31 H 1.09000 * 109.47054 * 300.00219 * 19 3 2 32 32 H 1.09001 * 109.46997 * 59.99952 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7296 2.2542 -0.8417 5 6 1.7429 2.4016 1.3074 6 6 2.0876 3.8922 1.3077 7 6 3.6027 4.0653 1.1823 8 6 4.0819 3.4312 -0.1251 9 1 5.1613 3.5541 -0.2142 10 7 3.4203 4.0858 -1.2565 11 6 3.9396 5.2401 -1.7790 12 1 4.8371 5.6677 -1.3573 13 6 3.3129 5.8599 -2.8514 14 7 2.2200 5.3378 -3.3663 15 14 4.0218 7.4342 -3.5647 16 1 5.4007 7.1793 -4.0533 17 1 3.1728 7.8924 -4.6936 18 1 4.0551 8.4828 -2.5136 19 6 3.7370 1.9411 -0.1257 20 1 -0.3632 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 2.2355 1.9149 2.1492 24 1 0.6637 2.2778 1.3971 25 1 1.7466 4.3438 2.2393 26 1 1.5954 4.3791 0.4659 27 1 3.8483 5.1272 1.1830 28 1 4.0949 3.5784 2.0241 29 1 2.6143 3.7014 -1.6356 30 1 1.7819 5.7712 -4.1155 31 1 4.2296 1.4545 0.7161 32 1 4.0785 1.4894 -1.0571 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235217268.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:48 Heat of formation + Delta-G solvation = -27.156651 kcal Electronic energy + Delta-G solvation = -13033.570518 eV Core-core repulsion = 10925.969628 eV Total energy + Delta-G solvation = -2107.600890 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.05 seconds Orbital eigenvalues (eV) -39.76014 -35.49082 -32.91933 -31.68974 -30.25101 -29.33292 -25.67448 -23.54535 -23.16938 -20.05076 -19.27133 -17.38415 -16.63077 -16.18250 -15.79724 -15.33260 -15.17751 -14.68388 -14.33696 -14.00464 -13.78581 -13.44292 -13.03646 -12.82239 -12.66187 -12.63007 -12.40435 -12.19499 -11.81302 -11.59641 -11.32543 -11.10097 -10.80360 -10.57685 -8.95872 -8.64745 -7.91766 -5.18403 0.79348 1.47181 1.49571 1.55415 1.68277 2.57760 3.41539 3.72658 3.78377 4.03977 4.16148 4.30342 4.36193 4.37747 4.44777 4.54533 4.61025 4.71743 4.83544 4.88968 5.03566 5.09535 5.15413 5.32865 5.38139 5.50853 5.56311 5.66128 6.30849 7.37077 8.14638 8.37749 9.31693 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.040369 B = 0.008329 C = 0.007716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.435822 B = 3360.773414 C = 3628.170753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.303 6.303 3 C -0.034 4.034 4 H 0.060 0.940 5 C -0.096 4.096 6 C -0.105 4.105 7 C -0.128 4.128 8 C 0.171 3.829 9 H 0.047 0.953 10 N -0.731 5.731 11 C -0.235 4.235 12 H 0.075 0.925 13 C -0.077 4.077 14 N -0.970 5.970 15 Si 0.969 3.031 16 H -0.280 1.280 17 H -0.298 1.298 18 H -0.279 1.279 19 C -0.092 4.092 20 H 0.088 0.912 21 H 0.070 0.930 22 H 0.117 0.883 23 H 0.086 0.914 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.036 0.964 27 H 0.042 0.958 28 H 0.078 0.922 29 H 0.372 0.628 30 H 0.249 0.751 31 H 0.090 0.910 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.683 -8.153 10.556 13.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.074 6.074 3 C -0.163 4.163 4 H 0.079 0.921 5 C -0.136 4.136 6 C -0.145 4.145 7 C -0.167 4.167 8 C 0.061 3.939 9 H 0.065 0.935 10 N -0.372 5.372 11 C -0.367 4.367 12 H 0.093 0.907 13 C -0.269 4.269 14 N -0.622 5.622 15 Si 0.798 3.202 16 H -0.206 1.206 17 H -0.224 1.224 18 H -0.205 1.205 19 C -0.131 4.131 20 H 0.107 0.893 21 H 0.089 0.911 22 H 0.135 0.865 23 H 0.104 0.896 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.205 0.795 30 H 0.057 0.943 31 H 0.109 0.891 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.903 -8.953 10.507 13.833 hybrid contribution -0.920 1.916 -1.072 2.381 sum -1.823 -7.037 9.434 11.910 Atomic orbital electron populations 1.23420 0.91858 1.07346 1.05380 1.86619 1.10231 1.12538 1.98033 1.23011 1.00125 0.91949 1.01208 0.92134 1.21745 1.00842 0.95372 0.95611 1.21359 0.96559 0.95619 1.00944 1.22036 0.96206 1.00235 0.98273 1.20460 0.95463 0.90291 0.87638 0.93481 1.42648 1.30983 1.27427 1.36142 1.19604 1.06653 1.00507 1.09946 0.90741 1.25478 0.98616 1.02648 1.00127 1.69805 1.21928 1.42520 1.27916 0.85277 0.77316 0.80069 0.77510 1.20612 1.22447 1.20543 1.21507 0.92738 0.96559 1.02325 0.89316 0.91051 0.86473 0.89563 0.91588 0.90923 0.94491 0.93920 0.90367 0.79453 0.94260 0.89144 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.45 10.45 113.37 1.19 -1.27 16 2 S -0.30 -8.69 21.79 -56.49 -1.23 -9.92 16 3 C -0.03 -1.11 2.48 30.59 0.08 -1.03 16 4 H 0.06 2.38 6.51 -2.39 -0.02 2.37 16 5 C -0.10 -2.68 5.11 30.59 0.16 -2.53 16 6 C -0.11 -3.39 5.77 30.60 0.18 -3.21 16 7 C -0.13 -4.29 5.61 30.60 0.17 -4.12 16 8 C 0.17 6.65 3.10 44.97 0.14 6.79 16 9 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 10 N -0.73 -36.32 4.28 -323.02 -1.38 -37.70 16 11 C -0.24 -12.99 9.93 84.04 0.83 -12.15 16 12 H 0.07 3.95 7.83 -2.92 -0.02 3.93 16 13 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 14 N -0.97 -59.58 13.06 21.65 0.28 -59.30 16 15 Si 0.97 46.45 29.55 68.60 2.03 48.47 16 16 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 17 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 19 C -0.09 -3.09 4.89 30.57 0.15 -2.94 16 20 H 0.09 1.72 7.14 -2.39 -0.02 1.70 16 21 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.12 2.05 8.14 -2.40 -0.02 2.03 16 23 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.07 1.68 6.92 -2.39 -0.02 1.66 16 25 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.04 1.48 7.60 -2.39 -0.02 1.46 16 27 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 28 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.37 19.98 6.06 -92.70 -0.56 19.41 16 30 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 31 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -62.22 266.43 3.58 -58.64 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.52 Total: 24.21 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 3.36 Total: -24.40 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -1.10 Total: -97.00 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.23 Total: -9.92 kcal Total: -62.22 3.58 -58.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235217268.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.483 kcal (2) G-P(sol) polarization free energy of solvation -62.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.05 seconds