Wall clock time and date at job start Mon Mar 30 2020 20:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35020 * 126.39828 * 2 1 4 4 N 1.30528 * 108.72548 * 179.97438 * 3 2 1 5 5 C 1.34158 * 109.27342 * 359.97438 * 4 3 2 6 6 Cl 1.73601 * 125.99465 * 179.97438 * 5 4 3 7 7 C 1.34753 * 108.00674 * 359.75735 * 5 4 3 8 8 C 1.50701 * 126.60662 * 180.25378 * 7 5 4 9 9 H 1.08996 * 109.47313 * 165.15123 * 8 7 5 10 10 O 1.42904 * 109.46600 * 45.15292 * 8 7 5 11 11 C 1.50699 * 109.47472 * 285.15811 * 8 7 5 12 12 H 1.08009 * 119.99715 * 359.97438 * 11 8 7 13 13 C 1.37870 * 120.00140 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99865 * 359.97438 * 13 11 8 15 15 Si 1.86804 * 119.99998 * 179.97438 * 13 11 8 16 16 H 1.48506 * 109.46855 * 90.00254 * 15 13 11 17 17 H 1.48504 * 109.47014 * 210.00027 * 15 13 11 18 18 H 1.48489 * 109.47375 * 330.00212 * 15 13 11 19 19 H 1.09002 * 109.47391 * 90.02137 * 1 2 3 20 20 H 1.09001 * 109.46813 * 330.02193 * 1 2 3 21 21 H 1.09004 * 109.47041 * 210.02320 * 1 2 3 22 22 H 1.07995 * 125.64064 * 359.97438 * 3 2 1 23 23 H 0.96697 * 114.00235 * 300.00186 * 10 8 7 24 24 H 0.97009 * 119.99810 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2662 1.0868 0.0000 4 7 3.5099 0.6905 0.0006 5 6 3.5473 -0.6505 0.0015 6 17 4.9798 -1.6312 0.0019 7 6 2.2780 -1.1027 0.0069 8 6 1.8374 -2.5439 0.0152 9 1 0.7819 -2.5996 0.2815 10 8 2.6092 -3.2723 0.9722 11 6 2.0423 -3.1398 -1.3537 12 1 2.4504 -2.5352 -2.1502 13 6 1.7089 -4.4566 -1.5893 14 7 1.2125 -5.1929 -0.6192 15 14 1.9623 -5.1951 -3.2863 16 1 3.3231 -5.7834 -3.3720 17 1 0.9490 -6.2550 -3.5213 18 1 1.8162 -4.1340 -4.3148 19 1 -0.3634 -0.0004 -1.0277 20 1 -0.3633 0.8902 0.5135 21 1 -0.3633 -0.8898 0.5142 22 1 1.9332 2.1141 -0.0004 23 1 3.5603 -3.2656 0.7976 24 1 0.9782 -6.1196 -0.7848 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536191007.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:50 Heat of formation + Delta-G solvation = -18.336908 kcal Electronic energy + Delta-G solvation = -12691.218392 eV Core-core repulsion = 10244.864148 eV Total energy + Delta-G solvation = -2446.354244 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 216.041 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.04648 -37.83044 -37.30140 -34.83215 -34.31499 -31.32146 -28.33417 -27.72980 -24.90414 -22.36411 -21.16326 -19.17442 -18.28264 -16.73580 -16.63689 -16.42883 -15.97959 -15.21228 -14.79680 -14.41595 -14.11565 -13.71791 -13.26977 -13.02360 -12.83241 -12.52392 -12.20083 -12.13250 -11.66194 -10.88440 -10.81402 -10.53568 -10.37594 -9.20259 -8.17110 -6.42990 1.01172 1.07258 1.39963 1.42723 1.51997 1.97578 2.08294 2.39665 3.08782 3.84417 4.00808 4.04908 4.21535 4.40650 4.48585 4.74698 5.00708 5.33456 5.53287 5.65750 5.95220 6.28469 6.62494 6.90473 7.20101 7.38006 8.86428 Molecular weight = 216.04amu Principal moments of inertia in cm(-1) A = 0.030381 B = 0.012534 C = 0.010684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.395866 B = 2233.431955 C = 2620.178286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.454 5.454 3 C 0.199 3.801 4 N -0.522 5.522 5 C 0.016 3.984 6 Cl -0.022 7.022 7 C -0.006 4.006 8 C 0.299 3.701 9 H 0.050 0.950 10 O -0.573 6.573 11 C -0.565 4.565 12 H 0.049 0.951 13 C 0.036 3.964 14 N -0.893 5.893 15 Si 0.957 3.043 16 H -0.276 1.276 17 H -0.276 1.276 18 H -0.268 1.268 19 H 0.088 0.912 20 H 0.133 0.867 21 H 0.074 0.926 22 H 0.264 0.736 23 H 0.356 0.644 24 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.165 9.958 0.014 10.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.138 5.138 3 C -0.083 4.083 4 N -0.243 5.243 5 C -0.137 4.137 6 Cl 0.006 6.994 7 C -0.125 4.125 8 C 0.240 3.760 9 H 0.067 0.933 10 O -0.379 6.379 11 C -0.603 4.603 12 H 0.068 0.932 13 C -0.167 4.167 14 N -0.529 5.529 15 Si 0.781 3.219 16 H -0.201 1.201 17 H -0.202 1.202 18 H -0.192 1.192 19 H 0.107 0.893 20 H 0.151 0.849 21 H 0.093 0.907 22 H 0.279 0.721 23 H 0.205 0.795 24 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.182 10.099 0.339 10.338 hybrid contribution 0.244 -1.122 -0.995 1.519 sum -1.938 8.977 -0.656 9.207 Atomic orbital electron populations 1.22377 0.73617 1.06110 1.05052 1.45456 1.09393 1.05312 1.53638 1.25755 0.83510 0.95145 1.03937 1.69777 1.22394 1.09551 1.22604 1.20368 0.87049 0.90185 1.16074 1.98269 1.36946 1.66623 1.97601 1.22451 0.90410 0.92931 1.06687 1.17656 0.91107 0.78821 0.88436 0.93260 1.86513 1.21900 1.75842 1.53680 1.21565 1.45610 0.97093 0.95991 0.93223 1.25754 0.93376 0.97243 1.00368 1.70170 1.41196 1.08202 1.33370 0.85599 0.78180 0.78251 0.79859 1.20114 1.20154 1.19220 0.89331 0.84895 0.90684 0.72060 0.79529 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.60 10.98 127.77 1.40 3.00 14 2 N -0.45 -15.16 3.15 -537.71 -1.70 -16.86 14 3 C 0.20 5.90 12.56 180.26 2.26 8.17 14 4 N -0.52 -20.35 11.25 -191.23 -2.15 -22.50 14 5 C 0.02 0.70 7.62 83.54 0.64 1.34 14 6 Cl -0.02 -0.93 26.65 -2.72 -0.07 -1.01 14 7 C -0.01 -0.27 5.88 40.95 0.24 -0.03 14 8 C 0.30 15.32 3.12 29.10 0.09 15.42 14 9 H 0.05 2.64 6.91 -2.39 -0.02 2.63 14 10 O -0.57 -31.22 12.68 -148.98 -1.89 -33.11 14 11 C -0.56 -30.75 8.75 25.60 0.22 -30.52 14 12 H 0.05 2.75 7.74 -2.91 -0.02 2.73 14 13 C 0.04 1.97 5.40 84.65 0.46 2.43 14 14 N -0.89 -51.41 12.84 21.44 0.28 -51.13 14 15 Si 0.96 42.84 29.54 68.60 2.03 44.87 14 16 H -0.28 -12.23 7.11 99.48 0.71 -11.52 14 17 H -0.28 -11.92 7.11 99.48 0.71 -11.22 14 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 14 19 H 0.09 1.89 8.14 -2.39 -0.02 1.87 14 20 H 0.13 1.73 8.14 -2.39 -0.02 1.71 14 21 H 0.07 2.00 7.05 -2.38 -0.02 1.98 14 22 H 0.26 4.29 8.06 -2.91 -0.02 4.26 14 23 H 0.36 18.30 6.19 -74.06 -0.46 17.84 14 24 H 0.27 14.41 8.31 -92.70 -0.77 13.64 14 Total: -1.00 -69.57 232.27 2.58 -66.99 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.77 Total: 12.96 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 5.32 Total: -0.21 kcal Atomic # 7 Polarization: -86.92 SS G_CDS: -3.57 Total: -90.49 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -1.89 Total: -33.11 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.07 Total: -1.01 kcal Total: -69.57 2.58 -66.99 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536191007.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.651 kcal (2) G-P(sol) polarization free energy of solvation -69.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds