Wall clock time and date at job start Mon Mar 30 2020 20:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47399 * 2 1 4 4 C 1.50706 * 109.46850 * 240.00312 * 2 1 3 5 5 H 1.08002 * 120.00152 * 239.99676 * 4 2 1 6 6 C 1.37883 * 119.99899 * 59.99989 * 4 2 1 7 7 N 1.31514 * 119.99808 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99984 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47152 * 90.00398 * 8 6 4 10 10 H 1.48505 * 109.47338 * 209.99997 * 8 6 4 11 11 H 1.48498 * 109.47478 * 330.00292 * 8 6 4 12 12 N 1.46899 * 109.47339 * 120.00653 * 2 1 3 13 13 C 1.40445 * 110.99807 * 58.95052 * 12 2 1 14 14 C 1.54276 * 111.67836 * 188.30222 * 13 12 2 15 15 O 1.40632 * 109.13576 * 282.77921 * 14 13 12 16 16 C 1.44083 * 116.72852 * 93.90456 * 15 14 13 17 17 C 1.53622 * 112.55133 * 318.11208 * 16 15 14 18 18 H 1.09003 * 108.97113 * 79.17767 * 17 16 15 19 19 O 1.42899 * 109.03148 * 198.06305 * 17 16 15 20 20 C 1.47630 * 111.00156 * 187.25707 * 12 2 1 21 21 H 1.08997 * 109.46914 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46723 * 299.99446 * 1 2 3 23 23 H 1.08999 * 109.47021 * 59.99558 * 1 2 3 24 24 H 0.97004 * 119.99463 * 180.02562 * 7 6 4 25 25 H 1.08996 * 109.03811 * 308.87093 * 13 12 2 26 26 H 1.08999 * 109.03740 * 67.74303 * 13 12 2 27 27 H 1.09002 * 109.52939 * 42.67919 * 14 13 12 28 28 H 1.09005 * 109.52859 * 162.88809 * 14 13 12 29 29 H 1.09001 * 108.86713 * 197.32133 * 16 15 14 30 30 H 1.08998 * 108.86781 * 78.90278 * 16 15 14 31 31 H 0.96705 * 114.00399 * 302.20782 * 19 17 16 32 32 H 1.09002 * 109.59070 * 273.28337 * 20 12 2 33 33 H 1.09002 * 109.58830 * 33.56707 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6533 -1.5885 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6033 8 14 2.3223 -1.1193 -4.0081 9 1 1.3445 -2.1612 -4.4126 10 1 2.4871 -0.1399 -5.1122 11 1 3.6306 -1.7564 -3.7123 12 7 2.0197 -0.6926 1.1993 13 6 1.5499 -2.0154 1.2437 14 6 1.8808 -2.6929 2.5897 15 8 3.2369 -3.0651 2.5973 16 6 4.1630 -2.1276 3.1799 17 6 3.8604 -0.6753 2.7809 18 1 3.0357 -0.3049 3.3898 19 8 5.0176 0.1263 3.0270 20 6 3.4851 -0.5634 1.3237 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 0.7088 1.1616 -3.4844 25 1 0.4691 -2.0138 1.1026 26 1 2.0118 -2.5840 0.4365 27 1 1.6898 -1.9955 3.4053 28 1 1.2590 -3.5795 2.7139 29 1 5.1720 -2.3799 2.8537 30 1 4.1141 -2.2123 4.2655 31 1 5.3217 0.1067 3.9447 32 1 3.9714 -1.3588 0.7589 33 1 3.8007 0.4053 0.9362 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306968666.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:20 Heat of formation + Delta-G solvation = -82.500629 kcal Electronic energy + Delta-G solvation = -15607.098239 eV Core-core repulsion = 13054.344583 eV Total energy + Delta-G solvation = -2552.753656 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.41054 -36.54374 -36.25709 -32.74007 -30.69447 -29.54838 -26.87505 -25.49948 -25.05901 -21.77571 -20.35119 -19.48121 -17.22979 -16.57891 -16.12172 -15.70100 -14.90664 -14.68714 -14.33169 -13.45966 -13.34125 -13.00998 -12.47285 -12.31503 -11.51876 -11.40683 -11.22287 -10.99291 -10.85183 -10.70700 -10.58577 -10.09442 -9.98752 -9.68970 -9.53333 -9.17952 -9.07900 -8.39448 -7.15179 -5.99133 -4.11676 3.28334 3.35352 3.39595 3.98625 4.34784 4.42238 4.94140 5.17748 5.25224 5.27580 5.52428 5.71704 5.77029 5.81648 5.90237 6.14213 6.40038 6.51091 6.71548 6.78962 6.93428 7.03505 7.17769 7.53690 7.61504 7.74531 7.80242 7.97846 8.13776 8.33376 8.55982 8.97361 9.56298 11.01235 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.034471 B = 0.009492 C = 0.009307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.085600 B = 2948.998297 C = 3007.884810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.214 3.786 3 H 0.040 0.960 4 C -0.542 4.542 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.887 5.887 8 Si 0.889 3.111 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.552 5.552 13 C 0.043 3.957 14 C 0.059 3.941 15 O -0.384 6.384 16 C 0.037 3.963 17 C 0.075 3.925 18 H 0.065 0.935 19 O -0.561 6.561 20 C 0.082 3.918 21 H 0.029 0.971 22 H 0.015 0.985 23 H 0.086 0.914 24 H 0.261 0.739 25 H 0.081 0.919 26 H 0.038 0.962 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.370 0.630 32 H 0.045 0.955 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.962 -3.922 10.578 11.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.109 3.891 3 H 0.058 0.942 4 C -0.581 4.581 5 H 0.074 0.926 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.717 3.283 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.277 5.277 13 C -0.087 4.087 14 C -0.018 4.018 15 O -0.303 6.303 16 C -0.040 4.040 17 C 0.015 3.985 18 H 0.082 0.918 19 O -0.364 6.364 20 C -0.046 4.046 21 H 0.047 0.953 22 H 0.034 0.966 23 H 0.104 0.896 24 H 0.071 0.929 25 H 0.100 0.900 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.216 0.784 32 H 0.063 0.937 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.685 -3.629 10.104 11.067 hybrid contribution 0.587 -0.773 -0.880 1.310 sum 3.272 -4.403 9.225 10.732 Atomic orbital electron populations 1.21875 0.97720 0.99151 1.00449 1.19279 0.92170 0.93950 0.83692 0.94207 1.21722 1.31809 1.12937 0.91646 0.92567 1.24904 0.94832 0.94818 0.98910 1.69880 1.36545 1.22687 1.23487 0.86642 0.79327 0.79476 0.82859 1.20693 1.21177 1.19991 1.59514 1.09018 1.15632 1.43563 1.21542 1.01164 0.90353 0.95646 1.22748 0.81908 0.99037 0.98116 1.87488 1.17309 1.43221 1.82261 1.23624 0.93910 0.90134 0.96373 1.22449 0.87372 0.88954 0.99679 0.91753 1.86623 1.47242 1.70053 1.32529 1.21302 0.89230 1.02606 0.91504 0.95251 0.96591 0.89582 0.92890 0.90048 0.94383 0.92946 0.89932 0.89311 0.93774 0.78377 0.93670 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.68 37.16 0.32 -2.89 16 2 C 0.21 5.38 2.27 -68.86 -0.16 5.23 16 3 H 0.04 1.11 7.88 -51.93 -0.41 0.70 16 4 C -0.54 -14.77 7.38 -34.44 -0.25 -15.02 16 5 H 0.06 1.57 6.36 -52.49 -0.33 1.23 16 6 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 7 N -0.89 -25.15 11.32 55.43 0.63 -24.53 16 8 Si 0.89 21.51 29.54 -169.99 -5.02 16.48 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.55 -11.87 4.07 -232.96 -0.95 -12.82 16 13 C 0.04 0.86 4.58 -6.50 -0.03 0.83 16 14 C 0.06 0.96 6.43 37.83 0.24 1.20 16 15 O -0.38 -6.58 10.13 -34.28 -0.35 -6.93 16 16 C 0.04 0.53 6.31 37.48 0.24 0.77 16 17 C 0.08 1.22 3.02 -27.47 -0.08 1.13 16 18 H 0.06 1.04 7.39 -51.93 -0.38 0.66 16 19 O -0.56 -8.33 13.20 -35.23 -0.47 -8.80 16 20 C 0.08 1.68 4.39 -4.48 -0.02 1.66 16 21 H 0.03 0.67 6.21 -51.93 -0.32 0.34 16 22 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 23 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.08 1.61 5.65 -51.93 -0.29 1.32 16 26 H 0.04 0.86 6.58 -51.93 -0.34 0.52 16 27 H 0.05 0.80 7.10 -51.93 -0.37 0.43 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.09 1.24 8.13 -51.93 -0.42 0.82 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.37 3.47 9.05 45.56 0.41 3.88 16 32 H 0.05 1.00 7.38 -51.93 -0.38 0.62 16 33 H 0.08 1.84 7.56 -51.93 -0.39 1.44 16 LS Contribution 256.05 15.07 3.86 3.86 Total: -1.00 -29.63 256.05 -6.09 -35.72 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -3.96 Total: 2.33 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 0.16 Total: -5.32 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: -0.32 Total: -37.35 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.81 Total: -15.73 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.63 -6.09 -35.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306968666.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.780 kcal (2) G-P(sol) polarization free energy of solvation -29.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds