Wall clock time and date at job start Mon Mar 30 2020 20:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47399 * 2 1 4 4 C 1.50706 * 109.46850 * 240.00312 * 2 1 3 5 5 H 1.08002 * 120.00152 * 239.99676 * 4 2 1 6 6 C 1.37883 * 119.99899 * 59.99989 * 4 2 1 7 7 N 1.31514 * 119.99808 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99984 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47152 * 90.00398 * 8 6 4 10 10 H 1.48505 * 109.47338 * 209.99997 * 8 6 4 11 11 H 1.48498 * 109.47478 * 330.00292 * 8 6 4 12 12 N 1.46899 * 109.47339 * 120.00653 * 2 1 3 13 13 C 1.40445 * 110.99807 * 58.95052 * 12 2 1 14 14 C 1.54276 * 111.67836 * 188.30222 * 13 12 2 15 15 O 1.40632 * 109.13576 * 282.77921 * 14 13 12 16 16 C 1.44083 * 116.72852 * 93.90456 * 15 14 13 17 17 C 1.53622 * 112.55133 * 318.11208 * 16 15 14 18 18 H 1.09003 * 108.97113 * 79.17767 * 17 16 15 19 19 O 1.42899 * 109.03148 * 198.06305 * 17 16 15 20 20 C 1.47630 * 111.00156 * 187.25707 * 12 2 1 21 21 H 1.08997 * 109.46914 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46723 * 299.99446 * 1 2 3 23 23 H 1.08999 * 109.47021 * 59.99558 * 1 2 3 24 24 H 0.97004 * 119.99463 * 180.02562 * 7 6 4 25 25 H 1.08996 * 109.03811 * 308.87093 * 13 12 2 26 26 H 1.08999 * 109.03740 * 67.74303 * 13 12 2 27 27 H 1.09002 * 109.52939 * 42.67919 * 14 13 12 28 28 H 1.09005 * 109.52859 * 162.88809 * 14 13 12 29 29 H 1.09001 * 108.86713 * 197.32133 * 16 15 14 30 30 H 1.08998 * 108.86781 * 78.90278 * 16 15 14 31 31 H 0.96705 * 114.00399 * 302.20782 * 19 17 16 32 32 H 1.09002 * 109.59070 * 273.28337 * 20 12 2 33 33 H 1.09002 * 109.58830 * 33.56707 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6533 -1.5885 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6033 8 14 2.3223 -1.1193 -4.0081 9 1 1.3445 -2.1612 -4.4126 10 1 2.4871 -0.1399 -5.1122 11 1 3.6306 -1.7564 -3.7123 12 7 2.0197 -0.6926 1.1993 13 6 1.5499 -2.0154 1.2437 14 6 1.8808 -2.6929 2.5897 15 8 3.2369 -3.0651 2.5973 16 6 4.1630 -2.1276 3.1799 17 6 3.8604 -0.6753 2.7809 18 1 3.0357 -0.3049 3.3898 19 8 5.0176 0.1263 3.0270 20 6 3.4851 -0.5634 1.3237 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 0.7088 1.1616 -3.4844 25 1 0.4691 -2.0138 1.1026 26 1 2.0118 -2.5840 0.4365 27 1 1.6898 -1.9955 3.4053 28 1 1.2590 -3.5795 2.7139 29 1 5.1720 -2.3799 2.8537 30 1 4.1141 -2.2123 4.2655 31 1 5.3217 0.1067 3.9447 32 1 3.9714 -1.3588 0.7589 33 1 3.8007 0.4053 0.9362 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306968666.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:20 Heat of formation + Delta-G solvation = -106.510787 kcal Electronic energy + Delta-G solvation = -15608.139398 eV Core-core repulsion = 13054.344583 eV Total energy + Delta-G solvation = -2553.794815 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.86669 -38.11005 -37.55825 -34.75849 -32.12019 -31.37063 -28.36400 -27.22090 -26.90909 -23.42474 -21.72934 -21.30930 -18.75630 -18.07113 -17.77755 -17.17640 -16.64610 -16.24248 -15.84938 -15.19270 -14.86721 -14.58486 -14.15460 -13.83187 -13.35108 -13.07475 -12.87108 -12.74097 -12.50752 -12.45416 -12.29142 -11.98990 -11.84378 -11.39751 -11.18205 -10.81265 -10.53491 -10.38346 -9.01111 -8.08967 -6.30876 1.34473 1.36153 1.45627 2.37170 2.79845 2.96054 3.11981 3.68379 3.78550 4.00853 4.20926 4.33511 4.42032 4.48387 4.60499 4.74928 4.80082 4.90857 5.02899 5.08527 5.12939 5.19586 5.24255 5.48871 5.67145 5.98951 6.13767 6.26769 6.38989 6.76591 6.88358 6.90572 7.40249 8.87619 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.034471 B = 0.009492 C = 0.009307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.085600 B = 2948.998297 C = 3007.884810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.215 3.785 3 H 0.005 0.995 4 C -0.552 4.552 5 H 0.043 0.957 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.948 3.052 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.278 1.278 12 N -0.543 5.543 13 C 0.041 3.959 14 C 0.070 3.930 15 O -0.402 6.402 16 C 0.037 3.963 17 C 0.088 3.912 18 H 0.072 0.928 19 O -0.574 6.574 20 C 0.083 3.917 21 H 0.036 0.964 22 H 0.034 0.966 23 H 0.061 0.939 24 H 0.264 0.736 25 H 0.081 0.919 26 H 0.004 0.996 27 H 0.070 0.930 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.398 0.602 32 H 0.020 0.980 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.184 -4.964 12.121 13.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.109 3.891 3 H 0.023 0.977 4 C -0.591 4.591 5 H 0.061 0.939 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.774 3.226 9 H -0.199 1.199 10 H -0.205 1.205 11 H -0.203 1.203 12 N -0.267 5.267 13 C -0.089 4.089 14 C -0.007 4.007 15 O -0.322 6.322 16 C -0.039 4.039 17 C 0.028 3.972 18 H 0.090 0.910 19 O -0.382 6.382 20 C -0.045 4.045 21 H 0.055 0.945 22 H 0.053 0.947 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.100 0.900 26 H 0.022 0.978 27 H 0.089 0.911 28 H 0.128 0.872 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.248 0.752 32 H 0.039 0.961 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.922 -4.677 11.682 12.918 hybrid contribution 0.573 -0.406 -1.337 1.510 sum 3.495 -5.082 10.345 12.044 Atomic orbital electron populations 1.21679 0.96695 0.99451 1.00091 1.19100 0.92953 0.92335 0.84741 0.97726 1.21875 1.31732 1.12614 0.92924 0.93923 1.25603 0.95096 0.95540 1.01542 1.69988 1.37195 1.23586 1.24156 0.85716 0.78641 0.78596 0.79649 1.19860 1.20488 1.20279 1.59544 1.09524 1.16426 1.41245 1.21652 1.00753 0.89038 0.97417 1.22700 0.82085 1.00197 0.95736 1.87472 1.17851 1.44025 1.82816 1.23751 0.93531 0.88061 0.98598 1.22104 0.88228 0.90721 0.96132 0.91035 1.86564 1.46580 1.69826 1.35221 1.21271 0.88448 0.99990 0.94804 0.94502 0.94721 0.92060 0.92715 0.90048 0.97757 0.91126 0.87169 0.88926 0.89626 0.75208 0.96118 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.85 8.68 71.98 0.62 -5.22 16 2 C 0.22 11.11 2.27 44.17 0.10 11.21 16 3 H 0.00 0.28 7.88 -2.39 -0.02 0.26 16 4 C -0.55 -30.96 7.38 25.60 0.19 -30.77 16 5 H 0.04 2.46 6.36 -2.91 -0.02 2.44 16 6 C 0.02 1.25 5.30 84.66 0.45 1.70 16 7 N -0.91 -52.52 11.32 21.45 0.24 -52.28 16 8 Si 0.95 44.67 29.54 68.60 2.03 46.70 16 9 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 N -0.54 -23.48 4.07 -890.95 -3.62 -27.10 16 13 C 0.04 1.63 4.58 87.90 0.40 2.03 16 14 C 0.07 2.07 6.43 72.41 0.47 2.54 16 15 O -0.40 -12.76 10.13 -145.59 -1.47 -14.23 16 16 C 0.04 0.96 6.31 72.19 0.46 1.41 16 17 C 0.09 2.68 3.02 30.12 0.09 2.77 16 18 H 0.07 2.11 7.39 -2.39 -0.02 2.09 16 19 O -0.57 -15.86 13.20 -148.98 -1.97 -17.83 16 20 C 0.08 3.46 4.39 85.48 0.37 3.84 16 21 H 0.04 1.68 6.21 -2.39 -0.01 1.66 16 22 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 24 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 25 H 0.08 3.16 5.65 -2.39 -0.01 3.15 16 26 H 0.00 0.20 6.58 -2.39 -0.02 0.18 16 27 H 0.07 1.87 7.10 -2.39 -0.02 1.85 16 28 H 0.11 2.69 8.14 -2.38 -0.02 2.67 16 29 H 0.09 2.33 8.13 -2.39 -0.02 2.31 16 30 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.40 6.10 9.05 -74.05 -0.67 5.43 16 32 H 0.02 0.94 7.38 -2.39 -0.02 0.93 16 33 H 0.05 2.47 7.56 -2.39 -0.02 2.45 16 Total: -1.00 -64.93 256.05 -1.21 -66.13 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 0.44 Total: 9.11 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 3.15 Total: -10.50 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -3.38 Total: -79.39 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -3.44 Total: -32.06 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -64.93 -1.21 -66.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306968666.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.376 kcal (2) G-P(sol) polarization free energy of solvation -64.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds