Wall clock time and date at job start Mon Mar 30 2020 20:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81397 * 109.47213 * 2 1 4 4 C 1.81404 * 103.00042 * 179.97438 * 3 2 1 5 5 H 1.08998 * 110.05620 * 53.58110 * 4 3 2 6 6 C 1.54267 * 110.02896 * 292.16432 * 4 3 2 7 7 C 1.54891 * 104.19324 * 217.10701 * 6 4 3 8 8 C 1.54888 * 102.75120 * 37.94011 * 7 6 4 9 9 H 1.09001 * 110.59737 * 80.79460 * 8 7 6 10 10 N 1.46496 * 110.48901 * 203.37932 * 8 7 6 11 11 C 1.36937 * 120.00074 * 269.78068 * 10 8 7 12 12 H 1.08000 * 119.99815 * 359.97438 * 11 10 8 13 13 C 1.38808 * 119.99941 * 179.97438 * 11 10 8 14 14 N 1.31620 * 120.00177 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00001 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47332 * 89.99674 * 15 13 11 17 17 H 1.48507 * 109.47032 * 209.99773 * 15 13 11 18 18 H 1.48501 * 109.46937 * 329.99426 * 15 13 11 19 19 C 1.53876 * 110.03274 * 174.99925 * 4 3 2 20 20 H 1.08999 * 109.47362 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47372 * 300.00461 * 1 2 3 22 22 H 1.08998 * 109.46596 * 60.00208 * 1 2 3 23 23 H 1.09002 * 109.47372 * 239.99539 * 2 1 3 24 24 H 1.09007 * 109.46679 * 119.99612 * 2 1 3 25 25 H 1.09004 * 110.48597 * 335.78340 * 6 4 3 26 26 H 1.08994 * 110.48679 * 98.42866 * 6 4 3 27 27 H 1.09005 * 110.75269 * 279.62515 * 7 6 4 28 28 H 1.08999 * 110.75712 * 156.25949 * 7 6 4 29 29 H 0.97001 * 119.99859 * 89.77491 * 10 8 7 30 30 H 0.97003 * 120.00119 * 180.02562 * 14 13 11 31 31 H 1.08998 * 110.02768 * 238.56949 * 19 4 3 32 32 H 1.08994 * 110.03051 * 359.97438 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9372 1.5057 0.0008 5 1 4.2404 0.8595 -0.8229 6 6 4.4000 0.9031 1.3433 7 6 5.7439 1.6153 1.6362 8 6 5.4791 3.0602 1.1452 9 1 4.9294 3.6261 1.8973 10 7 6.7406 3.7310 0.8214 11 6 7.4052 4.4417 1.7849 12 1 6.9992 4.5080 2.7835 13 6 8.6008 5.0768 1.4782 14 7 9.0959 4.9955 0.2614 15 14 9.5071 6.0468 2.7924 16 1 10.4530 5.1510 3.5049 17 1 10.2606 7.1574 2.1566 18 1 8.5280 6.6033 3.7603 19 6 4.6233 2.8773 -0.1251 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 3.6750 1.1186 2.1283 26 1 4.5511 -0.1720 1.2470 27 1 6.5551 1.1574 1.0700 28 1 5.9624 1.6041 2.7040 29 1 7.1051 3.6717 -0.0756 30 1 9.9316 5.4390 0.0471 31 1 5.2595 2.8966 -1.0100 32 1 3.8732 3.6657 -0.1872 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300384062.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:57 Heat of formation + Delta-G solvation = -28.311721 kcal Electronic energy + Delta-G solvation = -12385.578570 eV Core-core repulsion = 10277.927592 eV Total energy + Delta-G solvation = -2107.650978 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.20591 -35.55915 -33.62687 -32.57506 -29.68825 -28.41594 -25.33793 -24.18858 -21.52007 -21.15957 -19.25330 -17.46539 -17.02046 -16.36741 -16.02531 -15.59592 -15.26467 -14.63111 -14.47650 -13.92863 -13.36081 -13.22013 -12.98035 -12.73082 -12.62158 -12.31757 -12.21949 -12.11132 -11.92327 -11.69976 -11.63365 -11.45348 -10.90765 -10.69125 -9.00793 -8.61867 -7.94960 -5.23636 0.77288 1.47416 1.49029 1.57551 1.68987 2.56164 3.36084 3.61681 3.63160 3.90749 4.08645 4.14573 4.40259 4.48707 4.52850 4.57478 4.57669 4.65365 4.82997 4.90377 4.93777 4.96282 5.07042 5.22270 5.26328 5.39561 5.46952 5.56057 6.27628 7.33272 8.09046 8.32581 9.28730 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.081841 B = 0.005607 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.042784 B = 4992.342282 C = 5053.530632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.082 4.082 3 S -0.304 6.304 4 C -0.038 4.038 5 H 0.095 0.905 6 C -0.104 4.104 7 C -0.133 4.133 8 C 0.169 3.831 9 H 0.047 0.953 10 N -0.734 5.734 11 C -0.242 4.242 12 H 0.075 0.925 13 C -0.075 4.075 14 N -0.971 5.971 15 Si 0.973 3.027 16 H -0.286 1.286 17 H -0.295 1.295 18 H -0.270 1.270 19 C -0.101 4.101 20 H 0.091 0.909 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.373 0.627 30 H 0.251 0.749 31 H 0.067 0.933 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.939 -11.670 0.235 18.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.230 4.230 3 S -0.077 6.077 4 C -0.168 4.168 5 H 0.113 0.887 6 C -0.144 4.144 7 C -0.174 4.174 8 C 0.060 3.940 9 H 0.065 0.935 10 N -0.374 5.374 11 C -0.374 4.374 12 H 0.093 0.907 13 C -0.267 4.267 14 N -0.622 5.622 15 Si 0.801 3.199 16 H -0.213 1.213 17 H -0.222 1.222 18 H -0.195 1.195 19 C -0.140 4.140 20 H 0.109 0.891 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.105 0.895 24 H 0.107 0.893 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.205 0.795 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.538 -10.637 0.377 18.834 hybrid contribution 1.719 -0.309 0.094 1.749 sum -13.819 -10.946 0.471 17.635 Atomic orbital electron populations 1.21522 0.91387 1.03542 1.02713 1.23369 1.00673 0.93335 1.05611 1.87091 1.06536 1.16012 1.98020 1.23613 0.91689 0.99755 1.01693 0.88696 1.22642 0.96755 0.99887 0.95080 1.23029 0.96738 0.97097 1.00554 1.21255 0.86007 0.92111 0.94677 0.93513 1.42638 1.23097 1.60446 1.11205 1.19648 1.02217 1.22884 0.92655 0.90740 1.25548 0.99444 1.03017 0.98693 1.69818 1.21998 1.49985 1.20355 0.85152 0.78476 0.77873 0.78354 1.21311 1.22198 1.19478 1.22127 0.97874 0.95131 0.98892 0.89074 0.92191 0.92215 0.89471 0.89264 0.90201 0.89781 0.92750 0.92425 0.79495 0.94009 0.91452 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 9.92 71.98 0.71 -1.20 16 2 C -0.08 -1.44 6.55 71.98 0.47 -0.97 16 3 S -0.30 -7.82 20.69 -56.49 -1.17 -8.99 16 4 C -0.04 -1.06 3.42 31.32 0.11 -0.95 16 5 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 6 C -0.10 -2.73 6.26 31.67 0.20 -2.53 16 7 C -0.13 -4.62 6.58 31.89 0.21 -4.41 16 8 C 0.17 6.88 3.52 46.06 0.16 7.04 16 9 H 0.05 1.99 8.09 -2.39 -0.02 1.97 16 10 N -0.73 -37.94 5.20 -317.88 -1.65 -39.59 16 11 C -0.24 -13.70 9.96 84.03 0.84 -12.86 16 12 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 13 C -0.07 -4.35 5.50 84.86 0.47 -3.89 16 14 N -0.97 -60.12 13.06 21.65 0.28 -59.84 16 15 Si 0.97 46.62 29.55 68.60 2.03 48.64 16 16 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 17 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 19 C -0.10 -3.49 6.21 31.32 0.19 -3.30 16 20 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 21 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.08 2.04 7.81 -2.38 -0.02 2.02 16 26 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.37 20.56 7.56 -92.71 -0.70 19.86 16 30 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.07 2.44 7.73 -2.39 -0.02 2.42 16 32 H 0.06 2.26 7.59 -2.39 -0.02 2.24 16 Total: -1.00 -63.41 275.94 3.22 -60.19 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.38 Total: 22.65 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 3.36 Total: -23.06 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -1.37 Total: -99.43 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.64 kcal Atomic # 16 Polarization: -7.82 SS G_CDS: -1.17 Total: -8.99 kcal Total: -63.41 3.22 -60.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300384062.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.878 kcal (2) G-P(sol) polarization free energy of solvation -63.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds