Wall clock time and date at job start Mon Mar 30 2020 20:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46894 * 109.47272 * 2 1 4 4 C 1.46901 * 111.00329 * 184.78505 * 3 2 1 5 5 C 1.50704 * 109.39117 * 56.12243 * 4 3 2 6 6 H 1.07999 * 119.99930 * 240.58451 * 5 4 3 7 7 C 1.37880 * 119.99612 * 60.57761 * 5 4 3 8 8 N 1.31515 * 120.00254 * 354.06595 * 7 5 4 9 9 Si 1.86801 * 119.99642 * 174.07255 * 7 5 4 10 10 H 1.48498 * 109.47143 * 60.00042 * 9 7 5 11 11 H 1.48497 * 109.46956 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47116 * 299.99741 * 9 7 5 13 13 C 1.52586 * 109.39478 * 175.92628 * 4 3 2 14 14 C 1.52618 * 110.70413 * 190.92476 * 13 4 3 15 15 C 1.53103 * 109.86972 * 289.17761 * 14 13 4 16 16 S 1.81747 * 108.84248 * 63.06516 * 15 14 13 17 17 C 1.53099 * 109.39140 * 296.32436 * 4 3 2 18 18 H 1.08998 * 109.47203 * 180.02562 * 1 2 3 19 19 H 1.08998 * 109.46902 * 300.00103 * 1 2 3 20 20 H 1.09000 * 109.46904 * 59.99710 * 1 2 3 21 21 H 1.09001 * 109.47385 * 239.99971 * 2 1 3 22 22 H 1.09002 * 109.47419 * 120.00273 * 2 1 3 23 23 H 1.00907 * 111.00148 * 308.73849 * 3 2 1 24 24 H 0.96993 * 120.00062 * 180.02562 * 8 7 5 25 25 H 1.09002 * 109.22048 * 311.14247 * 13 4 3 26 26 H 1.09002 * 109.22359 * 70.49870 * 13 4 3 27 27 H 1.08997 * 109.40322 * 169.07781 * 14 13 4 28 28 H 1.09001 * 109.46482 * 49.31665 * 14 13 4 29 29 H 1.08999 * 109.57592 * 303.25096 * 15 14 13 30 30 H 1.09002 * 109.68272 * 182.93605 * 15 14 13 31 31 H 1.09006 * 109.57183 * 296.63306 * 17 4 3 32 32 H 1.09000 * 109.57599 * 56.88505 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4836 1.4258 -0.1144 5 6 3.9097 0.6807 -1.3532 6 1 4.5550 -0.1813 -1.2697 7 6 3.4756 1.0995 -2.5930 8 7 2.5984 2.0748 -2.6877 9 14 4.1332 0.2814 -4.1382 10 1 3.8011 -1.1657 -4.1118 11 1 3.5134 0.9093 -5.3327 12 1 5.6073 0.4500 -4.1985 13 6 3.9439 2.8772 -0.2128 14 6 5.4181 2.9506 -0.6010 15 6 6.2881 2.4823 0.5685 16 16 5.9145 0.7380 0.9163 17 6 4.1084 0.7640 1.1167 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5139 0.8900 23 1 1.5844 1.9224 -0.7348 24 1 2.2927 2.3692 -3.5599 25 1 3.3492 3.3919 -0.9675 26 1 3.8000 3.3655 0.7510 27 1 5.6751 3.9792 -0.8540 28 1 5.5984 2.3111 -1.4650 29 1 6.0705 3.0853 1.4500 30 1 7.3413 2.5851 0.3068 31 1 3.8481 1.3334 2.0090 32 1 3.7349 -0.2556 1.2124 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261154691.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:48 Heat of formation + Delta-G solvation = -25.128415 kcal Electronic energy + Delta-G solvation = -13663.971273 eV Core-core repulsion = 11556.458333 eV Total energy + Delta-G solvation = -2107.512940 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.25445 -35.30754 -33.90994 -31.96488 -28.74032 -27.69590 -27.06097 -23.56731 -21.82063 -20.81257 -18.31127 -17.18127 -16.75782 -15.79537 -15.63606 -15.26127 -15.06703 -14.59529 -14.21290 -13.84628 -13.55367 -13.15502 -12.88963 -12.64146 -12.56501 -12.27942 -12.23257 -11.95100 -11.67164 -11.64310 -11.24452 -10.92861 -10.48505 -10.28436 -8.85006 -8.32558 -7.92629 -6.08437 1.16875 1.38767 1.42586 1.48071 1.86248 2.45155 3.21411 3.97339 4.17333 4.27386 4.33885 4.46354 4.54192 4.63244 4.71295 4.81802 4.88303 4.98301 5.00037 5.13386 5.30581 5.38446 5.54276 5.57758 5.70887 5.80128 5.92870 6.32127 6.77705 6.99868 7.20285 7.57743 8.96741 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.022060 B = 0.017439 C = 0.012314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.947335 B = 1605.185914 C = 2273.198460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.065 3.935 3 N -0.685 5.685 4 C 0.224 3.776 5 C -0.513 4.513 6 H 0.045 0.955 7 C 0.039 3.961 8 N -0.906 5.906 9 Si 0.927 3.073 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.278 1.278 13 C -0.096 4.096 14 C -0.104 4.104 15 C -0.060 4.060 16 S -0.301 6.301 17 C -0.043 4.043 18 H 0.065 0.935 19 H 0.060 0.940 20 H 0.038 0.962 21 H 0.011 0.989 22 H 0.050 0.950 23 H 0.348 0.652 24 H 0.260 0.740 25 H 0.062 0.938 26 H 0.032 0.968 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.502 0.614 4.597 4.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.065 4.065 3 N -0.319 5.319 4 C 0.133 3.867 5 C -0.553 4.553 6 H 0.063 0.937 7 C -0.160 4.160 8 N -0.546 5.546 9 Si 0.755 3.245 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.203 1.203 13 C -0.135 4.135 14 C -0.143 4.143 15 C -0.208 4.208 16 S -0.076 6.076 17 C -0.192 4.192 18 H 0.084 0.916 19 H 0.079 0.921 20 H 0.057 0.943 21 H 0.029 0.971 22 H 0.069 0.931 23 H 0.169 0.831 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.050 0.950 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.127 0.873 31 H 0.087 0.913 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.103 -0.094 5.238 5.645 hybrid contribution -0.441 0.237 -2.192 2.249 sum 1.661 0.143 3.045 3.472 Atomic orbital electron populations 1.21682 0.95132 1.01367 1.01190 1.21616 0.94677 0.91730 0.98455 1.61128 1.06997 1.11229 1.52511 1.18615 0.86031 0.92195 0.89854 1.21682 1.28738 1.12942 0.91895 0.93676 1.25254 0.95121 0.95449 1.00222 1.69719 1.31257 1.29185 1.24445 0.86101 0.78857 0.78646 0.80879 1.21008 1.21463 1.20349 1.21230 0.95700 0.97709 0.98867 1.21536 0.94667 1.00364 0.97782 1.23356 1.03199 0.92854 1.01432 1.86123 1.10486 1.17267 1.93703 1.23387 0.91444 1.03432 1.00917 0.91628 0.92127 0.94321 0.97092 0.93137 0.83085 0.93031 0.91898 0.94954 0.91762 0.91904 0.89559 0.87283 0.91271 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 10.12 71.98 0.73 -3.95 16 2 C 0.07 2.71 5.74 86.30 0.50 3.21 16 3 N -0.68 -30.64 6.07 -474.42 -2.88 -33.52 16 4 C 0.22 10.11 0.43 2.68 0.00 10.11 16 5 C -0.51 -25.59 4.02 25.60 0.10 -25.49 16 6 H 0.04 2.40 7.20 -2.91 -0.02 2.38 16 7 C 0.04 1.99 4.88 84.66 0.41 2.40 16 8 N -0.91 -46.48 9.80 21.45 0.21 -46.27 16 9 Si 0.93 42.41 29.54 68.60 2.03 44.44 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 C -0.10 -4.19 4.41 30.33 0.13 -4.06 16 14 C -0.10 -4.10 5.60 30.50 0.17 -3.93 16 15 C -0.06 -2.05 6.45 72.02 0.46 -1.59 16 16 S -0.30 -11.77 21.09 -56.49 -1.19 -12.96 16 17 C -0.04 -1.77 5.17 72.02 0.37 -1.40 16 18 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 19 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 20 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.01 0.52 6.78 -2.39 -0.02 0.50 16 22 H 0.05 2.00 6.57 -2.39 -0.02 1.98 16 23 H 0.35 16.95 6.48 -89.69 -0.58 16.37 16 24 H 0.26 13.15 8.31 -92.71 -0.77 12.38 16 25 H 0.06 3.05 6.44 -2.39 -0.02 3.03 16 26 H 0.03 1.32 8.08 -2.39 -0.02 1.30 16 27 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.06 2.86 6.37 -2.39 -0.02 2.84 16 29 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 31 H 0.07 2.70 8.14 -2.38 -0.02 2.69 16 32 H 0.08 3.36 6.44 -2.39 -0.02 3.34 16 Total: -1.00 -51.39 254.29 1.56 -49.83 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 0.52 Total: 23.16 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 2.88 Total: -24.68 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -2.67 Total: -79.79 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: -11.77 SS G_CDS: -1.19 Total: -12.96 kcal Total: -51.39 1.56 -49.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261154691.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.701 kcal (2) G-P(sol) polarization free energy of solvation -51.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds