Wall clock time and date at job start Mon Mar 30 2020 20:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.62902 * 2 1 4 4 C 1.53004 * 109.46911 * 305.70194 * 3 2 1 5 5 C 1.50697 * 109.46732 * 180.02562 * 4 3 2 6 6 H 1.07994 * 120.00254 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99630 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00007 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00169 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46935 * 90.00009 * 9 7 5 11 11 H 1.48497 * 109.46958 * 210.00086 * 9 7 5 12 12 H 1.48500 * 109.46781 * 330.00095 * 9 7 5 13 13 O 1.43747 * 109.63426 * 239.60707 * 2 1 3 14 14 C 1.44789 * 104.81578 * 264.43622 * 13 2 1 15 15 C 1.54915 * 101.71689 * 323.89224 * 14 13 2 16 16 H 1.08995 * 110.69905 * 276.99004 * 15 14 13 17 17 C 1.53002 * 110.69224 * 153.95846 * 15 14 13 18 18 O 1.42898 * 109.47351 * 175.00259 * 17 15 14 19 19 O 1.43372 * 109.63113 * 120.23951 * 2 1 3 20 20 H 1.09002 * 109.47153 * 179.69198 * 1 2 3 21 21 H 1.09001 * 109.46832 * 59.69389 * 1 2 3 22 22 H 1.09004 * 109.47261 * 299.69370 * 1 2 3 23 23 H 1.09001 * 109.46877 * 65.69932 * 3 2 1 24 24 H 1.09002 * 109.46787 * 185.69773 * 3 2 1 25 25 H 1.08999 * 109.46466 * 299.99895 * 4 3 2 26 26 H 1.08993 * 109.47145 * 59.99646 * 4 3 2 27 27 H 0.97004 * 120.00253 * 179.97438 * 8 7 5 28 28 H 1.08992 * 110.97834 * 81.99913 * 14 13 2 29 29 H 1.08999 * 110.97920 * 205.78894 * 14 13 2 30 30 H 1.08998 * 109.47405 * 295.00373 * 17 15 14 31 31 H 1.08996 * 109.47281 * 55.00514 * 17 15 14 32 32 H 0.96699 * 114.00839 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4412 0.0000 4 6 1.4224 2.2043 -1.1714 5 6 1.9291 3.6235 -1.1718 6 1 2.6245 3.9488 -0.4123 7 6 1.5048 4.5067 -2.1418 8 7 1.9467 5.7454 -2.1419 9 14 0.3025 3.9439 -3.4560 10 1 -1.0874 4.1769 -2.9878 11 1 0.5393 4.7114 -4.7050 12 1 0.4998 2.4959 -3.7199 13 8 2.0130 -0.6850 -1.1678 14 6 2.2652 -2.0400 -0.7245 15 6 2.7885 -1.8078 0.7150 16 1 3.8515 -1.5672 0.7044 17 6 2.5223 -3.0334 1.5914 18 8 3.1163 -2.8384 2.8763 19 8 2.0117 -0.6801 1.1666 20 1 -0.3633 -1.0277 -0.0055 21 1 -0.3633 0.5186 -0.8872 22 1 -0.3634 0.5091 0.8927 23 1 1.7677 1.9254 0.9366 24 1 3.1292 1.4398 -0.1020 25 1 1.6987 1.7199 -2.1080 26 1 0.3372 2.2055 -1.0694 27 1 1.6485 6.3667 -2.8246 28 1 1.3458 -2.6253 -0.7157 29 1 3.0245 -2.5182 -1.3433 30 1 1.4472 -3.1719 1.7054 31 1 2.9546 -3.9168 1.1216 32 1 2.9874 -3.5780 3.4857 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144614027.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:20 Heat of formation + Delta-G solvation = -175.674381 kcal Electronic energy + Delta-G solvation = -15146.501987 eV Core-core repulsion = 12491.989351 eV Total energy + Delta-G solvation = -2654.512636 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 216.119 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.69066 -37.86240 -36.15783 -35.90821 -34.25542 -31.83272 -30.07740 -27.51097 -26.34021 -23.73162 -22.73085 -21.28657 -19.08587 -18.63869 -18.07171 -17.31677 -16.56520 -16.32853 -15.82365 -15.55751 -14.83192 -14.80787 -14.35127 -14.30747 -13.89015 -13.42266 -13.29875 -13.04441 -12.88754 -12.64066 -12.40297 -11.99155 -11.82234 -11.62672 -11.40474 -11.11629 -11.00925 -10.76306 -10.47970 -8.30668 -6.35482 1.34837 1.38026 1.51251 2.36302 2.38907 2.93715 3.04064 3.05535 3.73932 3.85294 3.94310 4.04198 4.15333 4.36311 4.40437 4.45700 4.54833 4.63682 4.75523 4.80105 4.82664 4.98349 5.04692 5.16661 5.38293 5.52576 5.63900 6.17145 6.27338 6.71306 6.91247 7.28773 8.86481 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.056463 B = 0.006970 C = 0.006641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.777009 B = 4016.253237 C = 4214.958887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.255 3.745 3 C -0.101 4.101 4 C 0.002 3.998 5 C -0.538 4.538 6 H 0.027 0.973 7 C 0.005 3.995 8 N -0.952 5.952 9 Si 0.952 3.048 10 H -0.260 1.260 11 H -0.281 1.281 12 H -0.248 1.248 13 O -0.387 6.387 14 C 0.021 3.979 15 C 0.035 3.965 16 H 0.075 0.925 17 C 0.086 3.914 18 O -0.594 6.594 19 O -0.388 6.388 20 H 0.081 0.919 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.064 0.936 24 H 0.044 0.956 25 H 0.020 0.980 26 H 0.031 0.969 27 H 0.268 0.732 28 H 0.101 0.899 29 H 0.135 0.865 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.918 -22.692 4.176 23.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.178 3.822 3 C -0.139 4.139 4 C -0.036 4.036 5 C -0.576 4.576 6 H 0.046 0.954 7 C -0.191 4.191 8 N -0.592 5.592 9 Si 0.774 3.226 10 H -0.184 1.184 11 H -0.207 1.207 12 H -0.171 1.171 13 O -0.309 6.309 14 C -0.055 4.055 15 C -0.023 4.023 16 H 0.093 0.907 17 C 0.008 3.992 18 O -0.403 6.403 19 O -0.310 6.310 20 H 0.100 0.900 21 H 0.093 0.907 22 H 0.093 0.907 23 H 0.083 0.917 24 H 0.063 0.937 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.119 0.881 29 H 0.153 0.847 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -2.768 -21.819 3.831 22.326 hybrid contribution -0.152 0.063 -0.161 0.230 sum -2.920 -21.756 3.670 22.256 Atomic orbital electron populations 1.22357 0.92464 1.03720 1.03720 1.23454 0.93861 0.90397 0.74460 1.21684 0.99845 0.92521 0.99870 1.19445 0.96315 0.93188 0.94630 1.21479 1.27178 0.96108 1.12814 0.95443 1.26033 0.98315 0.94564 1.00223 1.70075 1.46639 1.06005 1.36510 0.85636 0.79271 0.79734 0.77958 1.18443 1.20682 1.17116 1.89332 1.86240 1.23073 1.32209 1.24570 1.03194 0.84607 0.93103 1.24056 0.96629 0.87110 0.94483 0.90653 1.22284 0.98403 0.94730 0.83769 1.86509 1.79564 1.48738 1.25486 1.88957 1.69546 1.42636 1.29842 0.90021 0.90691 0.90656 0.91703 0.93736 0.96194 0.95111 0.92367 0.88149 0.84724 0.91619 0.88291 0.74857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.14 8.70 71.98 0.63 -4.51 16 2 C 0.25 9.23 1.15 30.60 0.04 9.27 16 3 C -0.10 -4.56 4.84 30.60 0.15 -4.41 16 4 C 0.00 0.08 3.44 29.85 0.10 0.18 16 5 C -0.54 -32.98 9.66 25.60 0.25 -32.73 16 6 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 7 C 0.01 0.32 5.47 84.66 0.46 0.79 16 8 N -0.95 -61.74 13.96 21.45 0.30 -61.44 16 9 Si 0.95 45.63 27.47 68.60 1.88 47.51 16 10 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 13 O -0.39 -13.35 10.60 -126.22 -1.34 -14.69 16 14 C 0.02 0.46 7.36 72.64 0.53 1.00 16 15 C 0.03 0.88 3.98 31.25 0.12 1.00 16 16 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 17 C 0.09 1.45 6.79 71.98 0.49 1.94 16 18 O -0.59 -12.12 13.66 -148.98 -2.03 -14.15 16 19 O -0.39 -13.35 10.57 -125.66 -1.33 -14.68 16 20 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 21 H 0.07 2.45 6.34 -2.39 -0.02 2.44 16 22 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 23 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 24 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.02 1.01 6.92 -2.39 -0.02 1.00 16 26 H 0.03 1.46 5.77 -2.39 -0.01 1.44 16 27 H 0.27 16.06 8.31 -92.70 -0.77 15.29 16 28 H 0.10 1.64 8.04 -2.39 -0.02 1.63 16 29 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.40 3.62 9.12 -74.06 -0.68 2.95 16 Total: -1.00 -77.61 266.01 0.63 -76.99 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 0.38 Total: 7.95 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: 2.77 Total: -27.49 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: 0.30 Total: -61.44 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -4.70 Total: -43.52 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.88 Total: 47.51 kcal Total: -77.61 0.63 -76.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144614027.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.689 kcal (2) G-P(sol) polarization free energy of solvation -77.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds