Wall clock time and date at job start Mon Mar 30 2020 20:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31438 * 1 3 3 Si 1.86801 * 119.99955 * 2 1 4 4 H 1.48504 * 109.46932 * 269.99623 * 3 2 1 5 5 H 1.48497 * 109.47180 * 29.99778 * 3 2 1 6 6 H 1.48501 * 109.47184 * 149.99611 * 3 2 1 7 7 C 1.38858 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00123 * 169.15568 * 7 2 1 9 9 N 1.37205 * 119.99372 * 349.15895 * 7 2 1 10 10 C 1.36996 * 125.09557 * 338.95745 * 9 7 2 11 11 C 1.34302 * 109.93771 * 180.02562 * 10 9 7 12 12 C 1.50696 * 126.47977 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.47228 * 260.02448 * 12 11 10 14 14 C 1.46668 * 107.04671 * 0.24225 * 11 10 9 15 15 C 1.39514 * 133.97030 * 179.75644 * 14 11 10 16 16 C 1.37780 * 119.65706 * 179.97438 * 15 14 11 17 17 C 1.38755 * 120.36302 * 359.97438 * 16 15 14 18 18 C 1.37902 * 120.64778 * 359.66805 * 17 16 15 19 19 C 1.38116 * 125.08559 * 159.01073 * 9 7 2 20 20 H 0.96995 * 120.00111 * 0.02562 * 1 2 3 21 21 H 1.08003 * 125.03373 * 0.02562 * 10 9 7 22 22 H 1.09000 * 109.46998 * 20.02524 * 12 11 10 23 23 H 1.09007 * 109.47172 * 140.02445 * 12 11 10 24 24 H 1.00902 * 111.00056 * 56.04777 * 13 12 11 25 25 H 1.00900 * 110.99989 * 179.97438 * 13 12 11 26 26 H 1.08000 * 120.17520 * 359.97438 * 15 14 11 27 27 H 1.08001 * 119.81983 * 179.97438 * 16 15 14 28 28 H 1.08000 * 119.67648 * 180.02562 * 17 16 15 29 29 H 1.07999 * 120.03951 * 179.88688 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4959 2.0464 -1.4001 5 1 1.4458 2.6527 0.7000 6 1 3.5459 1.4402 0.7001 7 6 2.0087 -1.2025 0.0005 8 1 3.0743 -1.2109 -0.1754 9 7 1.3410 -2.3800 0.2246 10 6 0.1254 -2.4901 0.8466 11 6 -0.2444 -3.7799 0.9041 12 6 -1.5136 -4.3219 1.5094 13 7 -1.2306 -4.8471 2.8517 14 6 0.8234 -4.5620 0.2724 15 6 1.0173 -5.9233 0.0366 16 6 2.1625 -6.3486 -0.6005 17 6 3.1205 -5.4311 -1.0076 18 6 2.9396 -4.0817 -0.7881 19 6 1.7944 -3.6320 -0.1424 20 1 -0.4850 0.8400 -0.0004 21 1 -0.4504 -1.6622 1.2334 22 1 -2.2523 -3.5235 1.5800 23 1 -1.9030 -5.1226 0.8806 24 1 -0.8085 -4.1402 3.4351 25 1 -2.0667 -5.2163 3.2793 26 1 0.2735 -6.6402 0.3517 27 1 2.3155 -7.4018 -0.7840 28 1 4.0139 -5.7766 -1.5065 29 1 3.6925 -3.3763 -1.1075 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082635708.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:03 Heat of formation + Delta-G solvation = 51.625509 kcal Electronic energy + Delta-G solvation = -13930.727677 eV Core-core repulsion = 11625.673175 eV Total energy + Delta-G solvation = -2305.054502 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.01823 -36.02338 -34.43630 -32.80592 -30.58451 -28.62433 -27.72473 -25.48221 -23.19145 -21.49328 -20.44589 -18.72869 -17.56385 -15.67496 -15.50227 -14.84705 -14.43076 -14.24974 -13.75846 -13.23464 -13.01069 -12.84654 -12.24999 -11.84755 -11.50615 -11.34394 -11.18394 -10.83520 -10.56912 -10.54669 -10.20176 -9.74135 -9.19109 -8.46741 -8.08524 -7.06162 -6.86276 -6.51410 -4.29213 2.26404 2.69560 2.99747 3.01940 3.06843 3.79523 3.97252 4.71976 4.84848 5.11983 5.42935 5.84446 5.89240 5.91782 6.09315 6.21252 6.44036 6.52180 6.58999 6.94596 6.97959 7.13193 7.15349 7.24092 7.53105 7.60267 7.64633 7.78245 8.01174 8.08116 8.22387 8.46296 9.00449 9.43786 10.27411 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.027590 B = 0.011147 C = 0.008252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.630986 B = 2511.281965 C = 3392.341683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.041 3.959 3 Si 0.939 3.061 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.339 4.339 8 H 0.105 0.895 9 N -0.291 5.291 10 C 0.096 3.904 11 C -0.256 4.256 12 C 0.156 3.844 13 N -0.847 5.847 14 C -0.093 4.093 15 C -0.076 4.076 16 C -0.175 4.175 17 C -0.138 4.138 18 C -0.111 4.111 19 C 0.051 3.949 20 H 0.278 0.722 21 H 0.168 0.832 22 H 0.020 0.980 23 H 0.062 0.938 24 H 0.338 0.662 25 H 0.325 0.675 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.262 -3.349 1.802 3.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.167 4.167 3 Si 0.763 3.237 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.466 4.466 8 H 0.123 0.877 9 N 0.046 4.954 10 C -0.041 4.041 11 C -0.263 4.263 12 C 0.026 3.974 13 N -0.376 5.376 14 C -0.099 4.099 15 C -0.094 4.094 16 C -0.194 4.194 17 C -0.158 4.158 18 C -0.131 4.131 19 C -0.060 4.060 20 H 0.089 0.911 21 H 0.185 0.815 22 H 0.039 0.961 23 H 0.080 0.920 24 H 0.150 0.850 25 H 0.136 0.864 26 H 0.122 0.878 27 H 0.120 0.880 28 H 0.123 0.877 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.212 -3.342 1.355 3.613 hybrid contribution -0.302 1.646 0.183 1.683 sum -0.090 -1.697 1.538 2.292 Atomic orbital electron populations 1.69889 1.06249 1.28747 1.43843 1.25483 0.95715 1.00489 0.94968 0.85735 0.79387 0.79597 0.78959 1.19703 1.20134 1.18880 1.19828 0.93904 0.82213 1.50671 0.87748 1.40140 1.14430 1.03440 1.37357 1.21875 0.88415 0.96336 0.97441 1.19656 0.99009 0.92072 1.15549 1.19687 0.92864 0.96135 0.88735 1.58846 1.31997 1.41859 1.04897 1.18792 0.95103 0.92253 1.03746 1.20248 0.96835 0.93600 0.98764 1.20503 0.96024 0.97920 1.04996 1.20421 0.99242 0.92305 1.03848 1.19852 0.96133 0.95118 1.02043 1.18421 0.97431 0.85766 1.04380 0.91102 0.81546 0.96137 0.91990 0.85025 0.86384 0.87753 0.87959 0.87707 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.05 10.85 55.49 0.60 -21.45 15 2 C 0.04 1.03 5.35 -17.49 -0.09 0.94 15 3 Si 0.94 19.04 29.57 -169.99 -5.03 14.01 15 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 15 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 15 6 H -0.26 -5.28 7.11 56.52 0.40 -4.87 15 7 C -0.34 -8.93 9.93 -14.92 -0.15 -9.08 15 8 H 0.10 2.63 7.85 -52.49 -0.41 2.22 15 9 N -0.29 -7.76 2.92 -59.73 -0.17 -7.93 15 10 C 0.10 2.43 9.81 -16.63 -0.16 2.26 15 11 C -0.26 -5.95 5.83 -102.61 -0.60 -6.55 15 12 C 0.16 2.95 7.31 -4.98 -0.04 2.91 15 13 N -0.85 -14.09 9.61 -11.41 -0.11 -14.20 15 14 C -0.09 -2.24 6.35 -105.09 -0.67 -2.91 15 15 C -0.08 -1.62 10.10 -39.27 -0.40 -2.01 15 16 C -0.17 -3.42 10.03 -39.56 -0.40 -3.82 15 17 C -0.14 -2.75 10.02 -39.51 -0.40 -3.15 15 18 C -0.11 -2.52 9.95 -39.44 -0.39 -2.91 15 19 C 0.05 1.29 6.75 -83.84 -0.57 0.72 15 20 H 0.28 6.64 8.31 -40.82 -0.34 6.30 15 21 H 0.17 4.26 6.34 -52.48 -0.33 3.92 15 22 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 15 23 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 24 H 0.34 5.57 8.99 -39.29 -0.35 5.22 15 25 H 0.33 4.34 9.08 -39.29 -0.36 3.98 15 26 H 0.10 2.03 8.06 -52.49 -0.42 1.60 15 27 H 0.10 1.68 8.06 -52.49 -0.42 1.26 15 28 H 0.10 1.74 8.06 -52.49 -0.42 1.32 15 29 H 0.10 2.21 8.06 -52.49 -0.42 1.79 15 LS Contribution 254.77 15.07 3.84 3.84 Total: -1.00 -28.24 254.77 -7.85 -36.08 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -3.13 Total: 13.24 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -3.85 Total: -23.60 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.32 Total: -43.58 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.24 -7.85 -36.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082635708.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.710 kcal (2) G-P(sol) polarization free energy of solvation -28.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds