Wall clock time and date at job start Mon Mar 30 2020 20:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42906 * 113.99851 * 2 1 4 4 C 1.53004 * 109.47046 * 179.97438 * 3 2 1 5 5 C 1.52999 * 110.63961 * 303.14033 * 4 3 2 6 6 O 1.42902 * 109.47003 * 56.86128 * 5 4 3 7 7 C 1.55156 * 110.71804 * 180.02562 * 4 3 2 8 8 C 1.54906 * 101.61451 * 277.11632 * 7 4 3 9 9 N 1.47471 * 104.81210 * 323.04512 * 8 7 4 10 10 C 1.36936 * 125.62644 * 204.04433 * 9 8 7 11 11 H 1.08001 * 119.99967 * 180.02562 * 10 9 8 12 12 C 1.38816 * 120.00461 * 0.03195 * 10 9 8 13 13 N 1.31616 * 119.99418 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00126 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47127 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47089 * 119.99521 * 14 12 10 17 17 H 1.48496 * 109.46839 * 239.99358 * 14 12 10 18 18 C 1.47017 * 108.71970 * 24.07007 * 9 8 7 19 19 H 1.08998 * 109.47021 * 300.00087 * 1 2 3 20 20 H 1.09004 * 109.47136 * 59.99967 * 1 2 3 21 21 H 1.09004 * 109.46968 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46862 * 60.00193 * 3 2 1 23 23 H 1.08993 * 109.47196 * 299.99831 * 3 2 1 24 24 H 1.09006 * 109.47368 * 176.85839 * 5 4 3 25 25 H 1.08995 * 109.47470 * 296.85925 * 5 4 3 26 26 H 0.96702 * 113.99500 * 179.97438 * 6 5 4 27 27 H 1.09002 * 111.00677 * 35.21216 * 7 4 3 28 28 H 1.09002 * 111.00564 * 159.02474 * 7 4 3 29 29 H 1.09008 * 110.36753 * 81.85112 * 8 7 4 30 30 H 1.09001 * 110.37094 * 204.16995 * 8 7 4 31 31 H 0.97005 * 119.99622 * 180.02562 * 13 12 10 32 32 H 1.08998 * 109.88206 * 239.55467 * 18 9 8 33 33 H 1.09007 * 109.88177 * 118.39340 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.0108 0.3621 1.1999 6 8 3.3861 -0.9229 1.1737 7 6 4.1972 2.5881 0.0013 8 6 4.1609 2.9508 -1.5043 9 7 4.4198 1.6791 -2.2047 10 6 4.9333 1.5545 -3.4680 11 1 5.0861 0.5741 -3.8945 12 6 5.2576 2.6882 -4.2005 13 7 5.0711 3.8829 -3.6808 14 14 5.9588 2.5181 -5.9235 15 1 6.0708 1.0791 -6.2725 16 1 5.0596 3.1943 -6.8928 17 1 7.3036 3.1457 -5.9748 18 6 4.0349 0.5677 -1.3227 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6886 1.8464 0.8900 23 1 1.6886 1.8464 -0.8899 24 1 5.0930 0.2409 1.1514 25 1 3.7439 0.8771 2.1226 26 1 3.6421 -1.4996 1.9065 27 1 3.6117 3.2960 0.5880 28 1 5.2231 2.5362 0.3660 29 1 3.1802 3.3409 -1.7770 30 1 4.9379 3.6785 -1.7381 31 1 5.2973 4.6752 -4.1928 32 1 4.8979 -0.0701 -1.1319 33 1 3.2369 -0.0134 -1.7852 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194411086.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:46 Heat of formation + Delta-G solvation = -66.718796 kcal Electronic energy + Delta-G solvation = -15440.758998 eV Core-core repulsion = 12888.689693 eV Total energy + Delta-G solvation = -2552.069305 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.84851 -36.51728 -35.74775 -32.82549 -30.12346 -28.37020 -26.74884 -25.35435 -24.79916 -22.98683 -20.18665 -18.53823 -17.08104 -16.44821 -15.91634 -15.36503 -15.21126 -14.60264 -13.83091 -13.74138 -13.35434 -12.87638 -12.34903 -11.98723 -11.64320 -11.37123 -11.26481 -10.92880 -10.80210 -10.72873 -10.23245 -10.03597 -9.83565 -9.73927 -9.51344 -9.40974 -9.08141 -8.58829 -6.74345 -5.59624 -2.99542 3.43614 3.49214 3.51953 4.18442 4.55293 4.66543 5.24082 5.41097 5.47031 5.56207 5.57774 5.66237 5.71729 5.77945 5.87899 5.89326 6.00636 6.13878 6.23301 6.42095 6.56623 6.69892 6.98822 7.06936 7.52901 7.66286 7.71461 7.89473 8.07118 8.41861 9.29246 9.90375 10.56217 11.45047 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.041230 B = 0.008424 C = 0.008181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.947162 B = 3323.098142 C = 3421.662144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.359 6.359 3 C 0.085 3.915 4 C -0.070 4.070 5 C 0.098 3.902 6 O -0.546 6.546 7 C -0.133 4.133 8 C 0.153 3.847 9 N -0.608 5.608 10 C -0.215 4.215 11 H 0.078 0.922 12 C -0.016 4.016 13 N -0.925 5.925 14 Si 0.914 3.086 15 H -0.280 1.280 16 H -0.291 1.291 17 H -0.291 1.291 18 C 0.157 3.843 19 H 0.030 0.970 20 H 0.034 0.966 21 H 0.078 0.922 22 H 0.036 0.964 23 H 0.052 0.948 24 H 0.042 0.958 25 H 0.035 0.965 26 H 0.361 0.639 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.011 0.989 30 H 0.108 0.892 31 H 0.250 0.750 32 H 0.022 0.978 33 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.912 -4.575 10.510 12.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.009 3.991 4 C -0.071 4.071 5 C 0.019 3.981 6 O -0.348 6.348 7 C -0.171 4.171 8 C 0.028 3.972 9 N -0.334 5.334 10 C -0.343 4.343 11 H 0.095 0.905 12 C -0.210 4.210 13 N -0.575 5.575 14 Si 0.745 3.255 15 H -0.205 1.205 16 H -0.219 1.219 17 H -0.218 1.218 18 C 0.031 3.969 19 H 0.049 0.951 20 H 0.052 0.948 21 H 0.097 0.903 22 H 0.054 0.946 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.205 0.795 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.029 0.971 30 H 0.125 0.875 31 H 0.061 0.939 32 H 0.040 0.960 33 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.002 -4.377 9.770 11.816 hybrid contribution 0.303 0.035 -0.339 0.456 sum -4.699 -4.341 9.431 11.396 Atomic orbital electron populations 1.22648 0.83058 1.01830 0.99066 1.88116 1.17489 1.27051 1.95054 1.22337 0.92841 0.84697 0.99272 1.21660 0.93339 0.96312 0.95749 1.22071 0.95309 0.84241 0.96437 1.86792 1.70712 1.25795 1.51504 1.23057 0.99338 0.93205 1.01540 1.21930 1.00503 0.90311 0.84420 1.44594 1.74331 1.00606 1.13855 1.19161 1.33082 0.92986 0.89092 0.90454 1.24773 1.02209 0.95219 0.98832 1.69796 1.54693 0.96684 1.36328 0.85993 0.78322 0.77239 0.83975 1.20545 1.21860 1.21827 1.21184 0.96452 0.90913 0.88337 0.95110 0.94754 0.90318 0.94596 0.92957 0.93979 0.94684 0.79507 0.92125 0.91431 0.97115 0.87462 0.93906 0.95985 0.95045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.36 -6.51 8.09 -57.70 -0.47 -6.97 16 3 C 0.09 1.54 4.72 37.16 0.18 1.72 16 4 C -0.07 -1.33 0.61 -152.68 -0.09 -1.42 16 5 C 0.10 1.55 5.88 37.16 0.22 1.76 16 6 O -0.55 -8.59 11.36 -57.70 -0.66 -9.24 16 7 C -0.13 -2.56 6.02 -24.58 -0.15 -2.70 16 8 C 0.15 3.80 5.58 -2.50 -0.01 3.79 16 9 N -0.61 -16.32 3.40 -170.04 -0.58 -16.89 16 10 C -0.21 -6.22 10.27 -15.06 -0.15 -6.38 16 11 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 12 C -0.02 -0.45 5.49 -17.43 -0.10 -0.55 16 13 N -0.93 -27.43 10.09 55.49 0.56 -26.87 16 14 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 17 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 18 C 0.16 3.64 6.22 -3.07 -0.02 3.62 16 19 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 20 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 22 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 1.04 7.58 -51.93 -0.39 0.64 16 24 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.36 3.79 9.12 45.56 0.42 4.21 16 27 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 28 H 0.07 1.26 8.05 -51.93 -0.42 0.84 16 29 H 0.01 0.28 7.81 -51.92 -0.41 -0.12 16 30 H 0.11 2.96 5.88 -51.93 -0.31 2.66 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.02 0.52 7.78 -51.93 -0.40 0.12 16 33 H 0.03 0.78 7.50 -51.93 -0.39 0.39 16 LS Contribution 266.27 15.07 4.01 4.01 Total: -1.00 -32.52 266.27 -5.57 -38.09 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -4.40 Total: -1.11 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 0.98 Total: 1.39 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: -0.02 Total: -43.77 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -1.12 Total: -16.22 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.52 -5.57 -38.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194411086.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.632 kcal (2) G-P(sol) polarization free energy of solvation -32.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds