Wall clock time and date at job start Mon Mar 30 2020 20:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47507 * 2 1 4 4 C 1.50699 * 109.47231 * 120.00618 * 2 1 3 5 5 H 1.08001 * 120.00201 * 119.99812 * 4 2 1 6 6 C 1.37879 * 119.99841 * 299.99222 * 4 2 1 7 7 N 1.31513 * 119.99673 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00056 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47069 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46986 * 120.00435 * 8 6 4 11 11 H 1.48497 * 109.47347 * 240.00714 * 8 6 4 12 12 N 1.46905 * 109.47231 * 240.00459 * 2 1 3 13 13 C 1.47399 * 110.99568 * 306.04798 * 12 2 1 14 14 C 1.51044 * 111.55829 * 84.90117 * 13 12 2 15 15 O 1.43446 * 107.56118 * 94.02572 * 14 13 12 16 16 C 1.36609 * 117.84173 * 277.90339 * 15 14 13 17 17 C 1.54714 * 110.78564 * 61.03883 * 16 15 14 18 18 H 1.09000 * 109.54068 * 46.62426 * 17 16 15 19 19 O 1.42905 * 109.53782 * 166.78035 * 17 16 15 20 20 C 1.48028 * 110.99973 * 73.22388 * 12 2 1 21 21 H 1.08997 * 109.47434 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46868 * 299.99891 * 1 2 3 23 23 H 1.09000 * 109.47051 * 59.99688 * 1 2 3 24 24 H 0.97006 * 119.99971 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.06608 * 324.36342 * 13 12 2 26 26 H 1.09000 * 109.00350 * 205.39670 * 13 12 2 27 27 H 1.09001 * 109.83881 * 334.51170 * 14 13 12 28 28 H 1.08996 * 109.83977 * 213.54020 * 14 13 12 29 29 H 1.09001 * 109.21968 * 300.70218 * 16 15 14 30 30 H 1.09000 * 109.18287 * 181.35215 * 16 15 14 31 31 H 0.96696 * 114.00036 * 300.00061 * 19 17 16 32 32 H 1.09000 * 108.74893 * 71.42789 * 20 12 2 33 33 H 1.08992 * 108.75502 * 313.31424 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9430 0.8296 2.6034 8 14 2.3214 -1.1206 4.0078 9 1 3.1464 -2.2873 3.6036 10 1 3.1467 -0.1877 4.8164 11 1 1.1662 -1.5870 4.8159 12 7 2.0197 -0.6924 -1.1995 13 6 1.4322 -2.0399 -1.3083 14 6 0.0808 -2.0035 -1.9819 15 8 0.2869 -2.2522 -3.3795 16 6 0.6685 -1.2016 -4.1649 17 6 2.0265 -0.6289 -3.6941 18 1 2.7276 -1.4460 -3.5242 19 8 2.5481 0.2480 -4.6947 20 6 1.8204 0.1370 -2.4093 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.7084 1.1608 3.4844 25 1 1.3209 -2.4615 -0.3093 26 1 2.1025 -2.6735 -1.8892 27 1 -0.3750 -1.0230 -1.8438 28 1 -0.5637 -2.7747 -1.5600 29 1 -0.0887 -0.4195 -4.1109 30 1 0.7607 -1.5408 -5.1967 31 1 2.6995 -0.1771 -5.5499 32 1 2.5221 0.9707 -2.3820 33 1 0.8061 0.5355 -2.3978 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306968669.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:24 Heat of formation + Delta-G solvation = -98.693095 kcal Electronic energy + Delta-G solvation = -15685.433943 eV Core-core repulsion = 13131.978128 eV Total energy + Delta-G solvation = -2553.455814 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.34101 -38.05787 -37.64767 -34.74667 -32.14874 -31.11796 -28.53598 -27.67298 -26.72539 -23.08481 -22.61615 -20.70797 -18.83136 -18.28910 -17.69866 -17.34234 -16.87240 -16.15639 -15.96358 -15.15224 -14.86724 -14.41691 -14.19081 -13.77124 -13.49458 -13.04681 -12.98821 -12.71323 -12.67520 -12.35769 -12.30100 -12.10380 -11.70975 -11.42651 -11.24474 -10.97912 -10.46482 -10.33654 -8.85730 -8.12000 -6.23228 1.42288 1.44795 1.56373 2.41469 2.68533 2.97199 3.17534 3.60692 3.70410 3.86081 4.08303 4.22320 4.34380 4.46090 4.55734 4.65740 4.69598 4.79253 4.83983 4.91493 5.00917 5.10232 5.21412 5.45931 5.67372 5.77259 6.17175 6.41501 6.44491 6.67150 6.88003 6.90555 7.46198 8.94337 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.048653 B = 0.008609 C = 0.008285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.360478 B = 3251.724956 C = 3378.767274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.217 3.783 3 H -0.001 1.001 4 C -0.512 4.512 5 H 0.059 0.941 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.267 1.267 10 H -0.284 1.284 11 H -0.279 1.279 12 N -0.545 5.545 13 C 0.034 3.966 14 C 0.029 3.971 15 O -0.387 6.387 16 C 0.049 3.951 17 C 0.077 3.923 18 H 0.068 0.932 19 O -0.571 6.571 20 C 0.057 3.943 21 H 0.047 0.953 22 H 0.061 0.939 23 H 0.021 0.979 24 H 0.261 0.739 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.111 0.889 29 H 0.036 0.964 30 H 0.127 0.873 31 H 0.400 0.600 32 H 0.058 0.942 33 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.291 -5.258 -11.514 12.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.110 3.890 3 H 0.017 0.983 4 C -0.550 4.550 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.191 1.191 10 H -0.210 1.210 11 H -0.205 1.205 12 N -0.271 5.271 13 C -0.094 4.094 14 C -0.047 4.047 15 O -0.305 6.305 16 C -0.029 4.029 17 C 0.017 3.983 18 H 0.086 0.914 19 O -0.380 6.380 20 C -0.071 4.071 21 H 0.066 0.934 22 H 0.080 0.920 23 H 0.040 0.960 24 H 0.071 0.929 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.129 0.871 29 H 0.054 0.946 30 H 0.145 0.855 31 H 0.250 0.750 32 H 0.076 0.924 33 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.929 -4.949 -10.936 12.040 hybrid contribution -0.485 0.147 0.703 0.867 sum -1.414 -4.801 -10.234 11.392 Atomic orbital electron populations 1.22416 0.99839 0.99872 0.99618 1.19080 0.90403 0.92664 0.86844 0.98274 1.21351 1.30645 1.12509 0.90544 0.92302 1.25703 0.95363 0.95794 1.01868 1.70024 1.37829 1.24185 1.24030 0.85451 0.78079 0.78590 0.79165 1.19116 1.21022 1.20482 1.62123 1.60103 1.03003 1.01854 1.22458 0.94270 0.91003 1.01697 1.23615 0.98190 1.02781 0.80134 1.86387 1.87437 1.36520 1.20143 1.22645 0.93887 0.90308 0.96105 1.22366 0.96051 0.91982 0.87885 0.91443 1.86474 1.86450 1.40227 1.24827 1.21719 0.99236 0.96609 0.89514 0.93394 0.92014 0.96010 0.92934 0.90326 0.90454 0.92148 0.87129 0.94602 0.85522 0.74976 0.92397 0.95585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.47 7.26 71.98 0.52 -6.95 16 2 C 0.22 11.03 2.28 44.17 0.10 11.13 16 3 H 0.00 -0.04 8.04 -2.38 -0.02 -0.06 16 4 C -0.51 -27.86 7.63 25.60 0.20 -27.66 16 5 H 0.06 3.20 7.38 -2.91 -0.02 3.18 16 6 C 0.01 0.61 5.30 84.66 0.45 1.06 16 7 N -0.92 -52.53 11.32 21.45 0.24 -52.28 16 8 Si 0.96 43.29 29.54 68.60 2.03 45.32 16 9 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 N -0.55 -23.61 4.74 -878.79 -4.16 -27.78 16 13 C 0.03 1.26 4.62 85.57 0.40 1.66 16 14 C 0.03 0.95 5.06 71.34 0.36 1.31 16 15 O -0.39 -11.48 9.95 -100.61 -1.00 -12.48 16 16 C 0.05 1.26 6.07 72.57 0.44 1.70 16 17 C 0.08 2.29 3.24 30.52 0.10 2.38 16 18 H 0.07 2.07 7.24 -2.39 -0.02 2.05 16 19 O -0.57 -14.93 13.23 -148.98 -1.97 -16.90 16 20 C 0.06 2.19 4.63 85.43 0.40 2.58 16 21 H 0.05 2.09 5.65 -2.39 -0.01 2.08 16 22 H 0.06 3.28 6.07 -2.39 -0.01 3.26 16 23 H 0.02 0.93 5.79 -2.39 -0.01 0.91 16 24 H 0.26 14.17 8.31 -92.70 -0.77 13.40 16 25 H 0.08 3.21 6.40 -2.39 -0.02 3.20 16 26 H 0.08 2.71 7.24 -2.39 -0.02 2.69 16 27 H 0.06 2.14 3.86 -2.39 -0.01 2.13 16 28 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 29 H 0.04 0.97 7.72 -2.39 -0.02 0.95 16 30 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.40 5.78 9.09 -74.06 -0.67 5.11 16 32 H 0.06 2.41 7.99 -2.39 -0.02 2.40 16 33 H 0.03 1.02 5.00 -2.39 -0.01 1.01 16 Total: -1.00 -62.18 248.26 -1.46 -63.64 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.45 Total: 13.27 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 2.96 Total: -12.79 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -3.92 Total: -80.06 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -2.97 Total: -29.38 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -62.18 -1.46 -63.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306968669.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.054 kcal (2) G-P(sol) polarization free energy of solvation -62.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds