Wall clock time and date at job start Mon Mar 30 2020 20:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81407 * 102.99959 * 2 1 4 4 H 1.08999 * 109.46902 * 304.99912 * 3 2 1 5 5 C 1.53006 * 109.46799 * 65.00087 * 3 2 1 6 6 C 1.53006 * 109.46452 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.46904 * 299.99097 * 6 5 3 8 8 C 1.53006 * 109.47005 * 60.00604 * 7 6 5 9 9 C 1.53000 * 109.47260 * 299.99894 * 8 7 6 10 10 H 1.08999 * 109.46803 * 299.99759 * 9 8 7 11 11 N 1.46496 * 109.47071 * 179.97438 * 9 8 7 12 12 C 1.36945 * 119.99718 * 85.00073 * 11 9 8 13 13 H 1.07997 * 119.99756 * 359.97438 * 12 11 9 14 14 C 1.38805 * 119.99878 * 179.97438 * 12 11 9 15 15 N 1.31624 * 120.00257 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99929 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47187 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47141 * 300.00154 * 16 14 12 19 19 H 1.48498 * 109.47018 * 60.00200 * 16 14 12 20 20 H 1.09001 * 109.47087 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47202 * 299.99783 * 1 2 3 22 22 H 1.08997 * 109.46880 * 59.99680 * 1 2 3 23 23 H 1.08996 * 109.47042 * 60.00206 * 5 3 2 24 24 H 1.09003 * 109.46576 * 299.99685 * 5 3 2 25 25 H 1.09002 * 109.46761 * 180.02562 * 6 5 3 26 26 H 1.08999 * 109.47388 * 59.99741 * 6 5 3 27 27 H 1.08996 * 109.47865 * 300.00956 * 7 6 5 28 28 H 1.09005 * 109.47248 * 180.02562 * 7 6 5 29 29 H 1.09002 * 109.47329 * 179.97438 * 8 7 6 30 30 H 1.09004 * 109.46919 * 59.99983 * 8 7 6 31 31 H 0.96996 * 120.00499 * 264.99803 * 11 9 8 32 32 H 0.97001 * 119.99885 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2542 -0.8418 5 6 1.7427 2.4016 1.3074 6 6 2.0864 3.8926 1.3071 7 6 3.6012 4.0667 1.1812 8 6 4.0806 3.4326 -0.1261 9 6 3.7369 1.9417 -0.1259 10 1 4.2298 1.4554 0.7159 11 7 4.1953 1.3347 -1.3779 12 6 5.4894 0.9022 -1.4956 13 1 6.1719 1.0090 -0.6655 14 6 5.9236 0.3266 -2.6816 15 7 5.0919 0.1970 -3.6935 16 14 7.6890 -0.2627 -2.8423 17 1 7.8985 -0.8348 -4.1965 18 1 8.6132 0.8817 -2.6394 19 1 7.9583 -1.3041 -1.8185 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 2.2354 1.9150 2.1492 24 1 0.6635 2.2778 1.3969 25 1 1.7453 4.3442 2.2387 26 1 1.5935 4.3789 0.4653 27 1 4.0941 3.5803 2.0229 28 1 3.8461 5.1289 1.1814 29 1 5.1597 3.5570 -0.2161 30 1 3.5877 3.9190 -0.9680 31 1 3.5824 1.2391 -2.1236 32 1 5.3955 -0.2049 -4.5225 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300384946.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:01 Heat of formation + Delta-G solvation = -10.003821 kcal Electronic energy + Delta-G solvation = -12955.655619 eV Core-core repulsion = 10848.798531 eV Total energy + Delta-G solvation = -2106.857088 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.15553 -33.96267 -31.14495 -30.60191 -28.43199 -27.82742 -23.65948 -22.28497 -21.04265 -19.49097 -17.05615 -16.01647 -15.03023 -14.27335 -14.11219 -13.95313 -13.54385 -13.19516 -13.09331 -12.93585 -12.38247 -12.12693 -11.52801 -11.08325 -10.92846 -10.86218 -10.73178 -10.43589 -10.24018 -10.12039 -9.66385 -9.58593 -9.19331 -8.77581 -7.10442 -6.81124 -5.66764 -2.95060 2.20356 3.14295 3.49667 3.53967 3.54786 4.64028 4.98509 5.02013 5.25302 5.37474 5.42677 5.49720 5.58059 5.68839 5.75037 5.84967 5.92154 5.94639 5.96431 6.11701 6.24657 6.41973 6.47597 6.58821 6.60439 6.89500 7.07263 7.76960 8.50544 9.62382 10.18726 10.54826 11.55579 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.030411 B = 0.010064 C = 0.008080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.491025 B = 2781.513040 C = 3464.309029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.223 6.223 3 C -0.057 4.057 4 H 0.079 0.921 5 C -0.109 4.109 6 C -0.114 4.114 7 C -0.119 4.119 8 C -0.131 4.131 9 C 0.199 3.801 10 H 0.053 0.947 11 N -0.717 5.717 12 C -0.235 4.235 13 H 0.068 0.932 14 C -0.011 4.011 15 N -0.930 5.930 16 Si 0.904 3.096 17 H -0.292 1.292 18 H -0.287 1.287 19 H -0.287 1.287 20 H 0.093 0.907 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.386 0.614 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.427 5.392 9.524 13.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.006 5.994 3 C -0.187 4.187 4 H 0.098 0.902 5 C -0.149 4.149 6 C -0.153 4.153 7 C -0.158 4.158 8 C -0.173 4.173 9 C 0.088 3.912 10 H 0.071 0.929 11 N -0.357 5.357 12 C -0.367 4.367 13 H 0.086 0.914 14 C -0.207 4.207 15 N -0.578 5.578 16 Si 0.735 3.265 17 H -0.218 1.218 18 H -0.214 1.214 19 H -0.213 1.213 20 H 0.111 0.889 21 H 0.085 0.915 22 H 0.089 0.911 23 H 0.091 0.909 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.221 0.779 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.589 4.371 9.488 12.912 hybrid contribution -0.122 0.675 -0.473 0.833 sum -7.710 5.046 9.015 12.891 Atomic orbital electron populations 1.23416 0.97821 1.05549 1.03906 1.87497 1.02953 1.11313 1.97627 1.23635 1.02110 0.93181 0.99788 0.90226 1.21844 1.00083 0.95827 0.97174 1.21542 0.96977 0.95684 1.01121 1.21570 0.95103 1.00000 0.99078 1.22261 1.01494 0.97811 0.95725 1.19951 0.87803 0.91936 0.91545 0.92920 1.42378 1.10980 1.71218 1.11139 1.19136 0.87559 1.32150 0.97830 0.91419 1.24697 0.97718 1.01891 0.96414 1.69663 1.34152 1.50093 1.03901 0.86315 0.84924 0.78543 0.76686 1.21777 1.21426 1.21331 0.88865 0.91457 0.91139 0.90931 0.92589 0.92361 0.92239 0.92263 0.92696 0.91494 0.92613 0.77926 0.93610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 10.45 101.05 1.06 -0.81 16 2 S -0.22 -4.12 21.38 -107.50 -2.30 -6.42 16 3 C -0.06 -0.99 2.21 -26.73 -0.06 -1.05 16 4 H 0.08 1.41 8.14 -51.92 -0.42 0.98 16 5 C -0.11 -1.50 5.11 -26.72 -0.14 -1.64 16 6 C -0.11 -1.42 5.92 -26.73 -0.16 -1.58 16 7 C -0.12 -1.66 5.92 -26.73 -0.16 -1.82 16 8 C -0.13 -2.33 5.50 -26.73 -0.15 -2.48 16 9 C 0.20 4.04 2.21 -67.93 -0.15 3.89 16 10 H 0.05 1.14 8.08 -51.93 -0.42 0.72 16 11 N -0.72 -18.24 4.66 -53.43 -0.25 -18.49 16 12 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 13 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 14 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 15 N -0.93 -28.59 13.06 55.49 0.72 -27.86 16 16 Si 0.90 22.87 29.55 -169.99 -5.02 17.85 16 17 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H 0.09 1.14 8.14 -51.92 -0.42 0.72 16 21 H 0.07 0.78 7.14 -51.92 -0.37 0.41 16 22 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 23 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.06 0.69 6.92 -51.93 -0.36 0.33 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.39 10.59 7.80 -40.82 -0.32 10.28 16 32 H 0.25 7.59 8.31 -40.82 -0.34 7.26 16 LS Contribution 270.23 15.07 4.07 4.07 Total: -1.00 -30.23 270.23 -8.01 -38.24 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.24 Total: 5.31 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 0.00 Total: -12.69 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.48 Total: -46.35 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Atomic # 16 Polarization: -4.12 SS G_CDS: -2.30 Total: -6.42 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.23 -8.01 -38.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300384946.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.239 kcal (2) G-P(sol) polarization free energy of solvation -30.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds