Wall clock time and date at job start Mon Mar 30 2020 20:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47390 * 2 1 4 4 C 1.50707 * 109.46810 * 240.00458 * 2 1 3 5 5 H 1.07997 * 119.99921 * 274.99503 * 4 2 1 6 6 C 1.37880 * 119.99968 * 94.99267 * 4 2 1 7 7 N 1.31506 * 120.00230 * 184.87808 * 6 4 2 8 8 Si 1.86799 * 119.99721 * 4.87891 * 6 4 2 9 9 H 1.48507 * 109.47251 * 84.76371 * 8 6 4 10 10 H 1.48502 * 109.47151 * 204.75863 * 8 6 4 11 11 H 1.48496 * 109.47526 * 324.76141 * 8 6 4 12 12 N 1.46905 * 109.47357 * 120.00794 * 2 1 3 13 13 C 1.47844 * 111.00109 * 179.15405 * 12 2 1 14 14 C 1.54902 * 104.79430 * 146.36228 * 13 12 2 15 15 H 1.08993 * 110.99336 * 81.02182 * 14 13 12 16 16 O 1.42904 * 110.98999 * 204.83929 * 14 13 12 17 17 C 1.55138 * 101.65575 * 322.92925 * 14 13 12 18 18 H 1.09005 * 110.70825 * 277.27280 * 17 14 13 19 19 C 1.52996 * 110.70783 * 154.03871 * 17 14 13 20 20 O 1.42899 * 109.47208 * 179.97438 * 19 17 14 21 21 C 1.47441 * 110.99618 * 299.99554 * 12 2 1 22 22 H 1.08997 * 109.47297 * 175.26907 * 1 2 3 23 23 H 1.09007 * 109.46835 * 295.26536 * 1 2 3 24 24 H 1.08997 * 109.47158 * 55.26035 * 1 2 3 25 25 H 0.96994 * 120.00655 * 180.02562 * 7 6 4 26 26 H 1.08994 * 110.37517 * 265.19111 * 13 12 2 27 27 H 1.09006 * 110.37191 * 27.53156 * 13 12 2 28 28 H 0.96699 * 114.00168 * 292.26761 * 16 14 13 29 29 H 1.09003 * 109.46989 * 299.94561 * 19 17 14 30 30 H 1.09000 * 109.47550 * 59.94901 * 19 17 14 31 31 H 0.96707 * 114.00078 * 180.02562 * 20 19 17 32 32 H 1.09000 * 109.88756 * 117.33492 * 21 12 2 33 33 H 1.09000 * 110.02574 * 356.22853 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.1354 -1.7854 -1.2292 6 6 2.3600 0.0122 -2.3582 7 7 2.7063 -0.6128 -3.4622 8 14 2.3121 1.8792 -2.3177 9 1 3.5966 2.3958 -1.7806 10 1 2.1061 2.3990 -3.6934 11 1 1.1957 2.3270 -1.4470 12 7 2.0197 -0.6927 1.1994 13 6 3.4975 -0.7301 1.2233 14 6 3.8712 -0.6373 2.7237 15 1 3.7849 -1.6097 3.2085 16 8 5.1840 -0.0985 2.8919 17 6 2.7949 0.3457 3.2547 18 1 3.0899 1.3782 3.0673 19 6 2.5411 0.1163 4.7459 20 8 1.5478 1.0343 5.2068 21 6 1.5470 -0.0242 2.4255 22 1 -0.3634 -1.0241 -0.0848 23 1 -0.3633 0.4387 0.9294 24 1 -0.3633 0.5856 -0.8445 25 1 2.9372 -0.1046 -4.2553 26 1 3.8603 -1.6662 0.7991 27 1 3.9075 0.1194 0.6769 28 1 5.8905 -0.6776 2.5745 29 1 2.1924 -0.9045 4.9022 30 1 3.4664 0.2731 5.3003 31 1 1.3363 0.9461 6.1464 32 1 0.9107 -0.7013 2.9953 33 1 0.9917 0.8779 2.1685 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307150638.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:42 Heat of formation + Delta-G solvation = -95.112468 kcal Electronic energy + Delta-G solvation = -15286.559927 eV Core-core repulsion = 12733.259380 eV Total energy + Delta-G solvation = -2553.300547 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.18072 -36.57050 -35.90711 -33.23036 -31.51803 -29.47419 -27.37918 -25.38595 -24.19823 -21.49308 -20.24200 -19.08056 -17.49961 -17.15543 -16.85170 -15.35387 -15.18052 -14.45902 -13.85560 -13.68402 -13.21556 -13.03109 -12.48812 -12.36923 -12.07050 -11.90989 -11.30884 -11.05740 -10.97298 -10.70714 -10.58399 -10.21865 -10.13035 -9.87141 -9.74430 -9.58641 -9.11090 -8.58387 -7.33272 -6.09780 -4.08626 3.26101 3.34801 3.37443 4.05791 4.38776 4.39471 4.87984 5.02061 5.12453 5.15153 5.31165 5.47175 5.54946 5.67369 5.87971 6.03217 6.29088 6.34376 6.45081 6.51979 6.58197 6.65014 6.78614 6.90864 7.26132 7.59006 7.62275 7.79196 7.97605 8.02986 8.64278 9.00747 9.54293 11.03273 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.034818 B = 0.009584 C = 0.008777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.979876 B = 2920.893439 C = 3189.571635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.174 3.826 3 H 0.002 0.998 4 C -0.502 4.502 5 H 0.080 0.920 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.870 3.130 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.266 1.266 12 N -0.517 5.517 13 C 0.038 3.962 14 C 0.093 3.907 15 H 0.069 0.931 16 O -0.566 6.566 17 C -0.104 4.104 18 H 0.085 0.915 19 C 0.091 3.909 20 O -0.571 6.571 21 C 0.050 3.950 22 H 0.054 0.946 23 H 0.025 0.975 24 H 0.045 0.955 25 H 0.264 0.736 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.379 0.621 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.375 0.625 32 H 0.069 0.931 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.110 0.950 14.563 14.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.067 3.933 3 H 0.020 0.980 4 C -0.540 4.540 5 H 0.098 0.902 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.697 3.303 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.191 1.191 12 N -0.243 5.243 13 C -0.090 4.090 14 C 0.034 3.966 15 H 0.087 0.913 16 O -0.371 6.371 17 C -0.123 4.123 18 H 0.104 0.896 19 C 0.013 3.987 20 O -0.376 6.376 21 C -0.078 4.078 22 H 0.073 0.927 23 H 0.044 0.956 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.226 0.774 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.221 0.779 32 H 0.087 0.913 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.644 1.161 13.947 14.010 hybrid contribution 0.640 1.199 0.165 1.369 sum 1.283 2.360 14.111 14.365 Atomic orbital electron populations 1.21975 0.97737 1.01109 0.98379 1.19945 0.92407 0.92024 0.88920 0.98025 1.20901 1.43123 0.95865 0.94129 0.90169 1.24993 0.94646 0.97905 0.95414 1.69882 1.46335 1.35651 1.01652 0.86976 0.79102 0.86964 0.77220 1.20272 1.21344 1.19087 1.63752 1.07162 1.51561 1.01794 1.23327 0.89783 1.02494 0.93407 1.23039 0.81934 0.95270 0.96404 0.91292 1.86449 1.15711 1.49017 1.85891 1.22347 0.95731 1.00693 0.93530 0.89643 1.22141 0.90367 0.91847 0.94393 1.86521 1.60769 1.60505 1.29831 1.22823 0.95243 0.97993 0.91735 0.92656 0.95593 0.93558 0.92610 0.90151 0.92789 0.77370 0.93435 0.93595 0.77883 0.91258 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.12 37.16 0.34 -2.63 16 2 C 0.17 4.21 1.31 -68.86 -0.09 4.12 16 3 H 0.00 0.05 5.26 -51.93 -0.27 -0.22 16 4 C -0.50 -14.05 8.20 -34.44 -0.28 -14.33 16 5 H 0.08 2.47 8.06 -52.49 -0.42 2.04 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 7 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 8 Si 0.87 21.84 26.99 -169.99 -4.59 17.25 16 9 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 11 H -0.27 -6.49 6.82 56.52 0.39 -6.10 16 12 N -0.52 -11.02 5.02 -224.68 -1.13 -12.14 16 13 C 0.04 0.76 5.58 -2.30 -0.01 0.74 16 14 C 0.09 1.47 3.87 -24.60 -0.10 1.37 16 15 H 0.07 0.97 8.05 -51.93 -0.42 0.55 16 16 O -0.57 -8.37 13.47 -35.23 -0.47 -8.85 16 17 C -0.10 -1.69 2.97 -88.80 -0.26 -1.96 16 18 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 19 C 0.09 1.18 6.36 37.16 0.24 1.41 16 20 O -0.57 -7.36 13.50 -35.23 -0.48 -7.84 16 21 C 0.05 0.92 5.52 -2.84 -0.02 0.91 16 22 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 23 H 0.03 0.50 6.38 -51.92 -0.33 0.17 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 27 H 0.05 1.19 7.77 -51.93 -0.40 0.79 16 28 H 0.38 3.95 9.12 45.56 0.42 4.37 16 29 H 0.05 0.55 8.06 -51.93 -0.42 0.13 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.38 2.82 9.12 45.56 0.42 3.23 16 32 H 0.07 1.19 7.77 -51.93 -0.40 0.78 16 33 H 0.06 1.09 6.38 -51.93 -0.33 0.76 16 LS Contribution 267.32 15.07 4.03 4.03 Total: -1.00 -32.48 267.32 -5.58 -38.06 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -3.43 Total: 4.33 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -0.28 Total: -8.38 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: -0.35 Total: -38.61 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.95 Total: -16.68 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.59 Total: 17.25 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.48 -5.58 -38.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307150638.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.050 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds