Wall clock time and date at job start Mon Mar 30 2020 20:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47102 * 2 1 4 4 C 1.50700 * 109.47213 * 119.99698 * 2 1 3 5 5 H 1.07998 * 119.99868 * 120.00128 * 4 2 1 6 6 C 1.37879 * 120.00437 * 300.00233 * 4 2 1 7 7 N 1.31516 * 119.99472 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00088 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47017 * 60.00538 * 8 6 4 10 10 H 1.48503 * 109.46855 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47173 * 299.99831 * 8 6 4 12 12 N 1.46898 * 109.47588 * 240.00142 * 2 1 3 13 13 C 1.46850 * 110.99813 * 306.04699 * 12 2 1 14 14 C 1.53033 * 109.52490 * 174.15761 * 13 12 2 15 15 C 1.53119 * 109.27787 * 59.17980 * 14 13 12 16 16 C 1.53126 * 109.16048 * 302.34386 * 15 14 13 17 17 H 1.09006 * 109.50177 * 297.71578 * 16 15 14 18 18 C 1.52996 * 109.50254 * 177.59784 * 16 15 14 19 19 F 1.39905 * 109.46647 * 180.02562 * 18 16 15 20 20 C 1.46845 * 111.00565 * 181.83633 * 12 2 1 21 21 H 1.09003 * 109.47544 * 299.99862 * 1 2 3 22 22 H 1.08997 * 109.46890 * 60.00163 * 1 2 3 23 23 H 1.09002 * 109.47102 * 179.97438 * 1 2 3 24 24 H 0.96997 * 119.99403 * 180.02562 * 7 6 4 25 25 H 1.09005 * 109.46186 * 54.13967 * 13 12 2 26 26 H 1.08998 * 109.46012 * 294.17361 * 13 12 2 27 27 H 1.09004 * 109.50318 * 299.23790 * 14 13 12 28 28 H 1.08999 * 109.53400 * 179.13825 * 14 13 12 29 29 H 1.08999 * 109.52185 * 182.44278 * 15 14 13 30 30 H 1.09000 * 109.57842 * 62.27972 * 15 14 13 31 31 H 1.08995 * 109.47049 * 299.99849 * 18 16 15 32 32 H 1.08999 * 109.47332 * 59.99997 * 18 16 15 33 33 H 1.08995 * 109.46315 * 65.81881 * 20 12 2 34 34 H 1.09005 * 109.45975 * 305.85394 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.8064 -1.1207 4.0082 10 1 1.8270 -0.4198 5.2205 11 1 1.8259 -2.5202 4.0078 12 7 2.0197 -0.6924 -1.1994 13 6 1.4346 -2.0349 -1.3078 14 6 1.8507 -2.6685 -2.6372 15 6 3.3784 -2.7505 -2.7019 16 6 3.9645 -1.3453 -2.5382 17 1 3.6308 -0.7136 -3.3615 18 6 5.4923 -1.4256 -2.5416 19 9 6.0270 -0.1415 -2.3914 20 6 3.4870 -0.7502 -1.2116 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7087 1.1612 3.4844 25 1 0.3478 -1.9620 -1.2646 26 1 1.7899 -2.6536 -0.4837 27 1 1.4838 -2.0576 -3.4621 28 1 1.4291 -3.6709 -2.7111 29 1 3.6806 -3.1612 -3.6652 30 1 3.7439 -3.3931 -1.9009 31 1 5.8249 -2.0559 -1.7170 32 1 5.8316 -1.8528 -3.4852 33 1 3.8327 -1.3748 -0.3880 34 1 3.8910 0.2559 -1.0986 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711415694.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:01 Heat of formation + Delta-G solvation = -65.094417 kcal Electronic energy + Delta-G solvation = -15348.140969 eV Core-core repulsion = 12808.514892 eV Total energy + Delta-G solvation = -2539.626077 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.31110 -38.49090 -34.63413 -32.09704 -30.99957 -28.58233 -25.75530 -24.97442 -23.38529 -21.63611 -19.71380 -19.08105 -16.29363 -15.72345 -15.52930 -15.39349 -14.53697 -14.31043 -13.87288 -13.30893 -13.21075 -12.73469 -12.47390 -12.01354 -11.45801 -11.27388 -11.03732 -10.86905 -10.73871 -10.47961 -10.37505 -10.27793 -10.23274 -9.97067 -9.66343 -9.36132 -9.15712 -8.37309 -7.10473 -5.97036 -4.10319 3.28293 3.33524 3.35695 4.40491 4.71405 4.93471 5.07306 5.22321 5.26018 5.28566 5.42008 5.69182 5.85749 5.92868 6.00627 6.17024 6.25227 6.31241 6.44349 6.54813 6.71568 6.78555 6.90656 6.98454 7.07205 7.20078 7.60672 7.73573 8.00337 8.17909 8.37759 8.47011 8.99234 9.57116 11.02737 Molecular weight = 215.14amu Principal moments of inertia in cm(-1) A = 0.028759 B = 0.009962 C = 0.008783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.367295 B = 2810.144046 C = 3187.189023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.207 3.793 3 H 0.039 0.961 4 C -0.542 4.542 5 H 0.054 0.946 6 C 0.068 3.932 7 N -0.887 5.887 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.278 1.278 12 N -0.537 5.537 13 C 0.057 3.943 14 C -0.116 4.116 15 C -0.109 4.109 16 C -0.120 4.120 17 H 0.082 0.918 18 C 0.069 3.931 19 F -0.219 7.219 20 C 0.072 3.928 21 H 0.084 0.916 22 H 0.014 0.986 23 H 0.028 0.972 24 H 0.261 0.739 25 H 0.072 0.928 26 H 0.033 0.967 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.316 -6.160 -8.933 11.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.101 3.899 3 H 0.057 0.943 4 C -0.581 4.581 5 H 0.073 0.927 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.204 1.204 12 N -0.261 5.261 13 C -0.072 4.072 14 C -0.154 4.154 15 C -0.147 4.147 16 C -0.140 4.140 17 H 0.101 0.899 18 C 0.013 3.987 19 F -0.200 7.200 20 C -0.057 4.057 21 H 0.102 0.898 22 H 0.034 0.966 23 H 0.047 0.953 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.052 0.948 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.079 -5.724 -9.186 11.566 hybrid contribution 0.629 -0.910 1.719 2.045 sum 4.708 -6.634 -7.466 11.042 Atomic orbital electron populations 1.21859 0.97845 0.99116 1.00341 1.19260 0.92192 0.94186 0.84284 0.94292 1.21674 1.31804 1.12843 0.91768 0.92749 1.24908 0.94858 0.94858 0.98834 1.69871 1.36390 1.22734 1.23520 0.86738 0.79246 0.79821 0.82684 1.20340 1.21205 1.20396 1.62407 1.05145 1.16506 1.42025 1.21959 0.99866 0.90722 0.94636 1.21603 0.94687 0.99724 0.99339 1.21491 0.96742 0.95676 1.00812 1.21870 0.92907 0.98036 1.01160 0.89929 1.22030 0.94110 0.80342 1.02199 1.92751 1.87654 1.42198 1.97379 1.21799 0.90072 1.00439 0.93370 0.89753 0.96643 0.95299 0.92857 0.91013 0.94833 0.91801 0.92472 0.92571 0.92251 0.91193 0.91406 0.94376 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 8.55 37.16 0.32 -2.95 16 2 C 0.21 5.25 2.45 -68.87 -0.17 5.08 16 3 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 4 C -0.54 -14.68 7.19 -34.44 -0.25 -14.93 16 5 H 0.05 1.48 5.84 -52.49 -0.31 1.17 16 6 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 7 N -0.89 -25.27 11.32 55.43 0.63 -24.64 16 8 Si 0.89 21.32 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.54 -11.62 4.70 -228.09 -1.07 -12.69 16 13 C 0.06 1.10 4.76 -3.83 -0.02 1.08 16 14 C -0.12 -1.75 6.09 -26.65 -0.16 -1.92 16 15 C -0.11 -1.51 5.29 -26.60 -0.14 -1.65 16 16 C -0.12 -1.87 2.68 -90.54 -0.24 -2.11 16 17 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 18 C 0.07 0.93 6.96 37.16 0.26 1.19 16 19 F -0.22 -3.60 16.86 2.25 0.04 -3.56 16 20 C 0.07 1.44 4.16 -3.84 -0.02 1.42 16 21 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 22 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.03 0.67 6.20 -51.93 -0.32 0.35 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.07 1.42 5.87 -51.93 -0.30 1.12 16 26 H 0.03 0.71 7.03 -51.93 -0.37 0.34 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.82 6.57 -51.93 -0.34 0.48 16 34 H 0.07 1.48 7.81 -51.93 -0.41 1.07 16 LS Contribution 264.15 15.07 3.98 3.98 Total: -1.00 -28.28 264.15 -7.26 -35.54 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -5.30 Total: -1.91 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -0.51 Total: -13.01 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: -0.44 Total: -37.33 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.04 Total: -3.56 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.28 -7.26 -35.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711415694.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.559 kcal (2) G-P(sol) polarization free energy of solvation -28.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds