Wall clock time and date at job start Mon Mar 30 2020 20:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36641 * 120.05875 * 2 1 4 4 C 1.38728 * 120.67183 * 179.97438 * 3 2 1 5 5 C 1.37902 * 120.44753 * 0.02562 * 4 3 2 6 6 C 1.38785 * 119.69116 * 359.97438 * 5 4 3 7 7 C 1.39703 * 120.05501 * 179.97438 * 2 1 3 8 8 N 1.35790 * 133.60698 * 0.05263 * 7 2 1 9 9 C 1.30106 * 109.64087 * 179.73585 * 8 7 2 10 10 N 1.36032 * 110.11382 * 0.39116 * 9 8 7 11 11 C 1.46496 * 126.35061 * 179.87932 * 10 9 8 12 12 C 1.50706 * 109.47106 * 264.68493 * 11 10 9 13 13 H 1.07999 * 119.99515 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00176 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99883 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00043 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47216 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 119.99848 * 16 14 12 19 19 H 1.48501 * 109.47057 * 239.99829 * 16 14 12 20 20 H 1.08997 * 109.47233 * 270.02271 * 1 2 3 21 21 H 1.09003 * 109.46745 * 30.02081 * 1 2 3 22 22 H 1.08997 * 109.46946 * 150.01955 * 1 2 3 23 23 H 1.08004 * 119.66347 * 0.02562 * 3 2 1 24 24 H 1.08001 * 119.77914 * 180.02562 * 4 3 2 25 25 H 1.08000 * 120.15537 * 179.97438 * 5 4 3 26 26 H 1.08009 * 124.93985 * 180.26989 * 9 8 7 27 27 H 1.09001 * 109.47001 * 144.68784 * 11 10 9 28 28 H 1.09000 * 109.47574 * 24.69000 * 11 10 9 29 29 H 0.97004 * 119.99507 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1915 1.1826 0.0000 4 6 3.5787 1.1975 0.0005 5 6 4.2902 0.0162 0.0005 6 6 3.6121 -1.1947 0.0006 7 6 2.2067 -1.2092 0.0005 8 7 1.8248 -2.5123 0.0002 9 6 2.8776 -3.2766 -0.0046 10 7 4.0066 -2.5178 0.0010 11 6 5.3854 -3.0126 0.0006 12 6 5.9005 -3.0657 1.4160 13 1 5.2642 -2.7615 2.2339 14 6 7.1840 -3.5023 1.6666 15 7 7.9590 -3.8722 0.6705 16 14 7.8221 -3.5687 3.4209 17 1 6.7627 -3.1024 4.3511 18 1 8.1982 -4.9651 3.7584 19 1 9.0132 -2.6909 3.5480 20 1 -0.3633 0.0004 1.0276 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3633 -0.8901 -0.5135 23 1 1.6469 2.1154 0.0004 24 1 4.1050 2.1406 0.0009 25 1 5.3700 0.0332 0.0005 26 1 2.8580 -4.3565 -0.0101 27 1 6.0116 -2.3431 -0.5890 28 1 5.4128 -4.0120 -0.4337 29 1 8.8619 -4.1798 0.8469 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095921965.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:47 Heat of formation + Delta-G solvation = 56.175403 kcal Electronic energy + Delta-G solvation = -13747.446025 eV Core-core repulsion = 11442.588822 eV Total energy + Delta-G solvation = -2304.857204 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.36292 -37.02645 -34.14237 -32.69212 -31.30793 -28.84102 -27.25056 -26.19233 -23.37171 -22.13519 -21.45004 -19.05090 -16.85134 -16.54822 -16.07058 -15.14198 -14.65153 -14.50081 -13.59450 -13.08695 -13.05249 -12.89449 -12.37640 -11.97869 -11.80009 -11.38630 -11.20708 -10.97087 -10.90711 -10.83515 -10.32780 -10.11554 -9.30127 -9.21024 -8.74495 -7.70560 -7.32030 -6.36547 -4.45767 1.54226 2.15168 3.13668 3.22054 3.27049 3.51706 3.71286 4.21794 4.41192 4.88512 4.97754 5.22807 5.37154 5.60959 5.70842 5.93600 5.97390 6.05159 6.10292 6.16105 6.34409 6.52790 6.85602 6.90161 7.01870 7.16861 7.35391 7.50290 7.56744 7.76132 8.00535 8.56549 8.63469 9.22804 10.70745 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.040781 B = 0.008035 C = 0.007509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.427673 B = 3483.743425 C = 3728.012493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.045 4.045 3 C -0.142 4.142 4 C -0.119 4.119 5 C -0.097 4.097 6 C 0.056 3.944 7 C 0.038 3.962 8 N -0.520 5.520 9 C 0.257 3.743 10 N -0.459 5.459 11 C 0.237 3.763 12 C -0.543 4.543 13 H 0.065 0.935 14 C 0.067 3.933 15 N -0.889 5.889 16 Si 0.906 3.094 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.280 1.280 20 H 0.063 0.937 21 H 0.058 0.942 22 H 0.068 0.932 23 H 0.118 0.882 24 H 0.121 0.879 25 H 0.122 0.878 26 H 0.205 0.795 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.576 5.915 -1.613 9.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.047 4.047 3 C -0.162 4.162 4 C -0.139 4.139 5 C -0.118 4.118 6 C -0.056 4.056 7 C -0.082 4.082 8 N -0.241 5.241 9 C -0.029 4.029 10 N -0.143 5.143 11 C 0.118 3.882 12 C -0.582 4.582 13 H 0.083 0.917 14 C -0.137 4.137 15 N -0.527 5.527 16 Si 0.732 3.268 17 H -0.195 1.195 18 H -0.205 1.205 19 H -0.206 1.206 20 H 0.082 0.918 21 H 0.077 0.923 22 H 0.087 0.913 23 H 0.136 0.864 24 H 0.139 0.861 25 H 0.140 0.860 26 H 0.221 0.779 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.044 5.476 -1.661 9.872 hybrid contribution 1.555 -0.012 0.965 1.830 sum -6.490 5.464 -0.695 8.512 Atomic orbital electron populations 1.20621 0.91447 1.02097 1.01758 1.18689 0.95375 0.89989 1.00607 1.20340 0.94086 0.96561 1.05254 1.20700 0.93846 0.96786 1.02608 1.20057 0.99714 0.89385 1.02631 1.18930 0.94716 0.86289 1.05709 1.18900 0.90338 0.92018 1.06962 1.70363 1.28896 1.00408 1.24421 1.25155 0.80411 0.98838 0.98499 1.46148 1.09907 1.03960 1.54331 1.19752 0.73147 0.96243 0.99063 1.21356 0.99035 1.46002 0.91765 0.91656 1.24942 0.96211 0.94329 0.98187 1.69930 1.08723 1.42830 1.31196 0.86303 0.78928 0.77989 0.83534 1.19498 1.20547 1.20563 0.91804 0.92296 0.91333 0.86384 0.86124 0.85982 0.77892 0.93544 0.92959 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.46 10.02 36.01 0.36 -1.09 15 2 C -0.04 -0.79 5.88 -104.65 -0.61 -1.40 15 3 C -0.14 -2.22 9.60 -39.98 -0.38 -2.61 15 4 C -0.12 -1.94 10.03 -39.52 -0.40 -2.34 15 5 C -0.10 -1.89 10.05 -39.50 -0.40 -2.29 15 6 C 0.06 1.22 6.87 -83.99 -0.58 0.64 15 7 C 0.04 0.79 6.90 -84.70 -0.58 0.21 15 8 N -0.52 -10.82 11.27 -12.05 -0.14 -10.95 15 9 C 0.26 5.15 12.49 -89.79 -1.12 4.02 15 10 N -0.46 -10.18 2.79 -117.08 -0.33 -10.50 15 11 C 0.24 5.71 5.91 -5.19 -0.03 5.68 15 12 C -0.54 -14.39 9.39 -34.44 -0.32 -14.71 15 13 H 0.07 1.80 7.81 -52.49 -0.41 1.39 15 14 C 0.07 1.78 5.46 -17.82 -0.10 1.68 15 15 N -0.89 -24.31 13.29 55.43 0.74 -23.57 15 16 Si 0.91 20.59 29.54 -169.99 -5.02 15.57 15 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 20 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 21 H 0.06 0.68 8.08 -51.93 -0.42 0.26 15 22 H 0.07 1.02 8.09 -51.93 -0.42 0.60 15 23 H 0.12 1.46 8.06 -52.48 -0.42 1.04 15 24 H 0.12 1.58 8.06 -52.49 -0.42 1.15 15 25 H 0.12 2.36 8.06 -52.49 -0.42 1.93 15 26 H 0.20 3.28 8.06 -52.48 -0.42 2.86 15 27 H 0.05 1.18 8.14 -51.93 -0.42 0.75 15 28 H 0.05 1.26 8.13 -51.93 -0.42 0.84 15 29 H 0.27 6.91 8.31 -40.82 -0.34 6.57 15 LS Contribution 259.75 15.07 3.91 3.91 Total: -1.00 -29.12 259.75 -8.34 -37.47 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -3.34 Total: 0.29 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -4.17 Total: -12.21 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.27 Total: -45.03 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.12 -8.34 -37.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095921965.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.641 kcal (2) G-P(sol) polarization free energy of solvation -29.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds