Wall clock time and date at job start Mon Mar 30 2020 20:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00114 * 2 1 4 4 C 1.46904 * 110.99984 * 123.94915 * 2 1 3 5 5 H 1.08999 * 109.19049 * 302.50995 * 4 2 1 6 6 C 1.52587 * 109.22210 * 61.88673 * 4 2 1 7 7 C 1.53100 * 109.95419 * 190.99647 * 6 4 2 8 8 S 1.81744 * 108.83823 * 296.97360 * 7 6 4 9 9 C 1.81745 * 102.22398 * 53.26779 * 8 7 6 10 10 C 1.52574 * 109.22581 * 183.12108 * 4 2 1 11 11 H 1.09000 * 109.39468 * 48.86114 * 10 4 2 12 12 C 1.50703 * 109.39348 * 289.05575 * 10 4 2 13 13 H 1.08002 * 119.99660 * 359.97438 * 12 10 4 14 14 C 1.37871 * 120.00143 * 180.02562 * 12 10 4 15 15 N 1.31514 * 120.00133 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99997 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47182 * 60.00036 * 16 14 12 18 18 H 1.48507 * 109.47176 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47177 * 299.99682 * 16 14 12 20 20 H 1.09003 * 109.47302 * 296.04900 * 1 2 3 21 21 H 1.08998 * 109.47067 * 56.04520 * 1 2 3 22 22 H 1.09000 * 109.46858 * 176.04726 * 1 2 3 23 23 H 1.08992 * 109.47226 * 191.16824 * 3 2 1 24 24 H 1.09003 * 109.47008 * 311.16995 * 3 2 1 25 25 H 1.09008 * 109.47208 * 71.16589 * 3 2 1 26 26 H 1.09001 * 109.39240 * 311.14110 * 6 4 2 27 27 H 1.09000 * 109.39091 * 70.84632 * 6 4 2 28 28 H 1.08995 * 109.57498 * 177.17185 * 7 6 4 29 29 H 1.08998 * 109.68501 * 56.84834 * 7 6 4 30 30 H 1.08999 * 109.57922 * 186.92217 * 9 8 7 31 31 H 1.09006 * 109.57496 * 66.53695 * 9 8 7 32 32 H 0.97004 * 120.00266 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 1.1377 5 1 1.6074 -0.3433 2.0644 6 6 1.5417 -2.2179 1.0189 7 6 1.8429 -2.9675 2.3194 8 16 3.6413 -2.9907 2.5803 9 6 4.0706 -1.2289 2.4591 10 6 3.5185 -0.6749 1.1429 11 1 3.8192 0.3672 1.0345 12 6 4.0717 -1.4774 -0.0064 13 1 3.4010 -1.9998 -0.6725 14 6 5.4341 -1.5456 -0.2070 15 7 6.2508 -0.9099 0.6045 16 14 6.1197 -2.5398 -1.6321 17 1 5.5955 -1.9977 -2.9113 18 1 7.6023 -2.4535 -1.6278 19 1 5.7067 -3.9590 -1.4896 20 1 -0.3634 0.4513 0.9233 21 1 -0.3633 0.5740 -0.8524 22 1 -0.3633 -1.0252 -0.0708 23 1 3.0669 1.3493 -0.1990 24 1 1.4941 1.9530 -0.7736 25 1 1.8160 1.8296 0.9727 26 1 0.4696 -2.2472 0.8243 27 1 2.0708 -2.6961 0.1946 28 1 1.4713 -3.9896 2.2462 29 1 1.3590 -2.4620 3.1551 30 1 5.1544 -1.1149 2.4774 31 1 3.6303 -0.6873 3.2965 32 1 7.2093 -0.9576 0.4632 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259704328.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:59 Heat of formation + Delta-G solvation = 8.932039 kcal Electronic energy + Delta-G solvation = -13577.423207 eV Core-core repulsion = 11471.387239 eV Total energy + Delta-G solvation = -2106.035967 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.19623 -34.00471 -32.31487 -30.01703 -27.02981 -26.11897 -25.00742 -22.16503 -21.37729 -18.96629 -16.46059 -15.57114 -14.96692 -14.59342 -14.19356 -13.86313 -13.31941 -12.85467 -12.45782 -12.08119 -12.05449 -11.90032 -11.52133 -11.34905 -10.84976 -10.72102 -10.66749 -10.57216 -10.36109 -9.69768 -9.18717 -8.89432 -8.53859 -8.20144 -7.59155 -6.43306 -5.90271 -3.87905 2.92083 3.44003 3.46759 3.51497 3.79236 4.55145 4.58469 5.44363 5.52988 5.59585 5.66799 5.77469 5.83546 5.98570 6.04926 6.11994 6.19225 6.28726 6.32548 6.41453 6.62661 6.75907 6.85215 7.09580 7.43691 7.55140 7.75784 7.87795 8.12141 8.46371 9.08345 9.73402 11.18466 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.025035 B = 0.015145 C = 0.011797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.177644 B = 1848.297327 C = 2372.965845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.525 5.525 3 C 0.030 3.970 4 C 0.094 3.906 5 H 0.010 0.990 6 C -0.112 4.112 7 C -0.077 4.077 8 S -0.275 6.275 9 C -0.057 4.057 10 C 0.043 3.957 11 H 0.044 0.956 12 C -0.467 4.467 13 H 0.065 0.935 14 C 0.062 3.938 15 N -0.904 5.904 16 Si 0.890 3.110 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.276 1.276 20 H 0.012 0.988 21 H 0.059 0.941 22 H 0.066 0.934 23 H 0.086 0.914 24 H 0.053 0.947 25 H 0.012 0.988 26 H 0.050 0.950 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.131 0.869 31 H 0.033 0.967 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.522 0.874 1.590 8.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.249 5.249 3 C -0.119 4.119 4 C -0.014 4.014 5 H 0.027 0.973 6 C -0.150 4.150 7 C -0.226 4.226 8 S -0.049 6.049 9 C -0.206 4.206 10 C 0.023 3.977 11 H 0.062 0.938 12 C -0.505 4.505 13 H 0.083 0.917 14 C -0.137 4.137 15 N -0.545 5.545 16 Si 0.719 3.281 17 H -0.206 1.206 18 H -0.218 1.218 19 H -0.202 1.202 20 H 0.031 0.969 21 H 0.077 0.923 22 H 0.085 0.915 23 H 0.105 0.895 24 H 0.072 0.928 25 H 0.031 0.969 26 H 0.068 0.932 27 H 0.117 0.883 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.149 0.851 31 H 0.051 0.949 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.505 -0.202 1.377 7.633 hybrid contribution -0.646 0.957 -0.157 1.165 sum -8.151 0.755 1.220 8.276 Atomic orbital electron populations 1.22445 0.89532 1.01566 0.99175 1.61835 1.05419 1.13338 1.44274 1.22367 1.02665 0.88448 0.98373 1.21688 0.98428 0.92576 0.88696 0.97264 1.21801 0.99613 0.95701 0.97928 1.23211 0.96531 1.02922 0.99931 1.86221 1.06884 1.17887 1.93920 1.23741 1.07677 0.89763 0.99433 1.19000 0.87387 0.98279 0.93012 0.93793 1.20878 0.91085 1.28491 1.10084 0.91708 1.24825 0.97088 0.95581 0.96221 1.69764 1.03036 1.43902 1.37800 0.86672 0.77433 0.81103 0.82921 1.20591 1.21776 1.20163 0.96945 0.92254 0.91537 0.89536 0.92839 0.96939 0.93183 0.88300 0.89419 0.92080 0.85086 0.94861 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.26 60.07 0.56 0.89 16 2 N -0.53 -10.00 4.73 -243.70 -1.15 -11.15 16 3 C 0.03 0.53 8.84 60.06 0.53 1.06 16 4 C 0.09 1.91 1.37 -68.14 -0.09 1.82 16 5 H 0.01 0.19 8.08 -51.93 -0.42 -0.23 16 6 C -0.11 -2.13 4.94 -26.89 -0.13 -2.26 16 7 C -0.08 -1.41 6.46 37.21 0.24 -1.17 16 8 S -0.27 -6.06 21.43 -107.50 -2.30 -8.37 16 9 C -0.06 -1.34 5.73 37.21 0.21 -1.12 16 10 C 0.04 1.01 1.78 -91.94 -0.16 0.85 16 11 H 0.04 1.12 5.81 -51.93 -0.30 0.82 16 12 C -0.47 -12.14 6.67 -34.44 -0.23 -12.37 16 13 H 0.06 1.73 6.04 -52.49 -0.32 1.42 16 14 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 15 N -0.90 -25.21 11.31 55.43 0.63 -24.58 16 16 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 21 H 0.06 0.81 8.04 -51.93 -0.42 0.40 16 22 H 0.07 0.97 6.11 -51.93 -0.32 0.66 16 23 H 0.09 1.76 6.40 -51.93 -0.33 1.43 16 24 H 0.05 0.83 7.99 -51.93 -0.42 0.41 16 25 H 0.01 0.21 8.11 -51.92 -0.42 -0.21 16 26 H 0.05 0.83 5.90 -51.93 -0.31 0.53 16 27 H 0.10 2.14 5.75 -51.93 -0.30 1.84 16 28 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.13 3.43 6.11 -51.93 -0.32 3.11 16 31 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 253.87 15.07 3.83 3.83 Total: -1.00 -27.37 253.87 -7.89 -35.26 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -4.69 Total: -0.96 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 0.83 Total: -10.72 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.53 Total: -35.73 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -6.06 SS G_CDS: -2.30 Total: -8.37 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -27.37 -7.89 -35.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259704328.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.192 kcal (2) G-P(sol) polarization free energy of solvation -27.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds