Wall clock time and date at job start Mon Mar 30 2020 20:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00002 * 2 1 4 4 H 1.48500 * 109.47142 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46987 * 119.99554 * 3 2 1 6 6 H 1.48500 * 109.47429 * 239.99983 * 3 2 1 7 7 C 1.37870 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00090 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00096 * 0.02562 * 7 2 1 10 10 O 1.42894 * 109.52370 * 59.87312 * 9 7 2 11 11 C 1.53120 * 109.52446 * 299.67960 * 9 7 2 12 12 C 1.53039 * 109.28014 * 182.43805 * 11 9 7 13 13 N 1.46846 * 109.52147 * 59.18152 * 12 11 9 14 14 C 1.46898 * 110.99970 * 174.15768 * 13 12 11 15 15 C 1.53006 * 109.47095 * 199.93285 * 14 13 12 16 16 O 1.42895 * 109.47196 * 64.58792 * 15 14 13 17 17 C 1.46845 * 111.19983 * 298.25791 * 13 12 11 18 18 C 1.53037 * 109.52272 * 61.74123 * 17 13 12 19 19 H 0.97006 * 120.00084 * 0.02562 * 1 2 3 20 20 H 0.96705 * 114.00115 * 300.00297 * 10 9 7 21 21 H 1.08993 * 109.50234 * 302.38756 * 11 9 7 22 22 H 1.09001 * 109.49682 * 62.49850 * 11 9 7 23 23 H 1.08995 * 109.46548 * 299.16646 * 12 11 9 24 24 H 1.08998 * 109.46076 * 179.19613 * 12 11 9 25 25 H 1.09003 * 109.46928 * 319.92987 * 14 13 12 26 26 H 1.08996 * 109.47134 * 79.93307 * 14 13 12 27 27 H 1.08995 * 109.46842 * 184.59320 * 15 14 13 28 28 H 1.09003 * 109.46392 * 304.58858 * 15 14 13 29 29 H 0.96701 * 113.99738 * 179.97438 * 16 15 14 30 30 H 1.08996 * 109.45976 * 301.72626 * 17 13 12 31 31 H 1.09003 * 109.46306 * 181.75374 * 17 13 12 32 32 H 1.09001 * 109.50604 * 180.87871 * 18 17 13 33 33 H 1.09003 * 109.50456 * 60.76492 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 0.4272 -2.5749 -1.1646 11 6 0.3758 -2.5847 1.2540 12 6 -0.3400 -3.9372 1.2792 13 7 0.6538 -5.0183 1.2795 14 6 0.0075 -6.3274 1.4429 15 6 1.0382 -7.3477 1.9304 16 8 1.4959 -6.9777 3.2325 17 6 1.4751 -4.9851 0.0627 18 6 2.2449 -3.6639 0.0012 19 1 -0.4850 0.8401 -0.0004 20 1 -0.2287 -1.8673 -1.2294 21 1 1.0008 -2.4871 2.1416 22 1 -0.3622 -1.7827 1.2380 23 1 -0.9754 -4.0283 0.3983 24 1 -0.9529 -4.0070 2.1778 25 1 -0.7973 -6.2465 2.1736 26 1 -0.4014 -6.6526 0.4863 27 1 0.5793 -8.3354 1.9735 28 1 1.8823 -7.3691 1.2410 29 1 2.1527 -7.5818 3.6049 30 1 0.8311 -5.0713 -0.8125 31 1 2.1804 -5.8160 0.0777 32 1 2.8424 -3.6329 -0.9100 33 1 2.8994 -3.5833 0.8691 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260424106.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:10 Heat of formation + Delta-G solvation = -101.689555 kcal Electronic energy + Delta-G solvation = -15463.065730 eV Core-core repulsion = 12909.479979 eV Total energy + Delta-G solvation = -2553.585751 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.56447 -36.64999 -34.90124 -32.02027 -31.08285 -29.88200 -28.02671 -25.39534 -22.70759 -21.80156 -20.66854 -18.47257 -17.24310 -16.85349 -15.62224 -14.94257 -14.60146 -14.17548 -13.72278 -13.55118 -13.10165 -12.80424 -12.60473 -12.03490 -11.62451 -11.28916 -11.10373 -10.93312 -10.68627 -10.51469 -10.29701 -10.07933 -10.01800 -9.74899 -9.68635 -8.88380 -8.49164 -7.96962 -7.51829 -6.09021 -4.19154 3.29415 3.33607 3.37114 4.37606 4.43999 4.55591 5.15345 5.32329 5.39838 5.55973 5.77755 5.86103 6.02010 6.06642 6.19251 6.32941 6.36586 6.44374 6.64616 6.76231 6.91059 7.12504 7.34407 7.58120 7.69302 7.82577 7.84913 7.93807 8.11046 8.29243 8.82990 9.48703 9.63410 10.93885 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.054502 B = 0.008016 C = 0.007886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.619840 B = 3492.020258 C = 3549.661115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.898 3.102 4 H -0.287 1.287 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.532 4.532 8 H 0.058 0.942 9 C 0.250 3.750 10 O -0.595 6.595 11 C -0.130 4.130 12 C 0.062 3.938 13 N -0.527 5.527 14 C 0.052 3.948 15 C 0.084 3.916 16 O -0.556 6.556 17 C 0.061 3.939 18 C -0.092 4.092 19 H 0.266 0.734 20 H 0.378 0.622 21 H 0.051 0.949 22 H 0.094 0.906 23 H 0.028 0.972 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.039 0.961 28 H 0.043 0.957 29 H 0.368 0.632 30 H 0.033 0.967 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.240 -10.603 2.478 10.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.726 3.274 4 H -0.212 1.212 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.570 4.570 8 H 0.076 0.924 9 C 0.211 3.789 10 O -0.404 6.404 11 C -0.168 4.168 12 C -0.066 4.066 13 N -0.252 5.252 14 C -0.077 4.077 15 C 0.006 3.994 16 O -0.360 6.360 17 C -0.066 4.066 18 C -0.130 4.130 19 H 0.076 0.924 20 H 0.228 0.772 21 H 0.069 0.931 22 H 0.112 0.888 23 H 0.046 0.954 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.213 0.787 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.338 -10.426 2.661 10.766 hybrid contribution -0.031 0.797 -0.473 0.928 sum 0.307 -9.629 2.188 9.879 Atomic orbital electron populations 1.69587 1.05887 1.27234 1.51515 1.24994 0.94978 0.99328 0.93951 0.86556 0.79589 0.82566 0.78669 1.21225 1.20194 1.20235 1.21760 0.93636 0.91274 1.50374 0.92402 1.18609 0.86839 0.91335 0.82135 1.86083 1.52768 1.54969 1.46545 1.22208 1.00797 0.93948 0.99882 1.22155 0.93137 0.92648 0.98619 1.61945 1.23599 1.01639 1.38046 1.22094 0.95858 0.90596 0.99145 1.22188 0.96872 0.95640 0.84710 1.86653 1.62557 1.54640 1.32118 1.22073 0.96036 0.98436 0.90076 1.21508 0.97798 0.93123 1.00606 0.92404 0.77214 0.93068 0.88803 0.95386 0.92886 0.90834 0.93952 0.94288 0.93841 0.78725 0.94877 0.92870 0.92649 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.46 9.73 55.43 0.54 -23.92 16 2 C 0.07 1.85 5.22 -17.82 -0.09 1.76 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -14.72 8.25 -34.44 -0.28 -15.00 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.25 6.38 0.67 -91.65 -0.06 6.31 16 10 O -0.59 -15.68 11.83 -35.23 -0.42 -16.10 16 11 C -0.13 -3.17 4.83 -26.65 -0.13 -3.29 16 12 C 0.06 1.30 5.29 -3.83 -0.02 1.28 16 13 N -0.53 -10.29 4.53 -234.67 -1.06 -11.35 16 14 C 0.05 0.82 5.39 -3.82 -0.02 0.80 16 15 C 0.08 1.12 7.24 37.16 0.27 1.39 16 16 O -0.56 -8.02 13.60 -35.23 -0.48 -8.50 16 17 C 0.06 1.22 5.16 -3.83 -0.02 1.20 16 18 C -0.09 -2.09 5.05 -26.65 -0.13 -2.23 16 19 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 20 H 0.38 10.20 7.14 45.56 0.33 10.52 16 21 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 22 H 0.09 2.46 6.17 -51.93 -0.32 2.14 16 23 H 0.03 0.61 7.76 -51.93 -0.40 0.21 16 24 H 0.05 1.05 7.93 -51.93 -0.41 0.63 16 25 H 0.07 1.14 7.79 -51.93 -0.40 0.74 16 26 H 0.04 0.63 8.00 -51.93 -0.42 0.21 16 27 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.04 0.56 6.71 -51.93 -0.35 0.22 16 29 H 0.37 3.37 9.12 45.56 0.42 3.78 16 30 H 0.03 0.69 7.76 -51.93 -0.40 0.29 16 31 H 0.05 0.92 6.65 -51.93 -0.35 0.58 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 261.28 15.07 3.94 3.94 Total: -1.00 -29.69 261.28 -6.54 -36.23 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -3.54 Total: 11.35 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -0.49 Total: -7.79 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: -0.52 Total: -35.27 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.90 Total: -24.60 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.69 -6.54 -36.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260424106.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.463 kcal (2) G-P(sol) polarization free energy of solvation -29.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds