Wall clock time and date at job start Mon Mar 30 2020 20:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46907 * 109.47050 * 2 1 4 4 C 1.46863 * 110.99764 * 306.59436 * 3 2 1 5 5 C 1.53608 * 116.10979 * 194.52881 * 4 3 2 6 6 S 1.80176 * 113.03847 * 315.59421 * 5 4 3 7 7 C 1.83749 * 102.69322 * 84.92677 * 6 5 4 8 8 C 1.45868 * 109.14058 * 292.59632 * 7 6 5 9 9 C 1.45760 * 111.08440 * 183.49649 * 3 2 1 10 10 H 1.08998 * 110.13858 * 108.11894 * 9 3 2 11 11 C 1.50700 * 109.91617 * 346.73669 * 9 3 2 12 12 H 1.08000 * 120.00250 * 7.84045 * 11 9 3 13 13 C 1.37884 * 120.00024 * 187.83575 * 11 9 3 14 14 N 1.31513 * 119.99805 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 119.99742 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47359 * 60.00623 * 15 13 11 17 17 H 1.48507 * 109.47124 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47302 * 299.99889 * 15 13 11 19 19 H 1.09001 * 109.46973 * 306.23407 * 1 2 3 20 20 H 1.08998 * 109.47416 * 66.23431 * 1 2 3 21 21 H 1.08997 * 109.46881 * 186.23680 * 1 2 3 22 22 H 1.08999 * 109.47209 * 239.99867 * 2 1 3 23 23 H 1.08999 * 109.47323 * 119.99915 * 2 1 3 24 24 H 1.09000 * 108.15180 * 72.80692 * 4 3 2 25 25 H 1.08998 * 108.15204 * 316.25204 * 4 3 2 26 26 H 1.09001 * 108.77362 * 194.67441 * 5 4 3 27 27 H 1.09007 * 108.77138 * 76.51208 * 5 4 3 28 28 H 1.09001 * 109.52408 * 172.70464 * 7 6 5 29 29 H 1.08997 * 109.53013 * 52.49450 * 7 6 5 30 30 H 1.08997 * 108.32279 * 185.72188 * 8 7 6 31 31 H 1.09004 * 108.32019 * 302.90228 * 8 7 6 32 32 H 0.97003 * 119.99753 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.4244 2.1537 -1.1008 5 6 2.0968 3.4951 -1.4297 6 16 2.4932 4.4634 0.0371 7 6 4.1241 3.7834 0.5412 8 6 3.9499 2.4070 0.9916 9 6 3.4743 1.4270 -0.0829 10 1 3.7841 1.7756 -1.0681 11 6 4.0433 0.0569 0.1821 12 1 3.3841 -0.7944 0.2675 13 6 5.4055 -0.1100 0.3153 14 7 6.2081 0.9266 0.2116 15 14 6.1107 -1.8084 0.6430 16 1 5.7450 -2.7196 -0.4709 17 1 7.5896 -1.7191 0.7449 18 1 5.5583 -2.3365 1.9164 19 1 -0.3633 0.6074 0.8289 20 1 -0.3634 0.4141 -0.9405 21 1 -0.3633 -1.0216 0.1116 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 0.3809 2.3485 -0.8536 25 1 1.4454 1.5344 -1.9976 26 1 1.4276 4.0768 -2.0637 27 1 3.0170 3.3004 -1.9807 28 1 4.5336 4.3835 1.3538 29 1 4.8064 3.8050 -0.3086 30 1 4.9032 2.0510 1.3823 31 1 3.2246 2.4019 1.8052 32 1 7.1664 0.8093 0.3057 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260144696.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:05 Heat of formation + Delta-G solvation = -2.195331 kcal Electronic energy + Delta-G solvation = -13505.100818 eV Core-core repulsion = 11398.582332 eV Total energy + Delta-G solvation = -2106.518486 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.67406 -35.51316 -33.88757 -32.55160 -30.48756 -27.95575 -25.06574 -24.35460 -22.27505 -20.82844 -18.16393 -17.35761 -17.06718 -16.25612 -15.99046 -15.76196 -15.09757 -14.59245 -14.29162 -13.99402 -13.70144 -13.26671 -13.06922 -12.79628 -12.65866 -12.43062 -12.09259 -12.04708 -11.73310 -11.54469 -11.25757 -10.84980 -10.65617 -10.25100 -8.88542 -8.47334 -8.08985 -6.25882 1.00397 1.41055 1.42293 1.48921 1.72474 2.40504 3.12626 3.40029 3.92148 4.13671 4.20036 4.35980 4.45021 4.49864 4.67136 4.69231 4.79415 4.87332 4.97147 5.08795 5.13394 5.27362 5.38778 5.45728 5.58568 5.70749 5.91986 6.21094 6.45264 6.76662 6.92920 7.44110 8.90633 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.029274 B = 0.013012 C = 0.009695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.244452 B = 2151.393518 C = 2887.266395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.067 3.933 3 N -0.529 5.529 4 C 0.060 3.940 5 C -0.074 4.074 6 S -0.287 6.287 7 C -0.034 4.034 8 C -0.104 4.104 9 C 0.218 3.782 10 H -0.020 1.020 11 C -0.552 4.552 12 H 0.077 0.923 13 C 0.019 3.981 14 N -0.908 5.908 15 Si 0.952 3.048 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.272 1.272 19 H 0.059 0.941 20 H 0.056 0.944 21 H 0.068 0.932 22 H 0.015 0.985 23 H 0.063 0.937 24 H 0.082 0.918 25 H 0.025 0.975 26 H 0.128 0.872 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.299 1.845 -1.811 7.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.061 4.061 3 N -0.254 5.254 4 C -0.071 4.071 5 C -0.223 4.223 6 S -0.061 6.061 7 C -0.182 4.182 8 C -0.144 4.144 9 C 0.111 3.889 10 H -0.003 1.003 11 C -0.590 4.590 12 H 0.095 0.905 13 C -0.181 4.181 14 N -0.547 5.547 15 Si 0.778 3.222 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.197 1.197 19 H 0.078 0.922 20 H 0.075 0.925 21 H 0.087 0.913 22 H 0.033 0.967 23 H 0.082 0.918 24 H 0.100 0.900 25 H 0.043 0.957 26 H 0.146 0.854 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.851 2.938 -0.892 8.430 hybrid contribution 1.849 -2.124 -1.202 3.062 sum -6.002 0.814 -2.094 6.409 Atomic orbital electron populations 1.21865 0.94054 1.02126 1.01921 1.22014 0.94983 0.89422 0.99665 1.62487 1.07882 1.12257 1.42765 1.22192 0.99323 0.92985 0.92552 1.23332 1.03788 0.98164 0.97007 1.86123 1.29828 1.50924 1.39262 1.22251 0.93082 0.99723 1.03122 1.20385 1.01726 0.92433 0.99877 1.18918 0.83538 0.94314 0.92170 1.00273 1.22123 0.92655 0.94652 1.49541 0.90539 1.25675 0.97552 0.99975 0.94885 1.70025 1.03758 1.30816 1.50089 0.85702 0.77104 0.80591 0.78791 1.19956 1.21108 1.19684 0.92236 0.92530 0.91267 0.96701 0.91830 0.90014 0.95674 0.85355 0.91888 0.88427 0.92069 0.90875 0.94220 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 9.25 71.98 0.67 -3.49 16 2 C 0.07 2.60 4.23 86.30 0.37 2.97 16 3 N -0.53 -22.25 4.19 -877.07 -3.67 -25.92 16 4 C 0.06 2.12 4.28 86.51 0.37 2.49 16 5 C -0.07 -2.53 5.60 72.19 0.40 -2.12 16 6 S -0.29 -10.62 21.84 -56.49 -1.23 -11.86 16 7 C -0.03 -1.43 6.14 69.80 0.43 -1.00 16 8 C -0.10 -4.99 4.31 28.41 0.12 -4.87 16 9 C 0.22 10.71 2.04 44.39 0.09 10.80 16 10 H -0.02 -1.09 6.05 -2.39 -0.01 -1.11 16 11 C -0.55 -29.18 7.64 25.60 0.20 -28.98 16 12 H 0.08 3.93 4.72 -2.91 -0.01 3.91 16 13 C 0.02 1.01 5.08 84.66 0.43 1.44 16 14 N -0.91 -50.10 11.19 21.45 0.24 -49.86 16 15 Si 0.95 42.39 29.54 68.60 2.03 44.41 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 17 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 20 H 0.06 1.51 6.99 -2.39 -0.02 1.49 16 21 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.01 0.61 7.44 -2.39 -0.02 0.60 16 23 H 0.06 2.68 6.59 -2.39 -0.02 2.66 16 24 H 0.08 2.58 7.09 -2.39 -0.02 2.56 16 25 H 0.03 0.89 7.94 -2.39 -0.02 0.87 16 26 H 0.13 3.46 8.14 -2.50 -0.02 3.44 16 27 H 0.06 2.35 7.02 -2.50 -0.02 2.33 16 28 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 29 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.07 3.94 5.45 -2.39 -0.01 3.93 16 31 H 0.04 1.92 7.87 -2.38 -0.02 1.90 16 32 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -56.29 252.82 1.52 -54.77 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 1.09 Total: 11.22 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: 3.07 Total: -22.77 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -3.43 Total: -75.78 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: -10.62 SS G_CDS: -1.23 Total: -11.86 kcal Total: -56.29 1.52 -54.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260144696.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.574 kcal (2) G-P(sol) polarization free energy of solvation -56.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds