Wall clock time and date at job start Mon Mar 30 2020 20:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00375 * 2 1 4 4 O 1.42901 * 112.90577 * 296.19280 * 3 2 1 5 5 C 1.42900 * 114.00144 * 315.62824 * 4 3 2 6 6 C 1.53775 * 113.61782 * 164.93556 * 3 2 1 7 7 C 1.53781 * 87.08442 * 270.88685 * 6 3 2 8 8 C 1.53781 * 87.08034 * 334.56882 * 7 6 3 9 9 H 1.09003 * 113.61241 * 270.88445 * 8 7 6 10 10 N 1.46894 * 113.61503 * 139.98154 * 8 7 6 11 11 C 1.46896 * 111.00203 * 104.50366 * 10 8 7 12 12 C 1.50704 * 109.47307 * 179.97438 * 11 10 8 13 13 H 1.08001 * 119.99839 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99962 * 179.97438 * 12 11 10 15 15 N 1.31523 * 120.00372 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99996 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46795 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47045 * 120.00246 * 16 14 12 19 19 H 1.48496 * 109.47091 * 239.99791 * 16 14 12 20 20 H 1.08997 * 109.47418 * 63.01260 * 1 2 3 21 21 H 1.09005 * 109.47047 * 183.01464 * 1 2 3 22 22 H 1.09005 * 109.47035 * 303.01222 * 1 2 3 23 23 H 1.08997 * 109.46953 * 175.14300 * 5 4 3 24 24 H 1.08999 * 109.46430 * 295.13552 * 5 4 3 25 25 H 1.08991 * 109.47482 * 55.13437 * 5 4 3 26 26 H 1.09000 * 113.61516 * 156.33697 * 6 3 2 27 27 H 1.08999 * 113.61027 * 25.43970 * 6 3 2 28 28 H 1.08998 * 113.61165 * 220.01757 * 7 6 3 29 29 H 1.09006 * 113.61133 * 89.11399 * 7 6 3 30 30 H 1.00895 * 111.00242 * 340.54468 * 10 8 7 31 31 H 1.08996 * 109.47142 * 300.00067 * 11 10 8 32 32 H 1.09003 * 109.47098 * 59.99732 * 11 10 8 33 33 H 0.97000 * 120.00100 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 1.7058 2.0499 -1.1812 5 6 1.8341 1.2994 -2.3905 6 6 3.5038 1.3148 0.3662 7 6 3.0627 1.4530 1.8329 8 6 1.7670 2.0880 1.3013 9 1 1.8290 3.1693 1.1786 10 7 0.5626 1.6631 2.0271 11 6 0.0890 2.7230 2.9272 12 6 -1.1453 2.2519 3.6523 13 1 -1.5383 1.2638 3.4637 14 6 -1.7721 3.0820 4.5573 15 7 -1.2933 4.2852 4.7873 16 14 -3.3017 2.4978 5.4566 17 1 -3.6334 1.1167 5.0234 18 1 -3.0504 2.5102 6.9202 19 1 -4.4367 3.4020 5.1417 20 1 -0.3634 0.4663 -0.9157 21 1 -0.3633 -1.0263 0.0540 22 1 -0.3633 0.5599 0.8618 23 1 1.5036 1.9078 -3.2323 24 1 2.8771 1.0170 -2.5337 25 1 1.2198 0.4014 -2.3277 26 1 4.0407 2.1847 -0.0121 27 1 4.0122 0.3752 0.1498 28 1 3.6802 2.1400 2.4116 29 1 2.9071 0.4975 2.3339 30 1 0.7289 0.8064 2.5333 31 1 0.8683 2.9597 3.6515 32 1 -0.1493 3.6138 2.3459 33 1 -1.7346 4.8693 5.4238 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710954693.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:54 Heat of formation + Delta-G solvation = -80.833997 kcal Electronic energy + Delta-G solvation = -15246.883470 eV Core-core repulsion = 12694.202085 eV Total energy + Delta-G solvation = -2552.681386 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.34462 -37.60494 -36.70786 -35.64324 -33.77022 -28.87033 -28.11106 -27.31322 -25.20410 -24.73906 -23.39445 -20.85286 -18.76649 -18.55393 -17.37478 -16.75315 -16.49528 -15.87242 -15.57111 -15.44609 -15.03600 -14.56222 -14.34553 -13.98887 -13.40463 -13.15350 -12.95268 -12.81331 -12.71100 -12.45661 -12.29706 -12.05137 -12.00454 -11.53063 -11.34059 -10.93765 -10.64036 -10.53709 -8.86819 -8.22581 -6.33882 1.41697 1.42402 1.56001 2.38857 2.53822 2.75899 3.11190 3.45252 3.59471 3.83123 3.92334 4.20758 4.51692 4.54333 4.57920 4.64487 4.73776 4.81480 4.86709 4.92950 5.00543 5.06074 5.19124 5.23447 5.49995 5.59366 5.67412 6.00027 6.36654 6.60100 6.64022 6.87114 7.37119 8.89138 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.044873 B = 0.007410 C = 0.007011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.827952 B = 3777.787336 C = 3992.683264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.380 6.380 3 C 0.245 3.755 4 O -0.409 6.409 5 C 0.029 3.971 6 C -0.122 4.122 7 C -0.152 4.152 8 C 0.047 3.953 9 H 0.085 0.915 10 N -0.663 5.663 11 C 0.209 3.791 12 C -0.534 4.534 13 H 0.067 0.933 14 C 0.002 3.998 15 N -0.934 5.934 16 Si 0.973 3.027 17 H -0.261 1.261 18 H -0.278 1.278 19 H -0.280 1.280 20 H 0.028 0.972 21 H 0.091 0.909 22 H 0.095 0.905 23 H 0.096 0.904 24 H 0.054 0.946 25 H 0.042 0.958 26 H 0.112 0.888 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.342 0.658 31 H -0.033 1.033 32 H -0.004 1.004 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.644 -7.638 -9.684 14.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.300 6.300 3 C 0.166 3.834 4 O -0.331 6.331 5 C -0.067 4.067 6 C -0.160 4.160 7 C -0.191 4.191 8 C -0.065 4.065 9 H 0.103 0.897 10 N -0.293 5.293 11 C 0.082 3.918 12 C -0.572 4.572 13 H 0.085 0.915 14 C -0.197 4.197 15 N -0.574 5.574 16 Si 0.797 3.203 17 H -0.185 1.185 18 H -0.203 1.203 19 H -0.206 1.206 20 H 0.046 0.954 21 H 0.109 0.891 22 H 0.112 0.888 23 H 0.115 0.885 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.130 0.870 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.161 0.839 31 H -0.015 1.015 32 H 0.014 0.986 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.219 -7.287 -10.076 14.379 hybrid contribution -0.328 0.152 1.068 1.127 sum 6.891 -7.136 -9.008 13.400 Atomic orbital electron populations 1.23399 0.79484 1.03287 1.03250 1.87798 1.21918 1.26178 1.94148 1.24407 0.93849 0.80762 0.84364 1.88063 1.90514 1.39070 1.15418 1.22755 1.01168 0.96833 0.85906 1.23291 0.93044 1.04506 0.95150 1.23339 0.97059 1.01727 0.96995 1.23841 0.89830 0.99304 0.93495 0.89679 1.60453 1.30146 1.06918 1.31776 1.19250 0.93645 0.89897 0.89019 1.21568 1.11407 1.01576 1.22657 0.91472 1.25945 1.01144 0.94875 0.97707 1.70102 1.42130 1.09076 1.36126 0.85285 0.78357 0.78719 0.77933 1.18494 1.20339 1.20601 0.95356 0.89084 0.88765 0.88535 0.92749 0.93906 0.86958 0.88637 0.89779 0.89103 0.83945 1.01525 0.98567 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 10.14 113.37 1.15 1.20 16 2 O -0.38 -12.45 9.55 -126.63 -1.21 -13.66 16 3 C 0.24 7.94 1.07 31.12 0.03 7.97 16 4 O -0.41 -13.61 10.37 -126.63 -1.31 -14.93 16 5 C 0.03 0.72 10.57 113.37 1.20 1.92 16 6 C -0.12 -3.12 7.74 31.12 0.24 -2.88 16 7 C -0.15 -4.44 7.64 31.12 0.24 -4.21 16 8 C 0.05 1.74 3.93 45.44 0.18 1.92 16 9 H 0.09 3.44 7.90 -2.39 -0.02 3.42 16 10 N -0.66 -28.47 3.13 -492.86 -1.54 -30.02 16 11 C 0.21 11.18 5.30 85.56 0.45 11.64 16 12 C -0.53 -30.16 9.32 25.60 0.24 -29.92 16 13 H 0.07 3.65 7.81 -2.91 -0.02 3.63 16 14 C 0.00 0.09 5.46 84.65 0.46 0.55 16 15 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 16 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 17 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 H 0.03 0.91 7.04 -2.39 -0.02 0.90 16 21 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 22 H 0.09 3.64 4.70 -2.38 -0.01 3.63 16 23 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.04 1.08 6.32 -2.39 -0.02 1.07 16 26 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.09 2.61 7.83 -2.38 -0.02 2.59 16 30 H 0.34 13.97 8.02 -89.70 -0.72 13.25 16 31 H -0.03 -1.88 8.14 -2.39 -0.02 -1.90 16 32 H 0.00 -0.23 8.13 -2.39 -0.02 -0.25 16 33 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -64.12 271.43 2.81 -61.31 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.37 Total: 19.18 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 4.19 Total: -11.81 kcal Atomic # 7 Polarization: -84.94 SS G_CDS: -1.26 Total: -86.20 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -2.52 Total: -28.58 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -64.12 2.81 -61.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710954693.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.525 kcal (2) G-P(sol) polarization free energy of solvation -64.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds