Wall clock time and date at job start Mon Mar 30 2020 20:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47321 * 2 1 4 4 F 1.39902 * 109.47280 * 120.00073 * 2 1 3 5 5 C 1.52998 * 109.47021 * 239.99802 * 2 1 3 6 6 C 1.53000 * 109.47084 * 174.99989 * 5 2 1 7 7 N 1.46904 * 109.47095 * 180.02562 * 6 5 2 8 8 C 1.46894 * 111.00197 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47457 * 174.70090 * 8 7 6 10 10 C 1.50698 * 115.54804 * 65.16285 * 9 8 7 11 11 H 1.08000 * 120.00359 * 264.96242 * 10 9 8 12 12 C 1.37881 * 120.00022 * 84.97062 * 10 9 8 13 13 N 1.31518 * 119.99813 * 353.05984 * 12 10 9 14 14 Si 1.86795 * 120.00153 * 173.06132 * 12 10 9 15 15 H 1.48503 * 109.47155 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47194 * 119.99953 * 14 12 10 17 17 H 1.48497 * 109.47289 * 239.99908 * 14 12 10 18 18 C 1.53000 * 117.49466 * 279.49721 * 9 8 7 19 19 C 1.52998 * 117.49668 * 210.83754 * 9 8 7 20 20 H 1.08998 * 109.47321 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46759 * 300.00472 * 1 2 3 22 22 H 1.09000 * 109.47115 * 60.00166 * 1 2 3 23 23 H 1.09003 * 109.47293 * 295.00470 * 5 2 1 24 24 H 1.08999 * 109.46864 * 55.00111 * 5 2 1 25 25 H 1.08997 * 109.47077 * 300.00162 * 6 5 2 26 26 H 1.08999 * 109.47170 * 60.00309 * 6 5 2 27 27 H 1.00897 * 111.00326 * 56.04340 * 7 6 5 28 28 H 1.09007 * 109.46829 * 294.69936 * 8 7 6 29 29 H 1.08996 * 109.47359 * 54.69520 * 8 7 6 30 30 H 0.96997 * 119.99855 * 185.03348 * 13 12 10 31 31 H 1.08995 * 117.49998 * 359.97438 * 18 9 8 32 32 H 1.09003 * 117.49747 * 145.02208 * 18 9 8 33 33 H 1.09002 * 117.49359 * 214.98049 * 19 9 8 34 34 H 1.08996 * 117.50111 * 359.97016 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9964 -0.6595 1.1423 5 6 2.0400 -0.7213 -1.2492 6 6 3.5648 -0.6133 -1.3137 7 7 4.0545 -1.3054 -2.5134 8 6 5.5180 -1.2229 -2.6084 9 6 6.0005 -2.0630 -3.7926 10 6 5.5622 -1.5822 -5.1519 11 1 4.6789 -1.9986 -5.6131 12 6 6.2892 -0.6108 -5.8070 13 7 7.2827 -0.0067 -5.1926 14 14 5.8627 -0.1529 -7.5671 15 1 4.7133 -0.9728 -8.0273 16 1 5.5019 1.2861 -7.6306 17 1 7.0345 -0.4085 -8.4428 18 6 6.1237 -3.5736 -3.5833 19 6 7.3830 -2.7091 -3.6835 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.7516 -1.7716 -1.2056 24 1 1.6054 -0.2618 -2.1369 25 1 3.8532 0.4369 -1.3573 26 1 3.9995 -1.0729 -0.4260 27 1 3.6166 -0.9399 -3.3457 28 1 5.8146 -0.1842 -2.7550 29 1 5.9637 -1.6016 -1.6887 30 1 7.7470 0.7264 -5.6261 31 1 5.8614 -3.9688 -2.6020 32 1 5.8882 -4.2197 -4.4291 33 1 7.9755 -2.7868 -4.5952 34 1 7.9490 -2.5354 -2.7684 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702595745.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:22 Heat of formation + Delta-G solvation = -63.238361 kcal Electronic energy + Delta-G solvation = -14445.930847 eV Core-core repulsion = 11906.385254 eV Total energy + Delta-G solvation = -2539.545592 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.55532 -38.84910 -36.75877 -34.08332 -33.85805 -29.98155 -27.62090 -25.94032 -23.33459 -22.76493 -22.13812 -20.91216 -17.94115 -17.67792 -16.63089 -16.46240 -16.36217 -16.00673 -15.62980 -14.96277 -14.60389 -14.15362 -13.71851 -13.42695 -13.30041 -13.02963 -12.93549 -12.87030 -12.59943 -12.27700 -12.05862 -11.98888 -11.70049 -11.56866 -11.23637 -10.71743 -10.41075 -9.94152 -9.14054 -8.08300 -6.19878 1.40135 1.44532 1.54708 2.43501 3.18433 3.19853 3.64196 3.82674 3.84850 3.99472 4.08252 4.32130 4.41847 4.49441 4.63374 4.67212 4.72564 4.84171 4.92267 5.00682 5.02837 5.05856 5.19459 5.24311 5.27866 5.33865 5.65758 5.67633 5.80473 6.33035 6.48148 6.66097 6.89755 7.48444 8.99598 Molecular weight = 215.14amu Principal moments of inertia in cm(-1) A = 0.032898 B = 0.006746 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.921732 B = 4149.502952 C = 4650.195287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.084 3.916 3 H 0.092 0.908 4 F -0.233 7.233 5 C -0.135 4.135 6 C 0.057 3.943 7 N -0.681 5.681 8 C 0.120 3.880 9 C 0.024 3.976 10 C -0.501 4.501 11 H 0.055 0.945 12 C 0.024 3.976 13 N -0.911 5.911 14 Si 0.950 3.050 15 H -0.266 1.266 16 H -0.281 1.281 17 H -0.286 1.286 18 C -0.179 4.179 19 C -0.169 4.169 20 H 0.066 0.934 21 H 0.073 0.927 22 H 0.090 0.910 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.021 0.979 26 H 0.059 0.941 27 H 0.343 0.657 28 H 0.005 0.995 29 H 0.042 0.958 30 H 0.259 0.741 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.020 1.362 7.366 13.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.048 3.952 3 H 0.110 0.890 4 F -0.214 7.214 5 C -0.173 4.173 6 C -0.073 4.073 7 N -0.311 5.311 8 C -0.010 4.010 9 C 0.023 3.977 10 C -0.539 4.539 11 H 0.073 0.927 12 C -0.176 4.176 13 N -0.549 5.549 14 Si 0.776 3.224 15 H -0.190 1.190 16 H -0.207 1.207 17 H -0.212 1.212 18 C -0.216 4.216 19 C -0.207 4.207 20 H 0.085 0.915 21 H 0.092 0.908 22 H 0.109 0.891 23 H 0.095 0.905 24 H 0.111 0.889 25 H 0.039 0.961 26 H 0.078 0.922 27 H 0.161 0.839 28 H 0.023 0.977 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.825 0.820 7.647 13.279 hybrid contribution 0.562 1.239 -1.128 1.768 sum -10.263 2.059 6.519 12.331 Atomic orbital electron populations 1.22339 0.92366 1.03900 1.04455 1.21756 0.96218 0.96278 0.80972 0.89041 1.92774 1.90714 1.83865 1.54048 1.22119 0.94410 1.02474 0.98281 1.21959 0.95815 0.95702 0.93800 1.60396 1.05861 1.59559 1.05317 1.21155 0.87389 0.96769 0.95638 1.18933 0.95164 0.89703 0.93877 1.20720 1.10464 1.21868 1.00892 0.92703 1.25693 0.94524 0.96365 1.01015 1.70117 1.23065 1.22665 1.39042 0.85636 0.78060 0.77874 0.80846 1.19000 1.20681 1.21201 1.22849 1.02683 0.95558 1.00496 1.22460 0.91637 1.07140 0.99455 0.91516 0.90754 0.89100 0.90548 0.88945 0.96081 0.92207 0.83923 0.97687 0.93988 0.93240 0.89820 0.90767 0.92431 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 9.65 71.98 0.69 -2.00 16 2 C 0.08 1.78 3.96 30.60 0.12 1.90 16 3 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 4 F -0.23 -6.30 16.76 44.97 0.75 -5.55 16 5 C -0.13 -3.33 5.24 30.59 0.16 -3.17 16 6 C 0.06 1.82 5.59 86.30 0.48 2.30 16 7 N -0.68 -26.67 6.47 -513.89 -3.32 -30.00 16 8 C 0.12 5.49 5.54 86.30 0.48 5.97 16 9 C 0.02 1.19 1.56 -52.93 -0.08 1.10 16 10 C -0.50 -26.90 8.33 25.60 0.21 -26.68 16 11 H 0.05 2.94 7.82 -2.91 -0.02 2.92 16 12 C 0.02 1.29 5.39 84.66 0.46 1.75 16 13 N -0.91 -51.85 12.95 21.45 0.28 -51.57 16 14 Si 0.95 42.74 29.55 68.60 2.03 44.77 16 15 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 17 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 18 C -0.18 -7.97 9.96 30.62 0.30 -7.67 16 19 C -0.17 -8.18 9.46 30.62 0.29 -7.89 16 20 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 21 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 22 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 2.00 7.94 -2.39 -0.02 1.98 16 27 H 0.34 13.77 8.30 -89.70 -0.74 13.02 16 28 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 29 H 0.04 1.84 8.08 -2.39 -0.02 1.82 16 30 H 0.26 14.07 8.32 -92.71 -0.77 13.30 16 31 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 32 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 34 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -59.04 289.88 3.16 -55.88 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.31 Total: 20.84 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 3.12 Total: -34.38 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -3.05 Total: -81.57 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.75 Total: -5.55 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -59.04 3.16 -55.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702595745.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.357 kcal (2) G-P(sol) polarization free energy of solvation -59.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds