Wall clock time and date at job start Mon Mar 30 2020 20:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30941 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48499 * 109.47322 * 240.00107 * 3 2 1 5 5 H 1.48504 * 109.47343 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47086 * 119.99928 * 3 2 1 7 7 C 1.39852 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99595 * 197.42836 * 7 2 1 9 9 C 1.40912 * 120.00156 * 17.41718 * 7 2 1 10 10 C 1.40773 * 120.26969 * 25.12615 * 9 7 2 11 11 C 1.36485 * 119.96688 * 179.97438 * 10 9 7 12 12 F 1.35099 * 119.72939 * 180.02562 * 11 10 9 13 13 C 1.39491 * 120.53875 * 359.97438 * 11 10 9 14 14 F 1.35101 * 119.71787 * 180.02562 * 13 11 10 15 15 C 1.38295 * 120.56133 * 0.02562 * 13 11 10 16 16 C 1.38803 * 120.01553 * 0.02562 * 15 13 11 17 17 S 1.76205 * 120.26780 * 179.97438 * 16 15 13 18 18 H 0.96999 * 119.99411 * 0.02562 * 1 2 3 19 19 H 1.07998 * 120.02451 * 0.25179 * 10 9 7 20 20 H 1.08000 * 119.99536 * 179.97438 * 15 13 11 21 21 H 1.41000 * 99.99965 * 90.00052 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2434 1.6177 0.0000 4 1 3.0972 1.6964 -1.2125 5 1 1.2784 2.7465 -0.0006 6 1 3.0972 1.6964 1.2125 7 6 2.0087 -1.2111 -0.0005 8 1 3.0515 -1.2326 0.2796 9 6 1.3526 -2.4034 -0.3663 10 6 0.2246 -2.3632 -1.2076 11 6 -0.4058 -3.5218 -1.5584 12 9 -1.4876 -3.4778 -2.3665 13 6 0.0585 -4.7511 -1.0904 14 9 -0.5779 -5.8878 -1.4485 15 6 1.1646 -4.8162 -0.2628 16 6 1.8228 -3.6522 0.1094 17 16 3.2324 -3.7273 1.1640 18 1 -0.4849 0.8401 -0.0004 19 1 -0.1392 -1.4166 -1.5789 20 1 1.5160 -5.7729 0.0946 21 1 4.2536 -3.8491 0.1994 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716265617.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:15 Heat of formation + Delta-G solvation = -81.206907 kcal Electronic energy + Delta-G solvation = -12040.325970 eV Core-core repulsion = 9449.908918 eV Total energy + Delta-G solvation = -2590.417052 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 216.012 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.25755 -47.31391 -37.43707 -33.95702 -29.86757 -29.49453 -25.49343 -22.03342 -21.29559 -18.01581 -17.07642 -16.27383 -15.88222 -15.22225 -15.10581 -14.86605 -13.83297 -13.50963 -13.31942 -12.97293 -12.32442 -12.20678 -11.77887 -11.32527 -11.00879 -10.75118 -10.42712 -10.18287 -9.73415 -9.41535 -7.89675 -7.63209 -7.19529 -7.07339 -4.80891 1.99725 2.36360 2.86786 2.89673 2.92049 2.95826 3.62941 3.65892 4.13021 5.10202 5.19142 5.64436 5.92539 6.44097 6.54209 6.74496 6.97440 7.07707 7.26757 7.49037 7.80752 8.13645 8.35790 8.40096 9.71970 Molecular weight = 216.01amu Principal moments of inertia in cm(-1) A = 0.029124 B = 0.012720 C = 0.009090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.182894 B = 2200.733788 C = 3079.635658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.071 3.929 3 Si 0.921 3.079 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.413 4.413 8 H 0.102 0.898 9 C 0.147 3.853 10 C -0.174 4.174 11 C 0.103 3.897 12 F -0.154 7.154 13 C -0.091 4.091 14 F -0.162 7.162 15 C -0.035 4.035 16 C -0.223 4.223 17 S -0.151 6.151 18 H 0.292 0.708 19 H 0.141 0.859 20 H 0.121 0.879 21 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.633 0.252 -0.368 2.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.152 4.152 3 Si 0.743 3.257 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.440 4.440 8 H 0.120 0.880 9 C 0.140 3.860 10 C -0.195 4.195 11 C 0.083 3.917 12 F -0.133 7.133 13 C -0.113 4.113 14 F -0.141 7.141 15 C -0.057 4.057 16 C -0.337 4.337 17 S 0.007 5.993 18 H 0.103 0.897 19 H 0.159 0.841 20 H 0.139 0.861 21 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 2.965 0.358 0.367 3.009 hybrid contribution -0.325 0.484 -1.496 1.605 sum 2.640 0.842 -1.129 2.992 Atomic orbital electron populations 1.69839 1.07978 1.30826 1.30146 1.26201 0.94898 1.02349 0.91713 0.86125 0.80154 0.78747 0.80631 1.18383 1.19894 1.18127 1.19886 0.99137 0.90232 1.34704 0.87974 1.17522 0.89425 0.91804 0.87238 1.21005 0.99872 0.96000 1.02668 1.17490 0.86285 0.93900 0.94011 1.91379 1.53087 1.97429 1.71384 1.17027 1.01206 0.80374 1.12734 1.91316 1.81971 1.49045 1.91779 1.20789 0.92773 0.97951 0.94143 1.20672 1.04685 0.94779 1.13540 1.86165 1.02471 1.97597 1.13117 0.89678 0.84123 0.86120 0.97501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.85 10.97 55.54 0.61 -17.24 14 2 C 0.07 1.59 5.14 -17.33 -0.09 1.50 14 3 Si 0.92 16.69 29.59 -169.99 -5.03 11.66 14 4 H -0.26 -4.68 7.11 56.52 0.40 -4.27 14 5 H -0.27 -4.85 7.11 56.52 0.40 -4.45 14 6 H -0.26 -4.63 7.11 56.52 0.40 -4.23 14 7 C -0.41 -9.82 8.46 -37.97 -0.32 -10.14 14 8 H 0.10 2.33 7.01 -52.49 -0.37 1.97 14 9 C 0.15 3.62 5.58 -106.62 -0.60 3.02 14 10 C -0.17 -4.30 8.58 -39.26 -0.34 -4.64 14 11 C 0.10 2.51 7.25 -39.75 -0.29 2.22 14 12 F -0.15 -3.64 17.16 2.25 0.04 -3.60 14 13 C -0.09 -2.15 7.31 -39.09 -0.29 -2.43 14 14 F -0.16 -3.71 17.16 2.25 0.04 -3.68 14 15 C -0.03 -0.78 9.76 -39.35 -0.38 -1.16 14 16 C -0.22 -5.17 6.19 -38.07 -0.24 -5.40 14 17 S -0.15 -3.06 24.32 -107.50 -2.61 -5.68 14 18 H 0.29 6.12 8.30 -40.82 -0.34 5.79 14 19 H 0.14 3.51 6.19 -52.49 -0.32 3.18 14 20 H 0.12 2.39 8.06 -52.49 -0.42 1.96 14 21 H 0.06 1.13 9.55 96.90 0.93 2.06 14 LS Contribution 217.91 15.07 3.28 3.28 Total: -1.00 -24.73 217.91 -5.53 -30.27 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: 0.68 Total: 2.01 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -2.54 Total: -17.02 kcal Atomic # 7 Polarization: -17.85 SS G_CDS: 0.61 Total: -17.24 kcal Atomic # 9 Polarization: -7.35 SS G_CDS: 0.08 Total: -7.27 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -5.03 Total: 11.66 kcal Atomic # 16 Polarization: -3.06 SS G_CDS: -2.61 Total: -5.68 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -24.73 -5.53 -30.27 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716265617.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.940 kcal (2) G-P(sol) polarization free energy of solvation -24.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds