Wall clock time and date at job start Mon Mar 30 2020 20:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47016 * 2 1 4 4 C 1.50702 * 109.46902 * 240.00406 * 2 1 3 5 5 H 1.07998 * 119.99876 * 240.00151 * 4 2 1 6 6 C 1.37875 * 120.00056 * 59.99919 * 4 2 1 7 7 N 1.31508 * 120.00316 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99810 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47278 * 180.02562 * 8 6 4 10 10 H 1.48497 * 109.47429 * 300.00437 * 8 6 4 11 11 H 1.48503 * 109.47009 * 60.00395 * 8 6 4 12 12 N 1.46898 * 109.47198 * 120.00265 * 2 1 3 13 13 C 1.47907 * 110.99709 * 63.41506 * 12 2 1 14 14 C 1.53998 * 107.05490 * 214.15537 * 13 12 2 15 15 H 1.09000 * 110.30805 * 242.20848 * 14 13 12 16 16 O 1.42905 * 110.30667 * 120.13966 * 14 13 12 17 17 C 1.54594 * 105.14025 * 1.22734 * 14 13 12 18 18 C 1.48533 * 110.99953 * 306.02054 * 12 2 1 19 19 H 1.08996 * 110.66852 * 41.28457 * 18 12 2 20 20 C 1.53004 * 110.66243 * 278.15455 * 18 12 2 21 21 O 1.42906 * 109.46832 * 295.72406 * 20 18 12 22 22 H 1.08998 * 109.47257 * 186.50698 * 1 2 3 23 23 H 1.09001 * 109.47090 * 306.51073 * 1 2 3 24 24 H 1.09005 * 109.47333 * 66.50712 * 1 2 3 25 25 H 0.96997 * 120.00245 * 180.02562 * 7 6 4 26 26 H 1.08994 * 109.91639 * 333.50380 * 13 12 2 27 27 H 1.08992 * 109.91736 * 94.80646 * 13 12 2 28 28 H 0.96692 * 113.99842 * 61.45733 * 16 14 13 29 29 H 1.08994 * 110.72838 * 140.31863 * 17 14 13 30 30 H 1.09007 * 110.72300 * 263.59953 * 17 14 13 31 31 H 1.08989 * 109.47257 * 55.72390 * 20 18 12 32 32 H 1.08999 * 109.46972 * 175.73033 * 20 18 12 33 33 H 0.96708 * 113.99509 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.8278 -0.4190 -5.2206 10 1 3.8074 -1.1189 -4.0078 11 1 1.8279 -2.5196 -4.0083 12 7 2.0197 -0.6925 1.1994 13 6 1.6137 -2.1148 1.1930 14 6 1.3562 -2.5175 2.6569 15 1 2.0463 -3.3051 2.9596 16 8 0.0050 -2.9529 2.8211 17 6 1.6099 -1.2335 3.4796 18 6 1.4283 -0.1081 2.4302 19 1 0.3713 0.1126 2.2818 20 6 2.1904 1.1503 2.8504 21 8 3.5303 0.8002 3.2030 22 1 -0.3634 -1.0210 0.1165 23 1 -0.3633 0.6114 0.8260 24 1 -0.3634 0.4097 -0.9425 25 1 0.7089 1.1615 -3.4844 26 1 0.7023 -2.2381 0.6082 27 1 2.4125 -2.7270 0.7745 28 1 -0.2244 -3.7304 2.2940 29 1 0.8762 -1.1367 4.2798 30 1 2.6232 -1.2266 3.8811 31 1 2.2059 1.8591 2.0226 32 1 1.6959 1.6048 3.7089 33 1 4.0729 1.5510 3.4807 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306752560.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:58 Heat of formation + Delta-G solvation = -87.498622 kcal Electronic energy + Delta-G solvation = -15576.115845 eV Core-core repulsion = 13023.145459 eV Total energy + Delta-G solvation = -2552.970386 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.11441 -36.25991 -35.44310 -33.14235 -30.77587 -29.14050 -27.11415 -25.20200 -24.46478 -21.62405 -20.15431 -18.57030 -17.34360 -16.80240 -15.92280 -15.36154 -14.47440 -14.32532 -14.00482 -13.56262 -12.97206 -12.89592 -12.54797 -11.97924 -11.71712 -11.35934 -11.09952 -10.82745 -10.66023 -10.46681 -10.29601 -10.20577 -10.05074 -9.84553 -9.46771 -9.36895 -8.83404 -8.38137 -7.14790 -6.00646 -4.04997 3.32140 3.36363 3.39554 4.40876 4.57038 4.77115 4.98510 5.20295 5.30274 5.39505 5.55571 5.79969 5.90364 5.97686 6.06615 6.32840 6.37660 6.57522 6.58800 6.66842 6.80845 6.92292 7.11972 7.42441 7.72205 7.85242 7.97163 8.06442 8.11600 8.40808 8.58157 9.00983 9.60105 11.06083 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.032019 B = 0.010212 C = 0.009010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.281275 B = 2741.272894 C = 3106.752226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.201 3.799 3 H 0.040 0.960 4 C -0.501 4.501 5 H 0.060 0.940 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.278 1.278 12 N -0.492 5.492 13 C 0.017 3.983 14 C 0.086 3.914 15 H 0.056 0.944 16 O -0.571 6.571 17 C -0.105 4.105 18 C 0.053 3.947 19 H 0.069 0.931 20 C 0.095 3.905 21 O -0.556 6.556 22 H 0.030 0.970 23 H 0.011 0.989 24 H 0.090 0.910 25 H 0.261 0.739 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.373 0.627 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.364 -2.403 9.481 9.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.094 3.906 3 H 0.058 0.942 4 C -0.539 4.539 5 H 0.078 0.922 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.204 1.204 12 N -0.216 5.216 13 C -0.111 4.111 14 C 0.027 3.973 15 H 0.074 0.926 16 O -0.376 6.376 17 C -0.143 4.143 18 C -0.055 4.055 19 H 0.087 0.913 20 C 0.017 3.983 21 O -0.360 6.360 22 H 0.049 0.951 23 H 0.030 0.970 24 H 0.109 0.891 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.220 0.780 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 0.625 -2.319 9.565 9.862 hybrid contribution -0.447 -0.331 -1.307 1.421 sum 0.177 -2.650 8.258 8.675 Atomic orbital electron populations 1.22442 1.00950 0.98419 1.01605 1.19441 0.89696 0.94972 0.86481 0.94192 1.21082 1.30571 1.12469 0.89787 0.92174 1.24926 0.95222 0.95132 0.98982 1.69867 1.36997 1.23022 1.23481 0.86588 0.79270 0.79572 0.82126 1.21383 1.20225 1.20406 1.65063 1.54108 1.00622 1.01850 1.23414 1.00692 0.92678 0.94329 1.22825 0.82299 0.96152 0.96060 0.92626 1.86490 1.29773 1.50870 1.70472 1.22420 1.02188 0.92598 0.97045 1.22883 0.96653 0.93799 0.92199 0.91343 1.21984 0.82741 0.96383 0.97185 1.86582 1.23376 1.36846 1.89161 0.95150 0.97023 0.89112 0.92956 0.92021 0.91124 0.77975 0.91504 0.89054 0.93345 0.94578 0.78966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.30 8.22 37.16 0.31 -4.00 16 2 C 0.20 5.13 2.39 -68.86 -0.16 4.97 16 3 H 0.04 1.13 7.47 -51.93 -0.39 0.74 16 4 C -0.50 -13.85 7.99 -34.44 -0.28 -14.13 16 5 H 0.06 1.67 7.06 -52.49 -0.37 1.30 16 6 C 0.06 1.62 5.28 -17.82 -0.09 1.52 16 7 N -0.89 -25.56 11.29 55.43 0.63 -24.94 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.46 16 9 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 12 N -0.49 -10.98 5.00 -216.10 -1.08 -12.06 16 13 C 0.02 0.35 5.16 -2.75 -0.01 0.34 16 14 C 0.09 1.46 4.36 -25.37 -0.11 1.35 16 15 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 16 O -0.57 -9.25 13.25 -35.23 -0.47 -9.72 16 17 C -0.10 -1.79 6.18 -24.87 -0.15 -1.95 16 18 C 0.05 1.03 2.52 -65.78 -0.17 0.86 16 19 H 0.07 1.39 5.58 -51.93 -0.29 1.10 16 20 C 0.10 1.61 6.95 37.16 0.26 1.87 16 21 O -0.56 -9.13 12.38 -35.23 -0.44 -9.56 16 22 H 0.03 0.72 5.98 -51.93 -0.31 0.41 16 23 H 0.01 0.25 6.33 -51.93 -0.33 -0.08 16 24 H 0.09 2.46 5.92 -51.93 -0.31 2.15 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.06 1.33 5.40 -51.93 -0.28 1.05 16 27 H 0.07 1.44 7.81 -51.93 -0.41 1.03 16 28 H 0.37 4.53 9.11 45.56 0.41 4.94 16 29 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 30 H 0.09 1.55 7.03 -51.93 -0.36 1.19 16 31 H 0.05 0.88 7.42 -51.94 -0.39 0.50 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.37 4.12 9.12 45.56 0.42 4.54 16 LS Contribution 258.73 15.07 3.90 3.90 Total: -1.00 -31.18 258.73 -5.89 -37.07 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -3.00 Total: 8.00 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -0.41 Total: -9.16 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: -0.45 Total: -37.00 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.90 Total: -19.28 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.18 -5.89 -37.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306752560.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.426 kcal (2) G-P(sol) polarization free energy of solvation -31.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds