Wall clock time and date at job start Mon Mar 30 2020 20:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42909 * 113.99590 * 2 1 4 4 C 1.53000 * 109.47054 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47012 * 64.37483 * 4 3 2 6 6 C 1.36933 * 120.00223 * 83.69934 * 5 4 3 7 7 H 1.08005 * 119.99730 * 351.53471 * 6 5 4 8 8 C 1.38805 * 120.00338 * 171.80256 * 6 5 4 9 9 N 1.31620 * 119.99942 * 4.05699 * 8 6 5 10 10 Si 1.86802 * 120.00260 * 184.05296 * 8 6 5 11 11 H 1.48503 * 109.46995 * 60.00164 * 10 8 6 12 12 H 1.48501 * 109.47144 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47123 * 300.00282 * 10 8 6 14 14 C 1.46502 * 119.99955 * 263.69686 * 5 4 3 15 15 H 1.09000 * 112.84922 * 134.77541 * 14 5 4 16 16 C 1.53782 * 113.61342 * 266.07916 * 14 5 4 17 17 C 1.53789 * 87.07959 * 89.11905 * 16 14 5 18 18 C 1.53778 * 113.61509 * 3.57908 * 14 5 4 19 19 H 1.08999 * 113.61217 * 25.51577 * 18 14 5 20 20 O 1.42901 * 113.61553 * 156.33150 * 18 14 5 21 21 H 1.09006 * 109.46726 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.46969 * 299.99418 * 1 2 3 23 23 H 1.09000 * 109.47239 * 60.00090 * 1 2 3 24 24 H 1.08996 * 109.46962 * 60.00500 * 3 2 1 25 25 H 1.09001 * 109.47178 * 299.99997 * 3 2 1 26 26 H 1.08998 * 109.47286 * 304.37552 * 4 3 2 27 27 H 1.08997 * 109.47291 * 184.37706 * 4 3 2 28 28 H 0.97000 * 119.99899 * 184.98685 * 9 8 6 29 29 H 1.09007 * 113.61275 * 203.66114 * 16 14 5 30 30 H 1.08997 * 113.61897 * 334.57032 * 16 14 5 31 31 H 1.08994 * 113.60958 * 270.88037 * 17 16 14 32 32 H 1.09001 * 113.61260 * 139.98013 * 17 16 14 33 33 H 0.96698 * 113.99998 * 179.97438 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1849 -0.0006 5 7 3.9745 0.5511 -1.2463 6 6 4.1396 1.3054 -2.3772 7 1 3.8176 2.3362 -2.3905 8 6 4.7157 0.7436 -3.5082 9 7 5.0301 -0.5344 -3.5210 10 14 5.0447 1.8014 -5.0124 11 1 5.9698 2.9047 -4.6488 12 1 5.6599 0.9695 -6.0776 13 1 3.7653 2.3708 -5.5065 14 6 4.2371 -0.8898 -1.2821 15 1 3.8048 -1.3772 -2.1560 16 6 5.7112 -1.2535 -1.0377 17 6 5.3697 -1.2991 0.4611 18 6 3.9225 -1.6064 0.0416 19 1 3.1733 -1.0961 0.6470 20 8 3.6550 -3.0017 -0.1123 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.6885 1.8464 0.8900 25 1 1.6885 1.8465 -0.8900 26 1 3.8522 0.5776 0.8473 27 1 3.9785 2.1776 0.0778 28 1 5.4980 -0.9112 -4.2826 29 1 5.9962 -2.2215 -1.4502 30 1 6.4071 -0.4577 -1.3030 31 1 5.4840 -0.3390 0.9642 32 1 5.8530 -2.1178 0.9943 33 1 3.4568 -3.4579 0.7169 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704100173.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:31 Heat of formation + Delta-G solvation = -31.109646 kcal Electronic energy + Delta-G solvation = -15792.533634 eV Core-core repulsion = 13242.008457 eV Total energy + Delta-G solvation = -2550.525176 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.73504 -37.04019 -34.91095 -32.62222 -31.49787 -28.18962 -25.75801 -24.70525 -23.71407 -22.98069 -20.54660 -18.60090 -16.49965 -16.08268 -15.52489 -15.45329 -14.88809 -14.31777 -14.06711 -13.71302 -13.22981 -12.75133 -12.12675 -11.76283 -11.52804 -11.34595 -10.98138 -10.83244 -10.79124 -10.38028 -10.31593 -10.05186 -9.80897 -9.43604 -9.09551 -8.93455 -8.54596 -8.21472 -6.78929 -5.53529 -3.03609 3.43503 3.48332 3.49896 4.42507 4.51955 4.96900 5.50327 5.53874 5.62358 5.72436 5.75332 5.97023 6.00554 6.01875 6.11046 6.14543 6.32033 6.50125 6.53978 6.60908 6.83772 6.84865 7.42756 7.57459 7.69466 7.77448 7.82472 8.07095 8.46818 8.54162 9.37016 9.95899 10.39407 11.41992 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.025274 B = 0.013400 C = 0.010292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.588314 B = 2089.054136 C = 2719.809816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.038 3.962 4 C 0.141 3.859 5 N -0.578 5.578 6 C -0.248 4.248 7 H 0.074 0.926 8 C -0.001 4.001 9 N -0.904 5.904 10 Si 0.906 3.094 11 H -0.287 1.287 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.236 3.764 15 H 0.097 0.903 16 C -0.107 4.107 17 C -0.187 4.187 18 C 0.043 3.957 19 H 0.071 0.929 20 O -0.549 6.549 21 H 0.076 0.924 22 H 0.028 0.972 23 H 0.034 0.966 24 H 0.028 0.972 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.251 0.749 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.493 0.474 8.325 9.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.290 6.290 3 C -0.042 4.042 4 C 0.013 3.987 5 N -0.299 5.299 6 C -0.377 4.377 7 H 0.092 0.908 8 C -0.198 4.198 9 N -0.550 5.550 10 Si 0.736 3.264 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.129 3.871 15 H 0.115 0.885 16 C -0.147 4.147 17 C -0.225 4.225 18 C -0.017 4.017 19 H 0.089 0.911 20 O -0.351 6.351 21 H 0.095 0.905 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.046 0.954 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -4.238 0.349 7.482 8.606 hybrid contribution -0.061 0.733 -0.162 0.753 sum -4.299 1.082 7.320 8.557 Atomic orbital electron populations 1.22621 0.83184 1.01704 0.98866 1.87991 1.17775 1.28204 1.95061 1.23491 0.98229 0.84244 0.98230 1.20952 0.89838 0.97451 0.90432 1.43626 1.77634 1.03063 1.05626 1.19198 1.34688 0.94144 0.89640 0.90831 1.24840 1.00771 0.96102 0.98093 1.70131 1.44234 1.10088 1.30549 0.86310 0.77920 0.79289 0.82838 1.21331 1.21672 1.21302 1.20921 0.92222 0.81737 0.92184 0.88499 1.23039 1.01386 0.99840 0.90398 1.23770 0.99044 0.99713 1.00000 1.23902 0.93744 0.81396 1.02650 0.91142 1.86486 1.92505 1.21733 1.34350 0.90536 0.95348 0.94699 0.95361 0.93502 0.92525 0.92447 0.93763 0.92196 0.92569 0.90964 0.93650 0.79585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.62 16 2 O -0.37 -7.23 8.42 -35.23 -0.30 -7.53 16 3 C 0.04 0.70 6.24 37.16 0.23 0.93 16 4 C 0.14 2.88 5.33 -4.04 -0.02 2.86 16 5 N -0.58 -14.46 2.64 -164.74 -0.43 -14.90 16 6 C -0.25 -6.74 9.80 -15.06 -0.15 -6.88 16 7 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 8 C 0.00 -0.03 5.46 -17.43 -0.10 -0.13 16 9 N -0.90 -26.17 8.58 55.49 0.48 -25.70 16 10 Si 0.91 21.98 29.56 -169.99 -5.02 16.96 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.24 6.02 2.96 -67.12 -0.20 5.83 16 15 H 0.10 2.92 6.52 -51.93 -0.34 2.58 16 16 C -0.11 -2.60 6.31 -25.91 -0.16 -2.77 16 17 C -0.19 -3.84 7.41 -25.91 -0.19 -4.03 16 18 C 0.04 0.92 4.09 -25.92 -0.11 0.81 16 19 H 0.07 1.48 4.47 -51.93 -0.23 1.24 16 20 O -0.55 -11.26 13.59 -35.23 -0.48 -11.74 16 21 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 22 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 1.10 4.55 -51.93 -0.24 0.86 16 27 H 0.06 1.11 8.09 -51.93 -0.42 0.69 16 28 H 0.25 7.17 8.32 -40.82 -0.34 6.83 16 29 H 0.06 1.50 8.14 -51.92 -0.42 1.08 16 30 H 0.06 1.48 8.08 -51.93 -0.42 1.06 16 31 H 0.07 1.42 6.68 -51.93 -0.35 1.08 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.36 5.34 9.12 45.56 0.42 5.76 16 LS Contribution 263.39 15.07 3.97 3.97 Total: -1.00 -30.69 263.39 -5.45 -36.14 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -4.08 Total: 4.56 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 0.42 Total: -1.76 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.04 Total: -40.59 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.78 Total: -19.27 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.69 -5.45 -36.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704100173.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.032 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds