Wall clock time and date at job start Mon Mar 30 2020 20:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47321 * 2 1 4 4 F 1.39902 * 109.47280 * 120.00073 * 2 1 3 5 5 C 1.52998 * 109.47021 * 239.99802 * 2 1 3 6 6 C 1.53000 * 109.47084 * 174.99989 * 5 2 1 7 7 N 1.46904 * 109.47095 * 180.02562 * 6 5 2 8 8 C 1.46894 * 111.00197 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47457 * 174.70090 * 8 7 6 10 10 C 1.50698 * 115.54804 * 65.16285 * 9 8 7 11 11 H 1.08000 * 120.00359 * 264.96242 * 10 9 8 12 12 C 1.37881 * 120.00022 * 84.97062 * 10 9 8 13 13 N 1.31518 * 119.99813 * 353.05984 * 12 10 9 14 14 Si 1.86795 * 120.00153 * 173.06132 * 12 10 9 15 15 H 1.48503 * 109.47155 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47194 * 119.99953 * 14 12 10 17 17 H 1.48497 * 109.47289 * 239.99908 * 14 12 10 18 18 C 1.53000 * 117.49466 * 279.49721 * 9 8 7 19 19 C 1.52998 * 117.49668 * 210.83754 * 9 8 7 20 20 H 1.08998 * 109.47321 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46759 * 300.00472 * 1 2 3 22 22 H 1.09000 * 109.47115 * 60.00166 * 1 2 3 23 23 H 1.09003 * 109.47293 * 295.00470 * 5 2 1 24 24 H 1.08999 * 109.46864 * 55.00111 * 5 2 1 25 25 H 1.08997 * 109.47077 * 300.00162 * 6 5 2 26 26 H 1.08999 * 109.47170 * 60.00309 * 6 5 2 27 27 H 1.00897 * 111.00326 * 56.04340 * 7 6 5 28 28 H 1.09007 * 109.46829 * 294.69936 * 8 7 6 29 29 H 1.08996 * 109.47359 * 54.69520 * 8 7 6 30 30 H 0.96997 * 119.99855 * 185.03348 * 13 12 10 31 31 H 1.08995 * 117.49998 * 359.97438 * 18 9 8 32 32 H 1.09003 * 117.49747 * 145.02208 * 18 9 8 33 33 H 1.09002 * 117.49359 * 214.98049 * 19 9 8 34 34 H 1.08996 * 117.50111 * 359.97016 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9964 -0.6595 1.1423 5 6 2.0400 -0.7213 -1.2492 6 6 3.5648 -0.6133 -1.3137 7 7 4.0545 -1.3054 -2.5134 8 6 5.5180 -1.2229 -2.6084 9 6 6.0005 -2.0630 -3.7926 10 6 5.5622 -1.5822 -5.1519 11 1 4.6789 -1.9986 -5.6131 12 6 6.2892 -0.6108 -5.8070 13 7 7.2827 -0.0067 -5.1926 14 14 5.8627 -0.1529 -7.5671 15 1 4.7133 -0.9728 -8.0273 16 1 5.5019 1.2861 -7.6306 17 1 7.0345 -0.4085 -8.4428 18 6 6.1237 -3.5736 -3.5833 19 6 7.3830 -2.7091 -3.6835 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.7516 -1.7716 -1.2056 24 1 1.6054 -0.2618 -2.1369 25 1 3.8532 0.4369 -1.3573 26 1 3.9995 -1.0729 -0.4260 27 1 3.6166 -0.9399 -3.3457 28 1 5.8146 -0.1842 -2.7550 29 1 5.9637 -1.6016 -1.6887 30 1 7.7470 0.7264 -5.6261 31 1 5.8614 -3.9688 -2.6020 32 1 5.8882 -4.2197 -4.4291 33 1 7.9755 -2.7868 -4.5952 34 1 7.9490 -2.5354 -2.7684 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702595745.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:22 Heat of formation + Delta-G solvation = -46.896885 kcal Electronic energy + Delta-G solvation = -14445.222227 eV Core-core repulsion = 11906.385254 eV Total energy + Delta-G solvation = -2538.836973 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.53438 -37.05188 -35.31566 -32.78913 -31.88993 -28.78065 -25.63486 -24.35679 -21.99901 -21.09337 -20.85477 -18.98670 -16.66318 -15.96052 -15.25803 -15.07134 -14.85517 -14.57678 -13.85251 -13.45065 -13.09485 -12.78685 -12.43719 -12.31143 -12.05739 -11.47349 -11.19420 -10.98602 -10.92078 -10.72158 -10.60832 -10.57549 -10.38616 -10.08286 -9.37497 -8.71953 -8.41213 -8.03695 -7.47151 -6.01664 -4.07650 3.26549 3.35909 3.39842 4.39795 4.44678 4.69776 4.80996 4.91796 5.21434 5.27187 5.37923 5.55584 5.59509 5.70773 5.88661 5.92057 5.99370 6.20612 6.35547 6.38746 6.52647 6.62606 6.87996 6.89011 6.95624 7.20753 7.55909 7.59135 7.89273 8.01825 8.31163 8.52317 8.96132 9.57845 11.06411 Molecular weight = 215.14amu Principal moments of inertia in cm(-1) A = 0.032898 B = 0.006746 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.921732 B = 4149.502952 C = 4650.195287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.088 3.912 3 H 0.080 0.920 4 F -0.216 7.216 5 C -0.143 4.143 6 C 0.057 3.943 7 N -0.681 5.681 8 C 0.106 3.894 9 C 0.049 3.951 10 C -0.492 4.492 11 H 0.061 0.939 12 C 0.069 3.931 13 N -0.881 5.881 14 Si 0.887 3.113 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.284 1.284 18 C -0.200 4.200 19 C -0.163 4.163 20 H 0.067 0.933 21 H 0.063 0.937 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.021 0.979 26 H 0.067 0.933 27 H 0.346 0.654 28 H 0.035 0.965 29 H 0.037 0.963 30 H 0.258 0.742 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.548 1.267 7.373 12.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.051 3.949 3 H 0.098 0.902 4 F -0.197 7.197 5 C -0.181 4.181 6 C -0.073 4.073 7 N -0.313 5.313 8 C -0.023 4.023 9 C 0.048 3.952 10 C -0.530 4.530 11 H 0.079 0.921 12 C -0.134 4.134 13 N -0.518 5.518 14 Si 0.715 3.285 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.210 1.210 18 C -0.238 4.238 19 C -0.201 4.201 20 H 0.086 0.914 21 H 0.082 0.918 22 H 0.093 0.907 23 H 0.100 0.900 24 H 0.096 0.904 25 H 0.039 0.961 26 H 0.085 0.915 27 H 0.164 0.836 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.335 0.735 7.645 12.088 hybrid contribution 0.098 1.289 -1.162 1.738 sum -9.237 2.024 6.483 11.465 Atomic orbital electron populations 1.22368 0.94618 1.03505 1.03095 1.21580 0.94447 0.96268 0.82588 0.90239 1.92803 1.90323 1.83456 1.53147 1.22186 0.97069 1.02274 0.96611 1.21890 0.93460 0.96225 0.95732 1.60415 1.07713 1.58823 1.04302 1.21423 0.85498 0.99005 0.96330 1.18751 0.94635 0.88087 0.93733 1.20514 1.10672 1.21889 0.99904 0.92129 1.25019 0.94544 0.96308 0.97520 1.70008 1.22061 1.22144 1.37568 0.86618 0.78387 0.78040 0.85456 1.19664 1.21203 1.21008 1.22873 1.04584 0.96787 0.99526 1.22534 0.91514 1.06049 0.99978 0.91407 0.91794 0.90727 0.90011 0.90354 0.96114 0.91494 0.83571 0.94689 0.94472 0.93176 0.91664 0.90900 0.90347 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 9.65 37.16 0.36 -1.27 16 2 C 0.09 1.02 3.96 -26.73 -0.11 0.91 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 4 F -0.22 -3.08 16.76 2.25 0.04 -3.04 16 5 C -0.14 -1.90 5.24 -26.73 -0.14 -2.04 16 6 C 0.06 0.94 5.59 -3.82 -0.02 0.92 16 7 N -0.68 -13.59 6.47 -113.78 -0.74 -14.33 16 8 C 0.11 2.43 5.54 -3.83 -0.02 2.41 16 9 C 0.05 1.21 1.56 -155.66 -0.24 0.97 16 10 C -0.49 -13.23 8.33 -34.44 -0.29 -13.51 16 11 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 12 C 0.07 1.87 5.39 -17.82 -0.10 1.77 16 13 N -0.88 -24.87 12.95 55.43 0.72 -24.15 16 14 Si 0.89 20.88 29.55 -169.99 -5.02 15.85 16 15 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C -0.20 -4.59 9.96 -26.69 -0.27 -4.85 16 19 C -0.16 -3.95 9.46 -26.69 -0.25 -4.20 16 20 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 1.15 7.94 -51.93 -0.41 0.73 16 27 H 0.35 7.06 8.30 -39.29 -0.33 6.73 16 28 H 0.03 0.88 8.14 -51.92 -0.42 0.46 16 29 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 30 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 31 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 33 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 34 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 289.88 15.07 4.37 4.37 Total: -1.00 -28.24 289.88 -7.48 -35.73 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -5.78 Total: 4.46 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: -1.07 Total: -18.88 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: -0.02 Total: -38.48 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.04 Total: -3.04 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.24 -7.48 -35.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702595745.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.171 kcal (2) G-P(sol) polarization free energy of solvation -28.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds