Wall clock time and date at job start Mon Mar 30 2020 20:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81401 * 103.00206 * 2 1 4 4 H 1.09007 * 110.76664 * 51.79595 * 3 2 1 5 5 C 1.55146 * 110.70351 * 288.59982 * 3 2 1 6 6 C 1.54909 * 101.64949 * 205.96362 * 5 3 2 7 7 N 1.47845 * 104.79758 * 37.06967 * 6 5 3 8 8 C 1.46902 * 110.99881 * 213.63589 * 7 6 5 9 9 H 1.09005 * 109.47362 * 60.89900 * 8 7 6 10 10 C 1.53000 * 109.46985 * 300.90194 * 8 7 6 11 11 C 1.50700 * 109.47260 * 180.89996 * 8 7 6 12 12 H 1.08002 * 119.99783 * 0.02562 * 11 8 7 13 13 C 1.37870 * 120.00251 * 179.97438 * 11 8 7 14 14 N 1.31518 * 119.99931 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 120.00098 * 180.02562 * 13 11 8 16 16 H 1.48498 * 109.47083 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47366 * 120.00104 * 15 13 11 18 18 H 1.48505 * 109.47100 * 240.00373 * 15 13 11 19 19 C 1.47440 * 108.56760 * 335.90095 * 7 6 5 20 20 H 1.08999 * 109.47156 * 300.00072 * 1 2 3 21 21 H 1.09006 * 109.47289 * 59.99583 * 1 2 3 22 22 H 1.08995 * 109.47289 * 180.02562 * 1 2 3 23 23 H 1.08993 * 110.99007 * 324.05254 * 5 3 2 24 24 H 1.08996 * 110.99158 * 87.83548 * 5 3 2 25 25 H 1.09007 * 110.36945 * 278.23824 * 6 5 3 26 26 H 1.09002 * 110.37356 * 155.90392 * 6 5 3 27 27 H 1.09001 * 109.47416 * 54.45189 * 10 8 7 28 28 H 1.09004 * 109.47124 * 174.44864 * 10 8 7 29 29 H 1.09002 * 109.47137 * 294.44781 * 10 8 7 30 30 H 0.97004 * 119.99779 * 180.02562 * 14 13 11 31 31 H 1.08998 * 109.88837 * 120.39363 * 19 7 6 32 32 H 1.08995 * 109.89107 * 241.58641 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6948 2.2859 0.8009 5 6 1.8945 2.4061 -1.3755 6 6 2.8787 3.6018 -1.4076 7 7 4.1085 3.0961 -0.7614 8 6 4.7864 4.1626 -0.0123 9 1 4.1243 4.5349 0.7695 10 6 5.1448 5.3057 -0.9640 11 6 6.0441 3.6162 0.6127 12 1 6.3132 2.5803 0.4677 13 6 6.8518 4.4388 1.3689 14 7 6.5243 5.7004 1.5451 15 14 8.4111 3.7617 2.1430 16 1 8.5517 2.3245 1.7970 17 1 9.5850 4.5122 1.6294 18 1 8.3358 3.9100 3.6187 19 6 3.7460 1.9757 0.1258 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 2.0998 1.7094 -2.1882 24 1 0.8606 2.7496 -1.4102 25 1 2.4727 4.4427 -0.8452 26 1 3.0844 3.8965 -2.4367 27 1 4.2487 5.6354 -1.4897 28 1 5.5580 6.1375 -0.3935 29 1 5.8831 4.9586 -1.6869 30 1 7.0928 6.2792 2.0768 31 1 4.2705 1.0721 -0.1847 32 1 4.0029 2.2206 1.1564 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307589958.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:45 Heat of formation + Delta-G solvation = -0.190805 kcal Electronic energy + Delta-G solvation = -12902.651155 eV Core-core repulsion = 10796.219591 eV Total energy + Delta-G solvation = -2106.431564 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.30924 -33.80578 -31.24996 -29.03626 -28.54432 -27.49014 -25.02199 -21.68006 -20.76924 -19.35635 -16.48090 -16.01525 -15.52555 -14.91111 -14.29201 -13.66916 -13.49264 -13.14491 -12.97340 -12.30596 -12.21348 -11.94342 -11.70516 -11.05027 -10.87917 -10.79089 -10.61627 -10.53518 -10.19982 -10.00789 -9.79574 -9.64936 -8.90269 -8.44799 -7.52434 -7.22432 -6.01696 -4.05587 1.84092 2.72600 3.30718 3.38606 3.44208 4.41864 4.84034 4.87064 5.12097 5.13288 5.25490 5.34025 5.40245 5.65893 5.74428 5.84124 6.01653 6.30787 6.45393 6.54624 6.62992 6.82465 7.04051 7.04099 7.48414 7.65281 7.84845 8.13581 8.30315 8.55244 9.01437 9.59770 11.05587 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.040787 B = 0.008117 C = 0.007089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.332207 B = 3448.859785 C = 3948.621136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.254 6.254 3 C -0.076 4.076 4 H 0.085 0.915 5 C -0.121 4.121 6 C 0.047 3.953 7 N -0.520 5.520 8 C 0.206 3.794 9 H -0.001 1.001 10 C -0.130 4.130 11 C -0.503 4.503 12 H 0.063 0.937 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.081 3.919 20 H 0.072 0.928 21 H 0.073 0.927 22 H 0.096 0.904 23 H 0.083 0.917 24 H 0.063 0.937 25 H 0.039 0.961 26 H 0.073 0.927 27 H 0.008 0.992 28 H 0.081 0.919 29 H 0.036 0.964 30 H 0.260 0.740 31 H 0.071 0.929 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.464 -6.254 -3.247 12.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.027 6.027 3 C -0.206 4.206 4 H 0.104 0.896 5 C -0.161 4.161 6 C -0.083 4.083 7 N -0.245 5.245 8 C 0.100 3.900 9 H 0.017 0.983 10 C -0.188 4.188 11 C -0.542 4.542 12 H 0.081 0.919 13 C -0.142 4.142 14 N -0.534 5.534 15 Si 0.724 3.276 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.048 4.048 20 H 0.091 0.909 21 H 0.092 0.908 22 H 0.114 0.886 23 H 0.101 0.899 24 H 0.082 0.918 25 H 0.057 0.943 26 H 0.091 0.909 27 H 0.027 0.973 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.364 -7.150 -3.503 12.292 hybrid contribution -0.594 1.114 1.128 1.693 sum -9.959 -6.037 -2.375 11.885 Atomic orbital electron populations 1.23335 0.95477 1.05861 1.04601 1.86824 1.06000 1.11982 1.97851 1.24617 1.02893 0.92491 1.00616 0.89640 1.23074 0.98876 0.98350 0.95805 1.22951 0.90076 0.95190 1.00072 1.63773 1.19972 1.09924 1.30871 1.19493 0.93357 0.87170 0.90014 0.98319 1.21797 0.97745 1.00613 0.98642 1.21173 1.06402 0.96903 1.29708 0.91874 1.24931 0.98078 0.94854 0.96366 1.69918 1.38311 1.04935 1.40195 0.86465 0.83104 0.79262 0.78776 1.19643 1.21008 1.21142 1.22443 0.88024 0.95970 0.98378 0.90886 0.90758 0.88566 0.89858 0.91797 0.94260 0.90906 0.97332 0.89993 0.94515 0.93055 0.91044 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 10.74 101.05 1.09 -0.22 16 2 S -0.25 -3.73 21.63 -107.50 -2.33 -6.06 16 3 C -0.08 -1.24 3.44 -24.91 -0.09 -1.33 16 4 H 0.09 1.37 8.14 -51.92 -0.42 0.94 16 5 C -0.12 -1.82 6.52 -24.59 -0.16 -1.98 16 6 C 0.05 0.84 5.32 -2.30 -0.01 0.83 16 7 N -0.52 -11.35 5.02 -224.67 -1.13 -12.48 16 8 C 0.21 5.22 1.65 -68.86 -0.11 5.11 16 9 H 0.00 -0.02 8.11 -51.93 -0.42 -0.44 16 10 C -0.13 -3.19 8.87 37.16 0.33 -2.86 16 11 C -0.50 -13.90 7.69 -34.44 -0.26 -14.17 16 12 H 0.06 1.76 7.44 -52.49 -0.39 1.37 16 13 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 14 N -0.89 -25.57 11.38 55.43 0.63 -24.94 16 15 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 19 C 0.08 1.63 5.67 -2.84 -0.02 1.61 16 20 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 21 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 22 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.08 1.24 8.04 -51.93 -0.42 0.82 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.73 7.61 -51.93 -0.40 0.33 16 26 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 27 H 0.01 0.17 6.83 -51.93 -0.35 -0.18 16 28 H 0.08 2.19 6.24 -51.93 -0.32 1.86 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.07 1.47 7.78 -51.93 -0.40 1.06 16 32 H 0.07 1.61 7.05 -51.93 -0.37 1.24 16 LS Contribution 268.45 15.07 4.05 4.05 Total: -1.00 -28.47 268.45 -8.29 -36.76 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -5.16 Total: -2.37 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 0.67 Total: -11.46 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.50 Total: -37.42 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -2.33 Total: -6.06 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.47 -8.29 -36.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307589958.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.569 kcal (2) G-P(sol) polarization free energy of solvation -28.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds