Wall clock time and date at job start Mon Mar 30 2020 20:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81397 * 109.47213 * 2 1 4 4 C 1.81404 * 103.00042 * 179.97438 * 3 2 1 5 5 H 1.08998 * 110.05620 * 53.58110 * 4 3 2 6 6 C 1.54267 * 110.02896 * 292.16432 * 4 3 2 7 7 C 1.54891 * 104.19324 * 217.10701 * 6 4 3 8 8 C 1.54888 * 102.75120 * 37.94011 * 7 6 4 9 9 H 1.09001 * 110.59737 * 80.79460 * 8 7 6 10 10 N 1.46496 * 110.48901 * 203.37932 * 8 7 6 11 11 C 1.36937 * 120.00074 * 269.78068 * 10 8 7 12 12 H 1.08000 * 119.99815 * 359.97438 * 11 10 8 13 13 C 1.38808 * 119.99941 * 179.97438 * 11 10 8 14 14 N 1.31620 * 120.00177 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00001 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47332 * 89.99674 * 15 13 11 17 17 H 1.48507 * 109.47032 * 209.99773 * 15 13 11 18 18 H 1.48501 * 109.46937 * 329.99426 * 15 13 11 19 19 C 1.53876 * 110.03274 * 174.99925 * 4 3 2 20 20 H 1.08999 * 109.47362 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47372 * 300.00461 * 1 2 3 22 22 H 1.08998 * 109.46596 * 60.00208 * 1 2 3 23 23 H 1.09002 * 109.47372 * 239.99539 * 2 1 3 24 24 H 1.09007 * 109.46679 * 119.99612 * 2 1 3 25 25 H 1.09004 * 110.48597 * 335.78340 * 6 4 3 26 26 H 1.08994 * 110.48679 * 98.42866 * 6 4 3 27 27 H 1.09005 * 110.75269 * 279.62515 * 7 6 4 28 28 H 1.08999 * 110.75712 * 156.25949 * 7 6 4 29 29 H 0.97001 * 119.99859 * 89.77491 * 10 8 7 30 30 H 0.97003 * 120.00119 * 180.02562 * 14 13 11 31 31 H 1.08998 * 110.02768 * 238.56949 * 19 4 3 32 32 H 1.08994 * 110.03051 * 359.97438 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9372 1.5057 0.0008 5 1 4.2404 0.8595 -0.8229 6 6 4.4000 0.9031 1.3433 7 6 5.7439 1.6153 1.6362 8 6 5.4791 3.0602 1.1452 9 1 4.9294 3.6261 1.8973 10 7 6.7406 3.7310 0.8214 11 6 7.4052 4.4417 1.7849 12 1 6.9992 4.5080 2.7835 13 6 8.6008 5.0768 1.4782 14 7 9.0959 4.9955 0.2614 15 14 9.5071 6.0468 2.7924 16 1 10.4530 5.1510 3.5049 17 1 10.2606 7.1574 2.1566 18 1 8.5280 6.6033 3.7603 19 6 4.6233 2.8773 -0.1251 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 3.6750 1.1186 2.1283 26 1 4.5511 -0.1720 1.2470 27 1 6.5551 1.1574 1.0700 28 1 5.9624 1.6041 2.7040 29 1 7.1051 3.6717 -0.0756 30 1 9.9316 5.4390 0.0471 31 1 5.2595 2.8966 -1.0100 32 1 3.8732 3.6657 -0.1872 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300384062.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:57 Heat of formation + Delta-G solvation = -11.278383 kcal Electronic energy + Delta-G solvation = -12384.839949 eV Core-core repulsion = 10277.927592 eV Total energy + Delta-G solvation = -2106.912357 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.71462 -33.62160 -32.87544 -30.61928 -28.31005 -26.74153 -23.72522 -22.98471 -20.22742 -19.57735 -17.21015 -16.24574 -15.52213 -15.11137 -14.83622 -14.16593 -13.66662 -13.06696 -12.92542 -12.61685 -12.42811 -11.83249 -11.54287 -11.43403 -11.03539 -10.78068 -10.68270 -10.58715 -10.42853 -10.17225 -9.91990 -9.66889 -9.60749 -8.86994 -7.54153 -6.94093 -5.75834 -3.04456 1.80212 2.70486 3.44667 3.49922 3.51612 4.59767 4.81463 4.86690 4.90546 4.94649 5.25832 5.34533 5.57448 5.58070 5.65367 5.77973 5.88343 5.91687 5.95889 6.01958 6.08409 6.26097 6.41493 6.52017 6.63886 6.85907 7.08756 7.72219 8.43092 9.53977 10.11902 10.46351 11.46944 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.081841 B = 0.005607 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.042784 B = 4992.342282 C = 5053.530632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 S -0.270 6.270 4 C -0.046 4.046 5 H 0.082 0.918 6 C -0.119 4.119 7 C -0.140 4.140 8 C 0.179 3.821 9 H 0.057 0.943 10 N -0.721 5.721 11 C -0.239 4.239 12 H 0.071 0.929 13 C -0.014 4.014 14 N -0.934 5.934 15 Si 0.907 3.093 16 H -0.290 1.290 17 H -0.291 1.291 18 H -0.282 1.282 19 C -0.108 4.108 20 H 0.066 0.934 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.384 0.616 30 H 0.255 0.745 31 H 0.076 0.924 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.636 -10.221 -0.481 17.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.241 4.241 3 S -0.042 6.042 4 C -0.176 4.176 5 H 0.101 0.899 6 C -0.159 4.159 7 C -0.181 4.181 8 C 0.068 3.932 9 H 0.075 0.925 10 N -0.361 5.361 11 C -0.371 4.371 12 H 0.089 0.911 13 C -0.209 4.209 14 N -0.582 5.582 15 Si 0.738 3.262 16 H -0.217 1.217 17 H -0.218 1.218 18 H -0.207 1.207 19 C -0.148 4.148 20 H 0.085 0.915 21 H 0.082 0.918 22 H 0.081 0.919 23 H 0.094 0.906 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.218 0.782 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.189 -9.165 -0.364 16.895 hybrid contribution 1.430 -0.707 0.325 1.628 sum -12.759 -9.872 -0.039 16.132 Atomic orbital electron populations 1.21503 0.92668 1.02099 1.03070 1.23249 0.99777 0.96471 1.04577 1.86931 1.07370 1.12003 1.97924 1.23782 0.91006 1.01706 1.01065 0.89934 1.22726 0.99146 0.98784 0.95247 1.23230 0.94928 0.98781 1.01198 1.21023 0.87606 0.91256 0.93352 0.92469 1.42458 1.21594 1.59891 1.12131 1.19277 1.02166 1.23545 0.92069 0.91114 1.24741 0.98281 1.01308 0.96610 1.69663 1.21638 1.48531 1.18407 0.86193 0.79743 0.79530 0.80769 1.21741 1.21780 1.20717 1.22297 0.98414 0.93170 1.00905 0.91548 0.91775 0.91858 0.90556 0.90297 0.90796 0.92473 0.91593 0.92032 0.78220 0.93513 0.90543 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.92 37.16 0.37 -0.81 16 2 C -0.09 -0.96 6.55 37.16 0.24 -0.72 16 3 S -0.27 -3.73 20.69 -107.50 -2.22 -5.96 16 4 C -0.05 -0.68 3.42 -25.61 -0.09 -0.77 16 5 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 6 C -0.12 -1.71 6.26 -25.07 -0.16 -1.87 16 7 C -0.14 -2.49 6.58 -24.74 -0.16 -2.65 16 8 C 0.18 3.63 3.52 -66.28 -0.23 3.40 16 9 H 0.06 1.20 8.09 -51.93 -0.42 0.78 16 10 N -0.72 -18.27 5.20 -51.83 -0.27 -18.53 16 11 C -0.24 -6.70 9.96 -15.06 -0.15 -6.85 16 12 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 13 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 14 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 15 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 17 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 C -0.11 -1.88 6.21 -25.61 -0.16 -2.04 16 20 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 24 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 25 H 0.07 1.05 7.81 -51.93 -0.41 0.64 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.38 10.27 7.56 -40.82 -0.31 9.96 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.08 1.37 7.73 -51.93 -0.40 0.96 16 32 H 0.07 1.23 7.59 -51.93 -0.39 0.83 16 LS Contribution 275.94 15.07 4.16 4.16 Total: -1.00 -29.60 275.94 -8.35 -37.95 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.28 Total: 5.34 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -0.43 Total: -12.80 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.45 Total: -46.18 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -2.22 Total: -5.96 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.60 -8.35 -37.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300384062.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.673 kcal (2) G-P(sol) polarization free energy of solvation -29.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds