Wall clock time and date at job start Mon Mar 30 2020 20:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86793 * 120.00030 * 2 1 4 4 H 1.48499 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47325 * 299.99739 * 3 2 1 6 6 H 1.48495 * 109.47509 * 59.99792 * 3 2 1 7 7 C 1.40153 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99204 * 195.00829 * 7 2 1 9 9 C 1.40451 * 120.00300 * 15.00480 * 7 2 1 10 10 C 1.40541 * 120.71369 * 25.42534 * 9 7 2 11 11 C 1.38143 * 120.43047 * 180.25093 * 10 9 7 12 12 C 1.37677 * 121.79447 * 359.42505 * 11 10 9 13 13 C 1.40647 * 120.78199 * 0.27498 * 12 11 10 14 14 C 1.40495 * 121.21573 * 180.02562 * 13 12 11 15 15 C 1.36578 * 119.60709 * 179.97438 * 14 13 12 16 16 F 1.35106 * 119.56152 * 180.02562 * 15 14 13 17 17 C 1.39281 * 120.87773 * 0.02562 * 15 14 13 18 18 C 1.36653 * 120.82875 * 0.02565 * 17 15 14 19 19 C 1.39534 * 119.70499 * 359.97176 * 18 17 15 20 20 H 0.97001 * 120.00120 * 0.02562 * 1 2 3 21 21 H 1.08003 * 119.78254 * 359.95077 * 10 9 7 22 22 H 1.08000 * 119.10551 * 179.70324 * 11 10 9 23 23 H 1.07999 * 119.61448 * 180.25507 * 12 11 10 24 24 H 1.08000 * 120.19115 * 359.97438 * 14 13 12 25 25 H 1.07993 * 119.58734 * 179.97438 * 17 15 14 26 26 H 1.07999 * 120.14449 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7013 1.3463 0.0006 5 1 1.8827 2.3964 -1.2126 6 1 1.8826 2.3964 1.2124 7 6 2.0081 -1.2138 -0.0005 8 1 3.0605 -1.2298 0.2417 9 6 1.3417 -2.4093 -0.3160 10 6 0.1886 -2.3979 -1.1193 11 6 -0.4652 -3.5767 -1.4216 12 6 -0.0136 -4.7944 -0.9648 13 6 1.1378 -4.8798 -0.1615 14 6 1.6070 -6.1177 0.3093 15 6 2.7289 -6.1626 1.0868 16 9 3.1796 -7.3534 1.5386 17 6 3.4146 -4.9970 1.4203 18 6 2.9814 -3.7788 0.9780 19 6 1.8384 -3.6987 0.1817 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1917 -1.4609 -1.4986 22 1 -1.3522 -3.5426 -2.0368 23 1 -0.5498 -5.6947 -1.2260 24 1 1.0835 -7.0282 0.0577 25 1 4.2992 -5.0567 2.0368 26 1 3.5214 -2.8819 1.2436 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238620249.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:02 Heat of formation + Delta-G solvation = -35.384219 kcal Electronic energy + Delta-G solvation = -13392.118805 eV Core-core repulsion = 10927.538222 eV Total energy + Delta-G solvation = -2464.580583 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.065 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.78542 -40.42714 -37.01710 -35.46241 -33.06572 -30.72084 -29.86118 -27.19331 -24.14881 -23.31195 -22.37659 -19.46676 -18.45481 -17.84111 -17.25057 -16.82365 -16.46671 -15.61747 -15.30720 -14.98538 -14.34831 -14.10494 -13.91144 -13.55091 -13.24951 -13.06877 -12.74620 -12.42369 -12.06561 -11.64577 -11.54609 -11.21634 -11.19993 -10.34512 -9.19146 -8.84606 -8.67143 -6.37726 -0.04707 0.40814 1.20808 1.40275 1.56292 1.62658 2.14293 2.30832 2.79867 3.46381 3.71232 3.97849 4.18258 4.39320 4.52956 4.61989 4.68135 4.90216 5.08446 5.16236 5.29408 5.41577 5.47280 5.57378 5.77115 5.97733 6.09209 6.21685 6.27719 6.58161 6.71859 6.88419 8.11901 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.038651 B = 0.009274 C = 0.007626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.265430 B = 3018.606987 C = 3670.671893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.032 3.968 3 Si 0.992 3.008 4 H -0.250 1.250 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.446 4.446 8 H 0.097 0.903 9 C 0.101 3.899 10 C -0.256 4.256 11 C -0.054 4.054 12 C -0.290 4.290 13 C 0.006 3.994 14 C -0.195 4.195 15 C 0.100 3.900 16 F -0.150 7.150 17 C -0.218 4.218 18 C -0.041 4.041 19 C -0.160 4.160 20 H 0.297 0.703 21 H 0.107 0.893 22 H 0.110 0.890 23 H 0.114 0.886 24 H 0.138 0.862 25 H 0.147 0.853 26 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.548 -0.816 0.756 3.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.188 4.188 3 Si 0.811 3.189 4 H -0.173 1.173 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.473 4.473 8 H 0.115 0.885 9 C 0.098 3.902 10 C -0.276 4.276 11 C -0.072 4.072 12 C -0.309 4.309 13 C 0.006 3.994 14 C -0.214 4.214 15 C 0.081 3.919 16 F -0.129 7.129 17 C -0.236 4.236 18 C -0.059 4.059 19 C -0.160 4.160 20 H 0.108 0.892 21 H 0.125 0.875 22 H 0.128 0.872 23 H 0.132 0.868 24 H 0.156 0.844 25 H 0.165 0.835 26 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.343 -0.710 0.793 3.509 hybrid contribution -0.095 0.353 -0.001 0.366 sum 3.248 -0.357 0.792 3.362 Atomic orbital electron populations 1.69845 1.09486 1.31633 1.30566 1.27041 0.95576 1.05122 0.91046 0.84988 0.79633 0.75089 0.79152 1.17329 1.18795 1.18793 1.20034 0.98099 0.91379 1.37748 0.88485 1.18981 0.91991 0.91057 0.88202 1.21108 1.02232 0.97111 1.07139 1.20812 0.97354 0.92697 0.96373 1.20500 1.01555 0.97287 1.11556 1.17795 0.94714 0.91566 0.95336 1.20913 0.98553 0.98328 1.03581 1.17421 0.95431 0.80671 0.98368 1.91417 1.88988 1.44731 1.87768 1.20708 1.03943 0.90895 1.08080 1.20856 0.93842 0.97493 0.93750 1.19545 0.99146 0.93680 1.03677 0.89157 0.87512 0.87225 0.86780 0.84394 0.83503 0.84440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.01 10.86 21.86 0.24 -37.77 15 2 C 0.03 1.44 5.20 85.32 0.44 1.88 15 3 Si 0.99 33.76 29.59 68.60 2.03 35.78 15 4 H -0.25 -8.20 7.11 99.48 0.71 -7.50 15 5 H -0.26 -8.71 7.11 99.48 0.71 -8.00 15 6 H -0.26 -8.62 7.11 99.48 0.71 -7.91 15 7 C -0.45 -21.71 8.51 23.27 0.20 -21.52 15 8 H 0.10 4.36 6.71 -2.91 -0.02 4.34 15 9 C 0.10 5.22 5.73 -19.92 -0.11 5.10 15 10 C -0.26 -13.19 8.69 22.81 0.20 -12.99 15 11 C -0.05 -2.52 9.92 22.11 0.22 -2.30 15 12 C -0.29 -13.12 9.77 22.73 0.22 -12.90 15 13 C 0.01 0.28 5.74 -21.32 -0.12 0.16 15 14 C -0.19 -7.95 9.74 22.43 0.22 -7.73 15 15 C 0.10 3.89 7.23 22.13 0.16 4.05 15 16 F -0.15 -5.39 17.24 44.97 0.78 -4.61 15 17 C -0.22 -8.16 9.94 22.15 0.22 -7.94 15 18 C -0.04 -1.73 9.41 22.21 0.21 -1.52 15 19 C -0.16 -7.74 5.90 -19.89 -0.12 -7.86 15 20 H 0.30 12.63 8.29 -92.71 -0.77 11.86 15 21 H 0.11 5.65 6.12 -2.91 -0.02 5.63 15 22 H 0.11 4.47 8.06 -2.91 -0.02 4.44 15 23 H 0.11 4.52 8.06 -2.91 -0.02 4.50 15 24 H 0.14 4.95 8.06 -2.91 -0.02 4.92 15 25 H 0.15 4.52 8.06 -2.91 -0.02 4.49 15 26 H 0.14 5.28 6.64 -2.91 -0.02 5.26 15 Total: -1.00 -54.11 234.80 5.98 -48.13 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 1.20 Total: 22.04 kcal Atomic # 6 Polarization: -65.30 SS G_CDS: 1.74 Total: -63.57 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.24 Total: -37.77 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.78 Total: -4.61 kcal Atomic # 14 Polarization: 33.76 SS G_CDS: 2.03 Total: 35.78 kcal Total: -54.11 5.98 -48.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238620249.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.749 kcal (2) G-P(sol) polarization free energy of solvation -54.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds