Wall clock time and date at job start Mon Mar 30 2020 20:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42909 * 113.99590 * 2 1 4 4 C 1.53000 * 109.47054 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47012 * 64.37483 * 4 3 2 6 6 C 1.36933 * 120.00223 * 83.69934 * 5 4 3 7 7 H 1.08005 * 119.99730 * 351.53471 * 6 5 4 8 8 C 1.38805 * 120.00338 * 171.80256 * 6 5 4 9 9 N 1.31620 * 119.99942 * 4.05699 * 8 6 5 10 10 Si 1.86802 * 120.00260 * 184.05296 * 8 6 5 11 11 H 1.48503 * 109.46995 * 60.00164 * 10 8 6 12 12 H 1.48501 * 109.47144 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47123 * 300.00282 * 10 8 6 14 14 C 1.46502 * 119.99955 * 263.69686 * 5 4 3 15 15 H 1.09000 * 112.84922 * 134.77541 * 14 5 4 16 16 C 1.53782 * 113.61342 * 266.07916 * 14 5 4 17 17 C 1.53789 * 87.07959 * 89.11905 * 16 14 5 18 18 C 1.53778 * 113.61509 * 3.57908 * 14 5 4 19 19 H 1.08999 * 113.61217 * 25.51577 * 18 14 5 20 20 O 1.42901 * 113.61553 * 156.33150 * 18 14 5 21 21 H 1.09006 * 109.46726 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.46969 * 299.99418 * 1 2 3 23 23 H 1.09000 * 109.47239 * 60.00090 * 1 2 3 24 24 H 1.08996 * 109.46962 * 60.00500 * 3 2 1 25 25 H 1.09001 * 109.47178 * 299.99997 * 3 2 1 26 26 H 1.08998 * 109.47286 * 304.37552 * 4 3 2 27 27 H 1.08997 * 109.47291 * 184.37706 * 4 3 2 28 28 H 0.97000 * 119.99899 * 184.98685 * 9 8 6 29 29 H 1.09007 * 113.61275 * 203.66114 * 16 14 5 30 30 H 1.08997 * 113.61897 * 334.57032 * 16 14 5 31 31 H 1.08994 * 113.60958 * 270.88037 * 17 16 14 32 32 H 1.09001 * 113.61260 * 139.98013 * 17 16 14 33 33 H 0.96698 * 113.99998 * 179.97438 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1849 -0.0006 5 7 3.9745 0.5511 -1.2463 6 6 4.1396 1.3054 -2.3772 7 1 3.8176 2.3362 -2.3905 8 6 4.7157 0.7436 -3.5082 9 7 5.0301 -0.5344 -3.5210 10 14 5.0447 1.8014 -5.0124 11 1 5.9698 2.9047 -4.6488 12 1 5.6599 0.9695 -6.0776 13 1 3.7653 2.3708 -5.5065 14 6 4.2371 -0.8898 -1.2821 15 1 3.8048 -1.3772 -2.1560 16 6 5.7112 -1.2535 -1.0377 17 6 5.3697 -1.2991 0.4611 18 6 3.9225 -1.6064 0.0416 19 1 3.1733 -1.0961 0.6470 20 8 3.6550 -3.0017 -0.1123 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.6885 1.8464 0.8900 25 1 1.6885 1.8465 -0.8900 26 1 3.8522 0.5776 0.8473 27 1 3.9785 2.1776 0.0778 28 1 5.4980 -0.9112 -4.2826 29 1 5.9962 -2.2215 -1.4502 30 1 6.4071 -0.4577 -1.3030 31 1 5.4840 -0.3390 0.9642 32 1 5.8530 -2.1178 0.9943 33 1 3.4568 -3.4579 0.7169 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704100173.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:31 Heat of formation + Delta-G solvation = -54.005900 kcal Electronic energy + Delta-G solvation = -15793.526490 eV Core-core repulsion = 13242.008457 eV Total energy + Delta-G solvation = -2551.518032 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.49965 -38.48447 -36.65754 -34.44809 -33.36506 -29.89296 -27.08215 -26.66251 -25.49995 -24.72816 -22.24463 -20.46312 -18.28167 -17.84025 -17.19958 -17.01808 -16.44240 -15.98436 -15.79548 -15.37838 -15.02706 -14.53469 -13.77293 -13.36446 -13.13874 -12.96034 -12.73601 -12.69075 -12.47649 -12.27175 -11.98363 -11.81778 -11.71565 -11.29187 -10.86735 -10.45641 -10.27181 -10.17318 -8.76791 -7.62142 -5.12826 1.48368 1.50115 1.56581 2.53538 3.09769 3.27484 3.42002 3.92002 4.01032 4.25595 4.40391 4.42078 4.56656 4.56916 4.67489 4.69812 4.85384 4.87997 4.91580 4.98198 5.15049 5.24178 5.53671 5.58747 5.70972 5.80758 6.04168 6.40152 6.48999 7.10924 7.30482 7.99823 8.37812 9.30824 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.025274 B = 0.013400 C = 0.010292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.588314 B = 2089.054136 C = 2719.809816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.402 6.402 3 C 0.045 3.955 4 C 0.134 3.866 5 N -0.591 5.591 6 C -0.252 4.252 7 H 0.081 0.919 8 C -0.059 4.059 9 N -0.930 5.930 10 Si 0.967 3.033 11 H -0.278 1.278 12 H -0.300 1.300 13 H -0.281 1.281 14 C 0.227 3.773 15 H 0.040 0.960 16 C -0.108 4.108 17 C -0.163 4.163 18 C 0.062 3.938 19 H 0.085 0.915 20 O -0.567 6.567 21 H 0.087 0.913 22 H 0.057 0.943 23 H 0.029 0.971 24 H 0.068 0.932 25 H 0.027 0.973 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.240 0.760 29 H 0.041 0.959 30 H 0.026 0.974 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.264 1.229 10.340 11.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.321 6.321 3 C -0.034 4.034 4 C 0.008 3.992 5 N -0.313 5.313 6 C -0.382 4.382 7 H 0.099 0.901 8 C -0.252 4.252 9 N -0.578 5.578 10 Si 0.796 3.204 11 H -0.204 1.204 12 H -0.227 1.227 13 H -0.208 1.208 14 C 0.119 3.881 15 H 0.058 0.942 16 C -0.148 4.148 17 C -0.200 4.200 18 C 0.003 3.997 19 H 0.102 0.898 20 O -0.373 6.373 21 H 0.105 0.895 22 H 0.075 0.925 23 H 0.048 0.952 24 H 0.086 0.914 25 H 0.046 0.954 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -5.038 1.121 9.549 10.854 hybrid contribution 0.095 0.476 -0.757 0.899 sum -4.944 1.597 8.792 10.212 Atomic orbital electron populations 1.22801 0.81026 1.02886 1.00009 1.87924 1.20191 1.28664 1.95302 1.23306 0.96642 0.84309 0.99166 1.21224 0.91231 0.97925 0.88827 1.43765 1.77952 1.02910 1.06701 1.19582 1.33461 0.94614 0.90522 0.90087 1.25581 1.01669 0.97168 1.00828 1.70411 1.45262 1.11473 1.30630 0.85343 0.77778 0.77758 0.79529 1.20429 1.22708 1.20760 1.20680 0.92612 0.82432 0.92364 0.94181 1.22880 1.00248 0.97756 0.93914 1.23592 0.97950 1.01387 0.97099 1.23555 0.94730 0.81720 0.99735 0.89783 1.86428 1.92575 1.21372 1.36927 0.89471 0.92454 0.95196 0.91391 0.95447 0.91001 0.91292 0.95001 0.93996 0.95510 0.89576 0.91020 0.76374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.05 16 2 O -0.40 -14.72 8.42 -148.98 -1.25 -15.97 16 3 C 0.04 1.55 6.24 71.98 0.45 2.00 16 4 C 0.13 5.18 5.33 86.38 0.46 5.64 16 5 N -0.59 -29.48 2.64 -675.12 -1.78 -31.27 16 6 C -0.25 -13.79 9.80 84.03 0.82 -12.97 16 7 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 8 C -0.06 -3.33 5.46 84.86 0.46 -2.87 16 9 N -0.93 -56.13 8.58 21.65 0.19 -55.94 16 10 Si 0.97 46.13 29.56 68.60 2.03 48.16 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 13 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 14 C 0.23 11.70 2.96 45.52 0.13 11.83 16 15 H 0.04 2.52 6.52 -2.39 -0.02 2.50 16 16 C -0.11 -5.34 6.31 31.12 0.20 -5.14 16 17 C -0.16 -6.28 7.41 31.12 0.23 -6.05 16 18 C 0.06 2.57 4.09 31.12 0.13 2.70 16 19 H 0.08 3.27 4.47 -2.39 -0.01 3.26 16 20 O -0.57 -22.32 13.59 -148.98 -2.02 -24.34 16 21 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 22 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.07 2.55 4.55 -2.39 -0.01 2.54 16 27 H 0.07 2.49 8.09 -2.39 -0.02 2.47 16 28 H 0.24 14.38 8.32 -92.71 -0.77 13.61 16 29 H 0.04 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.03 1.43 8.08 -2.39 -0.02 1.41 16 31 H 0.09 3.11 6.68 -2.39 -0.02 3.10 16 32 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.39 10.33 9.12 -74.06 -0.68 9.66 16 Total: -1.00 -67.93 263.39 1.71 -66.22 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.42 Total: 15.95 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 4.13 Total: -2.82 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -1.60 Total: -87.21 kcal Atomic # 8 Polarization: -37.03 SS G_CDS: -3.28 Total: -40.31 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -67.93 1.71 -66.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704100173.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.216 kcal (2) G-P(sol) polarization free energy of solvation -67.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds