Wall clock time and date at job start Mon Mar 30 2020 20:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37983 * 119.72951 * 2 1 4 4 C 1.38217 * 119.77356 * 179.97438 * 3 2 1 5 5 C 1.37981 * 119.77152 * 359.87808 * 4 3 2 6 6 C 1.38867 * 120.54571 * 0.04108 * 5 4 3 7 7 C 1.37710 * 119.68128 * 0.17319 * 6 5 4 8 8 C 1.50628 * 122.56075 * 179.30823 * 7 6 5 9 9 C 1.52743 * 110.57933 * 17.80997 * 8 7 6 10 10 H 1.09006 * 109.70757 * 68.61700 * 9 8 7 11 11 C 1.50704 * 109.67916 * 189.14756 * 9 8 7 12 12 H 1.07996 * 119.99981 * 4.25694 * 11 9 8 13 13 C 1.37873 * 119.99607 * 183.97512 * 11 9 8 14 14 N 1.31518 * 120.00402 * 7.35191 * 13 11 9 15 15 Si 1.86801 * 119.99815 * 187.34312 * 13 11 9 16 16 H 1.48504 * 109.46834 * 94.75070 * 15 13 11 17 17 H 1.48503 * 109.47236 * 214.74343 * 15 13 11 18 18 H 1.48497 * 109.47303 * 334.74757 * 15 13 11 19 19 C 1.53320 * 108.38995 * 308.87491 * 9 8 7 20 20 C 1.50629 * 117.75875 * 180.23446 * 6 5 4 21 21 H 1.09005 * 109.46900 * 89.99965 * 1 2 3 22 22 H 1.08992 * 109.47355 * 209.99886 * 1 2 3 23 23 H 1.08995 * 109.47222 * 330.00525 * 1 2 3 24 24 H 1.07998 * 120.10878 * 359.95001 * 3 2 1 25 25 H 1.08003 * 120.11848 * 179.90489 * 4 3 2 26 26 H 1.08002 * 119.72937 * 180.02562 * 5 4 3 27 27 H 1.09000 * 109.26027 * 257.53145 * 8 7 6 28 28 H 1.08992 * 109.25226 * 138.09221 * 8 7 6 29 29 H 0.97002 * 120.00410 * 180.02562 * 14 13 11 30 30 H 1.08998 * 109.68063 * 189.60794 * 19 9 8 31 31 H 1.09006 * 109.68190 * 310.15506 * 19 9 8 32 32 H 1.08999 * 109.25571 * 77.44145 * 20 6 5 33 33 H 1.09001 * 109.22534 * 317.99009 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1912 1.1982 0.0000 4 6 3.5734 1.1993 0.0005 5 6 4.2594 0.0021 0.0036 6 6 3.5727 -1.2049 0.0053 7 6 2.1956 -1.2059 0.0003 8 6 1.3859 -2.4760 -0.0135 9 6 2.2438 -3.6643 0.4168 10 1 2.4942 -3.5732 1.4738 11 6 1.4879 -4.9469 0.1829 12 1 0.5201 -4.9238 -0.2957 13 6 2.0347 -6.1504 0.5748 14 7 3.1447 -6.1700 1.2799 15 14 1.1987 -7.7533 0.1044 16 1 1.8073 -8.2815 -1.1430 17 1 1.3740 -8.7426 1.1980 18 1 -0.2496 -7.5102 -0.1158 19 6 3.5283 -3.6618 -0.4203 20 6 4.3843 -2.4738 0.0141 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5137 24 1 1.6486 2.1320 -0.0008 25 1 4.1146 2.1339 -0.0010 26 1 5.3394 0.0037 0.0045 27 1 1.0090 -2.6511 -1.0212 28 1 0.5445 -2.3733 0.6716 29 1 3.5296 -7.0167 1.5553 30 1 4.0763 -4.5893 -0.2544 31 1 3.2778 -3.5669 -1.4769 32 1 4.7619 -2.6520 1.0210 33 1 5.2250 -2.3669 -0.6713 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108370616.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:13 Heat of formation + Delta-G solvation = -19.315495 kcal Electronic energy + Delta-G solvation = -14278.605416 eV Core-core repulsion = 12074.015025 eV Total energy + Delta-G solvation = -2204.590391 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.92413 -37.29220 -34.66850 -34.17895 -31.02604 -30.45499 -27.72413 -26.69506 -24.06371 -23.01224 -21.56828 -20.00137 -18.47484 -16.94635 -16.69971 -16.09592 -15.82041 -15.04056 -14.66712 -14.56750 -14.19373 -13.85945 -13.66339 -13.28308 -13.19372 -12.96714 -12.66883 -12.53485 -12.27455 -12.10552 -11.81077 -11.73530 -11.50658 -10.77788 -10.66455 -10.42764 -9.32032 -9.29796 -8.11771 -6.22055 0.55086 0.60438 1.40620 1.41756 1.52001 2.43426 2.92611 3.17950 3.97128 3.99049 4.17550 4.26394 4.40344 4.47178 4.51116 4.63673 4.76733 4.78830 4.91694 4.92419 4.98954 5.05833 5.15920 5.25997 5.38848 5.42556 5.45455 5.61441 5.70177 5.74323 5.95954 6.01659 6.05035 6.27397 6.38892 6.90051 7.45122 8.96454 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.044965 B = 0.008272 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.550778 B = 3383.925282 C = 3887.906464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.103 4.103 3 C -0.130 4.130 4 C -0.124 4.124 5 C -0.139 4.139 6 C -0.088 4.088 7 C -0.093 4.093 8 C -0.063 4.063 9 C 0.047 3.953 10 H -0.006 1.006 11 C -0.535 4.535 12 H 0.054 0.946 13 C 0.014 3.986 14 N -0.918 5.918 15 Si 0.952 3.048 16 H -0.276 1.276 17 H -0.284 1.284 18 H -0.267 1.267 19 C -0.097 4.097 20 C -0.074 4.074 21 H 0.076 0.924 22 H 0.060 0.940 23 H 0.084 0.916 24 H 0.147 0.853 25 H 0.150 0.850 26 H 0.133 0.867 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.261 0.739 30 H 0.048 0.952 31 H 0.034 0.966 32 H 0.056 0.944 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.738 13.011 -3.145 13.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.103 4.103 3 C -0.148 4.148 4 C -0.141 4.141 5 C -0.157 4.157 6 C -0.088 4.088 7 C -0.093 4.093 8 C -0.099 4.099 9 C 0.028 3.972 10 H 0.013 0.987 11 C -0.573 4.573 12 H 0.072 0.928 13 C -0.185 4.185 14 N -0.557 5.557 15 Si 0.777 3.223 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.191 1.191 19 C -0.135 4.135 20 C -0.111 4.111 21 H 0.095 0.905 22 H 0.079 0.921 23 H 0.103 0.897 24 H 0.165 0.835 25 H 0.168 0.832 26 H 0.151 0.849 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.627 12.892 -3.059 13.265 hybrid contribution -0.128 -1.375 -0.003 1.381 sum -0.755 11.518 -3.061 11.941 Atomic orbital electron populations 1.20881 0.90212 1.03219 1.02823 1.20239 0.97238 0.92502 1.00335 1.21225 0.94679 0.97484 1.01420 1.21330 0.94537 0.98192 1.00078 1.21356 1.00493 0.91819 1.01984 1.19893 0.93424 0.95610 0.99887 1.19903 0.93582 0.95354 1.00499 1.20477 0.97419 0.91793 1.00256 1.18589 0.92653 0.92107 0.93810 0.98739 1.21569 1.04208 0.92545 1.39019 0.92813 1.25742 0.95855 1.02314 0.94582 1.70093 1.21717 1.26703 1.37182 0.85640 0.79160 0.79556 0.77907 1.20140 1.20964 1.19125 1.21368 0.97910 0.96515 0.97733 1.20448 0.97467 0.92359 1.00812 0.90526 0.92145 0.89737 0.83516 0.83235 0.84896 0.92282 0.91974 0.93044 0.93365 0.94715 0.92553 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.01 9.52 71.23 0.68 -2.33 16 2 C -0.10 -3.28 5.89 -19.78 -0.12 -3.40 16 3 C -0.13 -3.44 9.69 22.20 0.22 -3.23 16 4 C -0.12 -3.20 10.05 22.20 0.22 -2.97 16 5 C -0.14 -4.25 9.61 22.36 0.21 -4.04 16 6 C -0.09 -3.36 5.74 -19.86 -0.11 -3.47 16 7 C -0.09 -3.64 5.74 -19.86 -0.11 -3.76 16 8 C -0.06 -2.75 4.24 29.74 0.13 -2.62 16 9 C 0.05 2.45 1.99 -11.52 -0.02 2.43 16 10 H -0.01 -0.33 8.08 -2.38 -0.02 -0.35 16 11 C -0.54 -30.24 8.49 25.60 0.22 -30.02 16 12 H 0.05 2.96 7.76 -2.91 -0.02 2.94 16 13 C 0.01 0.78 5.16 84.65 0.44 1.22 16 14 N -0.92 -54.32 12.08 21.45 0.26 -54.06 16 15 Si 0.95 44.18 29.54 68.60 2.03 46.20 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 19 C -0.10 -4.75 5.18 30.61 0.16 -4.59 16 20 C -0.07 -3.03 5.67 29.74 0.17 -2.86 16 21 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 22 H 0.06 1.74 5.95 -2.39 -0.01 1.73 16 23 H 0.08 1.74 8.08 -2.39 -0.02 1.72 16 24 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 25 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 26 H 0.13 3.44 8.05 -2.91 -0.02 3.42 16 27 H 0.06 2.57 8.11 -2.39 -0.02 2.55 16 28 H 0.06 2.64 6.27 -2.39 -0.01 2.63 16 29 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.05 2.62 6.66 -2.39 -0.02 2.60 16 31 H 0.03 1.64 8.10 -2.38 -0.02 1.62 16 32 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.08 2.72 8.12 -2.39 -0.02 2.70 16 Total: -1.00 -63.03 265.79 5.43 -57.59 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 1.08 Total: 9.91 kcal Atomic # 6 Polarization: -61.72 SS G_CDS: 2.07 Total: -59.65 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.26 Total: -54.06 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -63.03 5.43 -57.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108370616.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.279 kcal (2) G-P(sol) polarization free energy of solvation -63.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds