Wall clock time and date at job start Mon Mar 30 2020 20:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46907 * 109.47050 * 2 1 4 4 C 1.46863 * 110.99764 * 306.59436 * 3 2 1 5 5 C 1.53608 * 116.10979 * 194.52881 * 4 3 2 6 6 S 1.80176 * 113.03847 * 315.59421 * 5 4 3 7 7 C 1.83749 * 102.69322 * 84.92677 * 6 5 4 8 8 C 1.45868 * 109.14058 * 292.59632 * 7 6 5 9 9 C 1.45760 * 111.08440 * 183.49649 * 3 2 1 10 10 H 1.08998 * 110.13858 * 108.11894 * 9 3 2 11 11 C 1.50700 * 109.91617 * 346.73669 * 9 3 2 12 12 H 1.08000 * 120.00250 * 7.84045 * 11 9 3 13 13 C 1.37884 * 120.00024 * 187.83575 * 11 9 3 14 14 N 1.31513 * 119.99805 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 119.99742 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47359 * 60.00623 * 15 13 11 17 17 H 1.48507 * 109.47124 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47302 * 299.99889 * 15 13 11 19 19 H 1.09001 * 109.46973 * 306.23407 * 1 2 3 20 20 H 1.08998 * 109.47416 * 66.23431 * 1 2 3 21 21 H 1.08997 * 109.46881 * 186.23680 * 1 2 3 22 22 H 1.08999 * 109.47209 * 239.99867 * 2 1 3 23 23 H 1.08999 * 109.47323 * 119.99915 * 2 1 3 24 24 H 1.09000 * 108.15180 * 72.80692 * 4 3 2 25 25 H 1.08998 * 108.15204 * 316.25204 * 4 3 2 26 26 H 1.09001 * 108.77362 * 194.67441 * 5 4 3 27 27 H 1.09007 * 108.77138 * 76.51208 * 5 4 3 28 28 H 1.09001 * 109.52408 * 172.70464 * 7 6 5 29 29 H 1.08997 * 109.53013 * 52.49450 * 7 6 5 30 30 H 1.08997 * 108.32279 * 185.72188 * 8 7 6 31 31 H 1.09004 * 108.32019 * 302.90228 * 8 7 6 32 32 H 0.97003 * 119.99753 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.4244 2.1537 -1.1008 5 6 2.0968 3.4951 -1.4297 6 16 2.4932 4.4634 0.0371 7 6 4.1241 3.7834 0.5412 8 6 3.9499 2.4070 0.9916 9 6 3.4743 1.4270 -0.0829 10 1 3.7841 1.7756 -1.0681 11 6 4.0433 0.0569 0.1821 12 1 3.3841 -0.7944 0.2675 13 6 5.4055 -0.1100 0.3153 14 7 6.2081 0.9266 0.2116 15 14 6.1107 -1.8084 0.6430 16 1 5.7450 -2.7196 -0.4709 17 1 7.5896 -1.7191 0.7449 18 1 5.5583 -2.3365 1.9164 19 1 -0.3633 0.6074 0.8289 20 1 -0.3634 0.4141 -0.9405 21 1 -0.3633 -1.0216 0.1116 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 0.3809 2.3485 -0.8536 25 1 1.4454 1.5344 -1.9976 26 1 1.4276 4.0768 -2.0637 27 1 3.0170 3.3004 -1.9807 28 1 4.5336 4.3835 1.3538 29 1 4.8064 3.8050 -0.3086 30 1 4.9032 2.0510 1.3823 31 1 3.2246 2.4019 1.8052 32 1 7.1664 0.8093 0.3057 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260144696.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:05 Heat of formation + Delta-G solvation = 13.249796 kcal Electronic energy + Delta-G solvation = -13504.431067 eV Core-core repulsion = 11398.582332 eV Total energy + Delta-G solvation = -2105.848735 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.96473 -33.70865 -32.06422 -30.97032 -28.86911 -26.14359 -23.29853 -22.76960 -20.58777 -19.03532 -16.28416 -15.63617 -15.42405 -14.54579 -14.22453 -14.14993 -13.56901 -12.86848 -12.56879 -12.33301 -12.09947 -11.67391 -11.41886 -11.09422 -10.95989 -10.77439 -10.54274 -10.40886 -9.91066 -9.71946 -9.60942 -9.04794 -8.76806 -8.35242 -7.18164 -6.88365 -6.09620 -4.19137 2.55985 3.24596 3.29854 3.31424 3.32451 4.33001 4.93730 5.18721 5.43616 5.55660 5.80096 5.87412 5.92516 6.02091 6.15736 6.20213 6.24194 6.38913 6.47174 6.75066 6.78718 6.88604 7.08139 7.29013 7.41088 7.68834 7.80392 8.12302 8.32539 8.55213 8.88582 9.47481 10.92732 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.029274 B = 0.013012 C = 0.009695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.244452 B = 2151.393518 C = 2887.266395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.066 3.934 3 N -0.521 5.521 4 C 0.062 3.938 5 C -0.074 4.074 6 S -0.304 6.304 7 C -0.032 4.032 8 C -0.119 4.119 9 C 0.213 3.787 10 H 0.007 0.993 11 C -0.534 4.534 12 H 0.075 0.925 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.893 3.107 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.276 1.276 19 H 0.057 0.943 20 H 0.043 0.957 21 H 0.047 0.953 22 H 0.030 0.970 23 H 0.083 0.917 24 H 0.060 0.940 25 H 0.022 0.978 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.049 0.951 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.888 1.941 -1.576 6.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.061 4.061 3 N -0.246 5.246 4 C -0.068 4.068 5 C -0.222 4.222 6 S -0.079 6.079 7 C -0.179 4.179 8 C -0.158 4.158 9 C 0.106 3.894 10 H 0.025 0.975 11 C -0.572 4.572 12 H 0.093 0.907 13 C -0.138 4.138 14 N -0.524 5.524 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.201 1.201 19 H 0.076 0.924 20 H 0.062 0.938 21 H 0.066 0.934 22 H 0.048 0.952 23 H 0.101 0.899 24 H 0.079 0.921 25 H 0.040 0.960 26 H 0.111 0.889 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.068 0.932 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.422 3.034 -0.656 7.133 hybrid contribution 1.458 -2.167 -1.250 2.895 sum -4.964 0.867 -1.905 5.387 Atomic orbital electron populations 1.21982 0.97546 1.00514 1.01204 1.22061 0.92170 0.90560 1.01350 1.62503 1.09657 1.11074 1.41327 1.22108 0.98503 0.92967 0.93242 1.23213 1.03631 0.98074 0.97327 1.86228 1.31605 1.51326 1.38715 1.22411 0.91635 1.00812 1.03075 1.20572 1.03730 0.91054 1.00486 1.19115 0.81550 0.95072 0.93652 0.97511 1.21751 0.92197 0.93546 1.49673 0.90743 1.24972 0.97133 0.96819 0.94922 1.69899 1.03749 1.29252 1.49502 0.86631 0.77922 0.84432 0.78904 1.20341 1.21236 1.20104 0.92371 0.93819 0.93375 0.95151 0.89904 0.92144 0.96001 0.88922 0.90451 0.89868 0.90772 0.87901 0.93223 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.25 37.16 0.34 -2.13 16 2 C 0.07 1.32 4.23 -3.82 -0.02 1.30 16 3 N -0.52 -11.13 4.19 -228.57 -0.96 -12.09 16 4 C 0.06 1.17 4.28 -3.53 -0.02 1.16 16 5 C -0.07 -1.32 5.60 37.47 0.21 -1.11 16 6 S -0.30 -5.88 21.84 -107.50 -2.35 -8.23 16 7 C -0.03 -0.67 6.14 33.78 0.21 -0.46 16 8 C -0.12 -2.79 4.31 -30.10 -0.13 -2.92 16 9 C 0.21 5.16 2.04 -69.48 -0.14 5.02 16 10 H 0.01 0.19 6.05 -51.93 -0.31 -0.12 16 11 C -0.53 -13.91 7.64 -34.44 -0.26 -14.17 16 12 H 0.07 1.89 4.72 -52.49 -0.25 1.64 16 13 C 0.06 1.68 5.08 -17.82 -0.09 1.59 16 14 N -0.89 -23.95 11.19 55.43 0.62 -23.33 16 15 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 20 H 0.04 0.65 6.99 -51.93 -0.36 0.29 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.03 0.63 7.44 -51.93 -0.39 0.25 16 23 H 0.08 1.75 6.59 -51.93 -0.34 1.40 16 24 H 0.06 1.06 7.09 -51.93 -0.37 0.69 16 25 H 0.02 0.41 7.94 -51.93 -0.41 -0.01 16 26 H 0.09 1.41 8.14 -51.74 -0.42 0.99 16 27 H 0.08 1.47 7.02 -51.74 -0.36 1.11 16 28 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 29 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 30 H 0.10 2.69 5.45 -51.93 -0.28 2.41 16 31 H 0.05 1.19 7.87 -51.93 -0.41 0.79 16 32 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 252.82 15.07 3.81 3.81 Total: -1.00 -26.54 252.82 -8.53 -35.07 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -4.74 Total: 1.00 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: 0.10 Total: -11.73 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: -0.34 Total: -35.42 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: -5.88 SS G_CDS: -2.35 Total: -8.23 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -26.54 -8.53 -35.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260144696.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.315 kcal (2) G-P(sol) polarization free energy of solvation -26.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds