Wall clock time and date at job start Mon Mar 30 2020 20:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42906 * 113.99851 * 2 1 4 4 C 1.53004 * 109.47046 * 179.97438 * 3 2 1 5 5 C 1.52999 * 110.63961 * 303.14033 * 4 3 2 6 6 O 1.42902 * 109.47003 * 56.86128 * 5 4 3 7 7 C 1.55156 * 110.71804 * 180.02562 * 4 3 2 8 8 C 1.54906 * 101.61451 * 277.11632 * 7 4 3 9 9 N 1.47471 * 104.81210 * 323.04512 * 8 7 4 10 10 C 1.36936 * 125.62644 * 204.04433 * 9 8 7 11 11 H 1.08001 * 119.99967 * 180.02562 * 10 9 8 12 12 C 1.38816 * 120.00461 * 0.03195 * 10 9 8 13 13 N 1.31616 * 119.99418 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00126 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47127 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47089 * 119.99521 * 14 12 10 17 17 H 1.48496 * 109.46839 * 239.99358 * 14 12 10 18 18 C 1.47017 * 108.71970 * 24.07007 * 9 8 7 19 19 H 1.08998 * 109.47021 * 300.00087 * 1 2 3 20 20 H 1.09004 * 109.47136 * 59.99967 * 1 2 3 21 21 H 1.09004 * 109.46968 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46862 * 60.00193 * 3 2 1 23 23 H 1.08993 * 109.47196 * 299.99831 * 3 2 1 24 24 H 1.09006 * 109.47368 * 176.85839 * 5 4 3 25 25 H 1.08995 * 109.47470 * 296.85925 * 5 4 3 26 26 H 0.96702 * 113.99500 * 179.97438 * 6 5 4 27 27 H 1.09002 * 111.00677 * 35.21216 * 7 4 3 28 28 H 1.09002 * 111.00564 * 159.02474 * 7 4 3 29 29 H 1.09008 * 110.36753 * 81.85112 * 8 7 4 30 30 H 1.09001 * 110.37094 * 204.16995 * 8 7 4 31 31 H 0.97005 * 119.99622 * 180.02562 * 13 12 10 32 32 H 1.08998 * 109.88206 * 239.55467 * 18 9 8 33 33 H 1.09007 * 109.88177 * 118.39340 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.0108 0.3621 1.1999 6 8 3.3861 -0.9229 1.1737 7 6 4.1972 2.5881 0.0013 8 6 4.1609 2.9508 -1.5043 9 7 4.4198 1.6791 -2.2047 10 6 4.9333 1.5545 -3.4680 11 1 5.0861 0.5741 -3.8945 12 6 5.2576 2.6882 -4.2005 13 7 5.0711 3.8829 -3.6808 14 14 5.9588 2.5181 -5.9235 15 1 6.0708 1.0791 -6.2725 16 1 5.0596 3.1943 -6.8928 17 1 7.3036 3.1457 -5.9748 18 6 4.0349 0.5677 -1.3227 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6886 1.8464 0.8900 23 1 1.6886 1.8464 -0.8899 24 1 5.0930 0.2409 1.1514 25 1 3.7439 0.8771 2.1226 26 1 3.6421 -1.4996 1.9065 27 1 3.6117 3.2960 0.5880 28 1 5.2231 2.5362 0.3660 29 1 3.1802 3.3409 -1.7770 30 1 4.9379 3.6785 -1.7381 31 1 5.2973 4.6752 -4.1928 32 1 4.8979 -0.0701 -1.1319 33 1 3.2369 -0.0134 -1.7852 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194411086.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:46 Heat of formation + Delta-G solvation = -90.571508 kcal Electronic energy + Delta-G solvation = -15441.793329 eV Core-core repulsion = 12888.689693 eV Total energy + Delta-G solvation = -2553.103636 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.39048 -37.95844 -37.10487 -34.74592 -32.05803 -30.10007 -28.02902 -27.28515 -26.08588 -24.71955 -22.12729 -20.08635 -18.89916 -17.91464 -17.34598 -16.74475 -16.68960 -16.52867 -15.60848 -14.98132 -14.96301 -14.41906 -14.09546 -13.55947 -13.35235 -13.13966 -12.91907 -12.63500 -12.53408 -12.24740 -11.98911 -11.82487 -11.71499 -11.37905 -11.28302 -10.76247 -10.63455 -10.40016 -8.88702 -7.78712 -5.22489 1.45151 1.46350 1.57165 2.48785 2.89524 3.28556 3.45557 3.71560 3.87467 4.05614 4.16748 4.39271 4.45162 4.52722 4.60081 4.64938 4.66659 4.71269 4.81310 4.87238 4.96048 5.15105 5.17601 5.34732 5.44610 5.61969 5.79984 6.30299 6.41423 7.10908 7.16978 7.77653 8.42235 9.23585 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.041230 B = 0.008424 C = 0.008181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.947162 B = 3323.098142 C = 3421.662144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.381 6.381 3 C 0.090 3.910 4 C -0.066 4.066 5 C 0.105 3.895 6 O -0.566 6.566 7 C -0.115 4.115 8 C 0.155 3.845 9 N -0.628 5.628 10 C -0.241 4.241 11 H 0.074 0.926 12 C -0.066 4.066 13 N -0.948 5.948 14 Si 0.982 3.018 15 H -0.270 1.270 16 H -0.291 1.291 17 H -0.286 1.286 18 C 0.158 3.842 19 H 0.053 0.947 20 H 0.029 0.971 21 H 0.095 0.905 22 H 0.067 0.933 23 H 0.022 0.978 24 H 0.045 0.955 25 H 0.068 0.932 26 H 0.385 0.615 27 H 0.094 0.906 28 H 0.077 0.923 29 H -0.014 1.014 30 H 0.077 0.923 31 H 0.248 0.752 32 H 0.017 0.983 33 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.088 -5.056 11.993 13.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.299 6.299 3 C 0.013 3.987 4 C -0.067 4.067 5 C 0.027 3.973 6 O -0.372 6.372 7 C -0.154 4.154 8 C 0.030 3.970 9 N -0.354 5.354 10 C -0.370 4.370 11 H 0.092 0.908 12 C -0.259 4.259 13 N -0.598 5.598 14 Si 0.810 3.190 15 H -0.195 1.195 16 H -0.218 1.218 17 H -0.213 1.213 18 C 0.033 3.967 19 H 0.071 0.929 20 H 0.048 0.952 21 H 0.114 0.886 22 H 0.085 0.915 23 H 0.041 0.959 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.233 0.767 27 H 0.112 0.888 28 H 0.096 0.904 29 H 0.004 0.996 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.035 0.965 33 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -5.184 -4.885 11.287 13.346 hybrid contribution 0.297 0.137 -0.811 0.875 sum -4.887 -4.748 10.476 12.496 Atomic orbital electron populations 1.22857 0.81054 1.03292 0.99912 1.88075 1.19741 1.26924 1.95196 1.22243 0.92218 0.84960 0.99267 1.21644 0.94102 0.96147 0.94786 1.21942 0.95293 0.84336 0.95747 1.86726 1.70981 1.26174 1.53304 1.22889 1.00801 0.94177 0.97503 1.21747 0.97873 0.89132 0.88272 1.44908 1.74202 1.02388 1.13935 1.19471 1.33739 0.93112 0.90645 0.90849 1.25625 1.02645 0.94913 1.02691 1.70041 1.55125 0.97105 1.37481 0.84962 0.77388 0.77592 0.79098 1.19494 1.21783 1.21316 1.21230 0.95359 0.90071 0.90063 0.92863 0.95237 0.88638 0.91507 0.95936 0.93661 0.91400 0.76748 0.88756 0.90395 0.99584 0.90540 0.94207 0.96544 0.97439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 11.01 113.37 1.25 1.91 16 2 O -0.38 -13.19 8.09 -127.50 -1.03 -14.22 16 3 C 0.09 3.11 4.72 71.98 0.34 3.45 16 4 C -0.07 -2.41 0.61 -51.00 -0.03 -2.44 16 5 C 0.11 2.98 5.88 71.98 0.42 3.40 16 6 O -0.57 -16.21 11.36 -127.50 -1.45 -17.65 16 7 C -0.12 -4.25 6.02 31.98 0.19 -4.06 16 8 C 0.15 7.82 5.58 86.85 0.48 8.30 16 9 N -0.63 -34.60 3.40 -691.88 -2.35 -36.95 16 10 C -0.24 -14.31 10.27 84.03 0.86 -13.45 16 11 H 0.07 4.28 7.83 -2.91 -0.02 4.25 16 12 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 13 N -0.95 -57.49 10.09 21.65 0.22 -57.27 16 14 Si 0.98 47.10 29.55 68.60 2.03 49.13 16 15 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 16 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 17 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 18 C 0.16 7.41 6.22 86.73 0.54 7.95 16 19 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 20 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 21 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 22 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.02 0.90 7.58 -2.39 -0.02 0.88 16 24 H 0.05 1.26 8.07 -2.38 -0.02 1.24 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.38 6.81 9.12 -74.06 -0.68 6.13 16 27 H 0.09 2.85 8.04 -2.39 -0.02 2.83 16 28 H 0.08 2.72 8.05 -2.39 -0.02 2.70 16 29 H -0.01 -0.75 7.81 -2.38 -0.02 -0.77 16 30 H 0.08 4.35 5.88 -2.39 -0.01 4.33 16 31 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 32 H 0.02 0.78 7.78 -2.39 -0.02 0.76 16 33 H 0.01 0.39 7.50 -2.38 -0.02 0.37 16 Total: -1.00 -71.49 266.27 2.35 -69.14 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: 0.41 Total: 6.18 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 4.53 Total: 1.64 kcal Atomic # 7 Polarization: -92.08 SS G_CDS: -2.13 Total: -94.21 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -2.48 Total: -31.87 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -71.49 2.35 -69.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194411086.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.433 kcal (2) G-P(sol) polarization free energy of solvation -71.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds