Wall clock time and date at job start Mon Mar 30 2020 20:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46413 * 2 1 4 4 C 1.50694 * 109.47268 * 240.00009 * 2 1 3 5 5 H 1.07996 * 119.99877 * 240.67130 * 4 2 1 6 6 C 1.37880 * 120.00160 * 60.67149 * 4 2 1 7 7 N 1.31512 * 119.99940 * 207.40757 * 6 4 2 8 8 Si 1.86804 * 119.99919 * 27.40631 * 6 4 2 9 9 H 1.48497 * 109.46781 * 92.58818 * 8 6 4 10 10 H 1.48498 * 109.46718 * 212.58706 * 8 6 4 11 11 H 1.48499 * 109.46987 * 332.58568 * 8 6 4 12 12 N 1.46894 * 109.47171 * 119.99556 * 2 1 3 13 13 C 1.47846 * 110.99968 * 58.40364 * 12 2 1 14 14 C 1.54908 * 104.79869 * 213.63602 * 13 12 2 15 15 C 1.55144 * 101.65160 * 37.07076 * 14 13 12 16 16 O 1.42892 * 110.70410 * 82.73042 * 15 14 13 17 17 C 1.52998 * 110.85214 * 205.89304 * 15 14 13 18 18 O 1.42893 * 109.47621 * 298.68672 * 17 15 14 19 19 C 1.47447 * 111.00385 * 297.56569 * 12 2 1 20 20 H 1.09005 * 109.46954 * 173.31099 * 1 2 3 21 21 H 1.09004 * 109.47575 * 53.31824 * 1 2 3 22 22 H 1.09003 * 109.47475 * 293.31052 * 1 2 3 23 23 H 0.96998 * 119.99923 * 180.02562 * 7 6 4 24 24 H 1.09000 * 110.37365 * 332.46897 * 13 12 2 25 25 H 1.09001 * 110.37530 * 94.80682 * 13 12 2 26 26 H 1.09001 * 110.98944 * 278.98079 * 14 13 12 27 27 H 1.08997 * 111.02248 * 155.17460 * 14 13 12 28 28 H 0.96698 * 114.00372 * 66.40361 * 16 15 14 29 29 H 1.09001 * 109.46949 * 58.68785 * 17 15 14 30 30 H 1.09000 * 109.46841 * 178.68513 * 17 15 14 31 31 H 0.96700 * 114.00256 * 180.02562 * 18 17 15 32 32 H 1.08998 * 109.88378 * 242.66493 * 19 12 2 33 33 H 1.09000 * 109.88556 * 3.68372 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6443 -1.5947 -1.1313 6 6 1.7108 -0.2313 -2.4827 7 7 1.6518 -1.0546 -3.5065 8 14 1.3588 1.5872 -2.7250 9 1 2.6105 2.2864 -3.1117 10 1 0.3455 1.7566 -3.7973 11 1 0.8404 2.1640 -1.4586 12 7 2.0197 -0.6924 1.1994 13 6 1.5145 -2.0808 1.2531 14 6 1.3219 -2.3738 2.7620 15 6 0.8115 -1.0049 3.2842 16 8 -0.5944 -0.8729 3.0651 17 6 1.1447 -0.8292 4.7671 18 8 0.4972 -1.8527 5.5255 19 6 1.5953 0.0092 2.4249 20 1 -0.3633 -1.0207 -0.1197 21 1 -0.3634 0.6139 -0.8242 22 1 -0.3634 0.4067 0.9438 23 1 1.4260 -0.7176 -4.3875 24 1 0.5631 -2.1591 0.7268 25 1 2.2443 -2.7671 0.8235 26 1 2.2681 -2.6426 3.2314 27 1 0.5761 -3.1534 2.9168 28 1 -1.1325 -1.4880 3.5819 29 1 2.2233 -0.8999 4.9079 30 1 0.7975 0.1475 5.1042 31 1 0.6643 -1.8028 6.4766 32 1 2.4697 0.3614 2.9721 33 1 0.9552 0.8528 2.1664 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306317541.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:10 Heat of formation + Delta-G solvation = -83.851259 kcal Electronic energy + Delta-G solvation = -15517.395052 eV Core-core repulsion = 12964.582828 eV Total energy + Delta-G solvation = -2552.812224 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.49777 -36.82688 -35.32665 -33.03251 -31.25394 -29.05913 -28.12376 -25.33568 -24.33827 -21.84331 -20.20856 -19.09533 -17.41383 -16.92040 -16.16758 -15.38810 -14.99902 -14.73093 -14.02948 -13.73176 -13.04657 -12.90766 -12.56849 -12.15972 -12.08984 -11.70100 -11.29431 -11.15952 -10.87492 -10.77941 -10.30204 -10.20349 -10.12924 -10.05213 -9.61792 -9.51536 -9.20964 -8.14102 -7.29561 -6.10894 -3.93228 3.33521 3.42792 3.46630 4.04333 4.35020 4.49234 4.79621 4.96360 5.06668 5.19699 5.27367 5.43396 5.60122 5.83830 6.00518 6.15037 6.20466 6.32438 6.49016 6.60254 6.69458 6.80202 6.86456 7.09921 7.41641 7.44123 7.69065 7.89961 7.99743 8.14700 8.70018 9.07675 9.62257 11.02046 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.057297 B = 0.008479 C = 0.008083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.568172 B = 3301.525840 C = 3463.230594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.181 3.819 3 H 0.032 0.968 4 C -0.519 4.519 5 H 0.078 0.922 6 C 0.083 3.917 7 N -0.879 5.879 8 Si 0.855 3.145 9 H -0.280 1.280 10 H -0.289 1.289 11 H -0.261 1.261 12 N -0.510 5.510 13 C 0.057 3.943 14 C -0.147 4.147 15 C 0.114 3.886 16 O -0.546 6.546 17 C 0.057 3.943 18 O -0.573 6.573 19 C 0.051 3.949 20 H 0.052 0.948 21 H 0.040 0.960 22 H 0.036 0.964 23 H 0.263 0.737 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.375 0.625 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.378 0.622 32 H 0.077 0.923 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.104 0.435 16.023 16.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.073 3.927 3 H 0.050 0.950 4 C -0.556 4.556 5 H 0.096 0.904 6 C -0.120 4.120 7 N -0.515 5.515 8 Si 0.681 3.319 9 H -0.206 1.206 10 H -0.215 1.215 11 H -0.185 1.185 12 N -0.234 5.234 13 C -0.071 4.071 14 C -0.185 4.185 15 C 0.072 3.928 16 O -0.352 6.352 17 C -0.021 4.021 18 O -0.379 6.379 19 C -0.078 4.078 20 H 0.071 0.929 21 H 0.059 0.941 22 H 0.055 0.945 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.222 0.778 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.225 0.775 32 H 0.095 0.905 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.588 0.706 14.756 14.858 hybrid contribution -1.012 0.797 0.658 1.447 sum -2.601 1.503 15.414 15.704 Atomic orbital electron populations 1.22690 1.00515 1.00996 0.99001 1.19813 0.89689 0.94570 0.88664 0.95026 1.20762 1.33533 1.13299 0.87995 0.90446 1.24791 0.94098 0.97072 0.96057 1.70123 1.46254 1.34117 1.00992 0.87224 0.78091 0.88399 0.78180 1.20576 1.21515 1.18540 1.63870 1.56656 1.01734 1.01111 1.22872 1.00082 0.90942 0.93161 1.23297 1.01136 0.96291 0.97810 1.22537 0.82322 0.96804 0.91136 1.86565 1.16172 1.62680 1.69739 1.22880 0.96557 0.90333 0.92355 1.86419 1.75138 1.53578 1.22721 1.22809 0.96554 0.96283 0.92130 0.92924 0.94110 0.94463 0.92771 0.92154 0.90853 0.90847 0.91114 0.77806 0.92517 0.93107 0.77517 0.90502 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 8.07 37.16 0.30 -3.77 16 2 C 0.18 4.45 1.77 -68.87 -0.12 4.33 16 3 H 0.03 0.81 6.67 -51.93 -0.35 0.46 16 4 C -0.52 -14.80 8.49 -34.44 -0.29 -15.09 16 5 H 0.08 2.40 7.59 -52.49 -0.40 2.00 16 6 C 0.08 2.42 5.20 -17.82 -0.09 2.33 16 7 N -0.88 -26.81 13.96 55.43 0.77 -26.03 16 8 Si 0.85 21.59 26.13 -169.99 -4.44 17.15 16 9 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 11 H -0.26 -6.35 5.91 56.52 0.33 -6.02 16 12 N -0.51 -11.00 5.18 -224.68 -1.16 -12.17 16 13 C 0.06 1.15 5.52 -2.30 -0.01 1.14 16 14 C -0.15 -2.35 6.00 -24.59 -0.15 -2.50 16 15 C 0.11 1.74 1.05 -88.80 -0.09 1.65 16 16 O -0.55 -8.77 12.18 -41.06 -0.50 -9.27 16 17 C 0.06 0.67 6.11 37.16 0.23 0.90 16 18 O -0.57 -6.09 12.97 -41.06 -0.53 -6.63 16 19 C 0.05 0.91 5.63 -2.84 -0.02 0.89 16 20 H 0.05 1.27 6.22 -51.93 -0.32 0.95 16 21 H 0.04 0.98 5.58 -51.93 -0.29 0.69 16 22 H 0.04 0.81 5.38 -51.93 -0.28 0.53 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.06 1.34 5.55 -51.93 -0.29 1.05 16 25 H 0.07 1.54 7.96 -51.93 -0.41 1.13 16 26 H 0.07 1.10 8.05 -51.93 -0.42 0.68 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.37 4.87 8.68 45.56 0.40 5.26 16 29 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.38 2.22 9.12 45.56 0.42 2.63 16 32 H 0.08 1.20 7.79 -51.93 -0.40 0.80 16 33 H 0.07 1.24 6.15 -51.93 -0.32 0.92 16 LS Contribution 255.78 15.07 3.85 3.85 Total: -1.00 -32.07 255.78 -5.40 -37.47 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -3.14 Total: 5.76 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -0.25 Total: -10.13 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: -0.39 Total: -38.20 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -1.03 Total: -15.89 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.44 Total: 17.15 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -32.07 -5.40 -37.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306317541.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.384 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds