Wall clock time and date at job start Mon Mar 30 2020 20:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00375 * 2 1 4 4 O 1.42901 * 112.90577 * 296.19280 * 3 2 1 5 5 C 1.42900 * 114.00144 * 315.62824 * 4 3 2 6 6 C 1.53775 * 113.61782 * 164.93556 * 3 2 1 7 7 C 1.53781 * 87.08442 * 270.88685 * 6 3 2 8 8 C 1.53781 * 87.08034 * 334.56882 * 7 6 3 9 9 H 1.09003 * 113.61241 * 270.88445 * 8 7 6 10 10 N 1.46894 * 113.61503 * 139.98154 * 8 7 6 11 11 C 1.46896 * 111.00203 * 104.50366 * 10 8 7 12 12 C 1.50704 * 109.47307 * 179.97438 * 11 10 8 13 13 H 1.08001 * 119.99839 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99962 * 179.97438 * 12 11 10 15 15 N 1.31523 * 120.00372 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99996 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46795 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47045 * 120.00246 * 16 14 12 19 19 H 1.48496 * 109.47091 * 239.99791 * 16 14 12 20 20 H 1.08997 * 109.47418 * 63.01260 * 1 2 3 21 21 H 1.09005 * 109.47047 * 183.01464 * 1 2 3 22 22 H 1.09005 * 109.47035 * 303.01222 * 1 2 3 23 23 H 1.08997 * 109.46953 * 175.14300 * 5 4 3 24 24 H 1.08999 * 109.46430 * 295.13552 * 5 4 3 25 25 H 1.08991 * 109.47482 * 55.13437 * 5 4 3 26 26 H 1.09000 * 113.61516 * 156.33697 * 6 3 2 27 27 H 1.08999 * 113.61027 * 25.43970 * 6 3 2 28 28 H 1.08998 * 113.61165 * 220.01757 * 7 6 3 29 29 H 1.09006 * 113.61133 * 89.11399 * 7 6 3 30 30 H 1.00895 * 111.00242 * 340.54468 * 10 8 7 31 31 H 1.08996 * 109.47142 * 300.00067 * 11 10 8 32 32 H 1.09003 * 109.47098 * 59.99732 * 11 10 8 33 33 H 0.97000 * 120.00100 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 1.7058 2.0499 -1.1812 5 6 1.8341 1.2994 -2.3905 6 6 3.5038 1.3148 0.3662 7 6 3.0627 1.4530 1.8329 8 6 1.7670 2.0880 1.3013 9 1 1.8290 3.1693 1.1786 10 7 0.5626 1.6631 2.0271 11 6 0.0890 2.7230 2.9272 12 6 -1.1453 2.2519 3.6523 13 1 -1.5383 1.2638 3.4637 14 6 -1.7721 3.0820 4.5573 15 7 -1.2933 4.2852 4.7873 16 14 -3.3017 2.4978 5.4566 17 1 -3.6334 1.1167 5.0234 18 1 -3.0504 2.5102 6.9202 19 1 -4.4367 3.4020 5.1417 20 1 -0.3634 0.4663 -0.9157 21 1 -0.3633 -1.0263 0.0540 22 1 -0.3633 0.5599 0.8618 23 1 1.5036 1.9078 -3.2323 24 1 2.8771 1.0170 -2.5337 25 1 1.2198 0.4014 -2.3277 26 1 4.0407 2.1847 -0.0121 27 1 4.0122 0.3752 0.1498 28 1 3.6802 2.1400 2.4116 29 1 2.9071 0.4975 2.3339 30 1 0.7289 0.8064 2.5333 31 1 0.8683 2.9597 3.6515 32 1 -0.1493 3.6138 2.3459 33 1 -1.7346 4.8693 5.4238 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710954693.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:55 Heat of formation + Delta-G solvation = -60.567855 kcal Electronic energy + Delta-G solvation = -15246.004665 eV Core-core repulsion = 12694.202085 eV Total energy + Delta-G solvation = -2551.802580 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.01242 -36.21394 -35.37179 -33.79688 -31.83477 -26.97454 -26.94991 -25.91827 -23.66895 -23.38866 -21.50652 -19.48966 -17.33437 -16.79627 -15.72817 -15.35275 -14.67189 -14.46182 -14.20969 -14.10206 -13.41377 -13.24437 -12.47642 -12.41232 -12.07594 -11.58658 -11.41277 -11.21179 -11.15733 -10.81976 -10.80390 -10.62811 -10.24226 -10.01364 -9.59609 -9.45453 -9.01342 -8.49180 -7.17884 -6.06092 -4.08649 3.29511 3.36961 3.41453 3.80439 4.00556 4.41299 4.84621 4.85967 5.11999 5.29972 5.38887 5.50485 5.55393 5.59443 5.78546 5.88925 5.93582 5.99912 6.10268 6.13892 6.31339 6.45019 6.80491 6.94265 7.19774 7.41268 7.71882 7.86701 8.07341 8.29731 8.50784 9.00221 9.56526 11.04886 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.044873 B = 0.007410 C = 0.007011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.827952 B = 3777.787336 C = 3992.683264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.380 6.380 3 C 0.247 3.753 4 O -0.385 6.385 5 C 0.034 3.966 6 C -0.141 4.141 7 C -0.161 4.161 8 C 0.069 3.931 9 H 0.104 0.896 10 N -0.670 5.670 11 C 0.191 3.809 12 C -0.516 4.516 13 H 0.063 0.937 14 C 0.057 3.943 15 N -0.896 5.896 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 H 0.029 0.971 21 H 0.068 0.932 22 H 0.120 0.880 23 H 0.078 0.922 24 H 0.036 0.964 25 H 0.046 0.954 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.337 0.663 31 H -0.009 1.009 32 H 0.030 0.970 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.371 -6.181 -9.214 13.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.300 6.300 3 C 0.169 3.831 4 O -0.306 6.306 5 C -0.063 4.063 6 C -0.179 4.179 7 C -0.200 4.200 8 C -0.043 4.043 9 H 0.122 0.878 10 N -0.299 5.299 11 C 0.065 3.935 12 C -0.555 4.555 13 H 0.081 0.919 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.210 1.210 20 H 0.048 0.952 21 H 0.086 0.914 22 H 0.138 0.862 23 H 0.096 0.904 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.115 0.885 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.156 0.844 31 H 0.009 0.991 32 H 0.048 0.952 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.926 -5.810 -9.582 13.174 hybrid contribution -0.269 -0.323 0.999 1.083 sum 6.658 -6.132 -8.583 12.474 Atomic orbital electron populations 1.23492 0.79417 1.02268 1.04598 1.87793 1.21990 1.26028 1.94207 1.24329 0.92223 0.81429 0.85154 1.88099 1.90121 1.38036 1.14301 1.22545 0.99950 0.96884 0.86878 1.23334 0.94892 1.02774 0.96936 1.23399 0.99069 1.01857 0.95709 1.23618 0.89302 0.99711 0.91708 0.87765 1.60495 1.28069 1.08256 1.33121 1.19659 0.94529 0.89730 0.89560 1.21205 1.10678 1.01298 1.22315 0.91894 1.24985 0.97765 0.94876 0.96866 1.69973 1.40458 1.07775 1.35348 0.86431 0.82775 0.78859 0.79278 1.19648 1.21085 1.20985 0.95224 0.91374 0.86238 0.90367 0.94556 0.93518 0.88520 0.90663 0.90697 0.89437 0.84446 0.99124 0.95193 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.04 10.14 101.05 1.02 0.99 16 2 O -0.38 -6.55 9.55 -58.60 -0.56 -7.11 16 3 C 0.25 4.17 1.07 -25.92 -0.03 4.14 16 4 O -0.38 -6.62 10.37 -58.60 -0.61 -7.23 16 5 C 0.03 0.45 10.57 101.05 1.07 1.52 16 6 C -0.14 -1.99 7.74 -25.92 -0.20 -2.19 16 7 C -0.16 -2.46 7.64 -25.92 -0.20 -2.66 16 8 C 0.07 1.27 3.93 -66.90 -0.26 1.01 16 9 H 0.10 2.03 7.90 -51.93 -0.41 1.62 16 10 N -0.67 -14.10 3.13 -107.13 -0.34 -14.44 16 11 C 0.19 4.92 5.30 -4.98 -0.03 4.89 16 12 C -0.52 -14.36 9.32 -34.44 -0.32 -14.68 16 13 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 16 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H 0.03 0.49 7.04 -51.93 -0.37 0.12 16 21 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.12 2.31 4.70 -51.93 -0.24 2.07 16 23 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.64 6.32 -51.93 -0.33 0.31 16 26 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.09 1.33 7.83 -51.93 -0.41 0.92 16 30 H 0.34 6.85 8.02 -39.29 -0.32 6.53 16 31 H -0.01 -0.25 8.14 -51.93 -0.42 -0.67 16 32 H 0.03 0.84 8.13 -51.93 -0.42 0.42 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 271.43 15.07 4.09 4.09 Total: -1.00 -29.79 271.43 -5.73 -35.52 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -5.00 Total: 4.01 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 0.96 Total: -5.47 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.40 Total: -40.29 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -1.17 Total: -14.33 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.79 -5.73 -35.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710954693.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.048 kcal (2) G-P(sol) polarization free energy of solvation -29.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds