Wall clock time and date at job start Mon Mar 30 2020 20:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38148 * 119.89741 * 2 1 4 4 C 1.38204 * 119.94072 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.93239 * 359.97356 * 4 3 2 6 6 C 1.38452 * 120.21571 * 359.97438 * 5 4 3 7 7 C 1.38258 * 119.85183 * 0.02562 * 6 5 4 8 8 C 1.51368 * 109.74980 * 180.02562 * 7 6 5 9 9 C 1.54347 * 105.17635 * 342.81911 * 8 7 6 10 10 C 1.51371 * 130.39434 * 180.02562 * 6 5 4 11 11 H 1.09002 * 110.30296 * 316.09358 * 10 6 5 12 12 C 1.52999 * 110.38960 * 78.20472 * 10 6 5 13 13 C 1.50703 * 109.47012 * 292.17200 * 12 10 6 14 14 H 1.08004 * 119.99956 * 359.97438 * 13 12 10 15 15 C 1.37881 * 119.99786 * 179.97438 * 13 12 10 16 16 N 1.31511 * 119.99552 * 179.97438 * 15 13 12 17 17 Si 1.86793 * 120.00131 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47045 * 89.99883 * 17 15 13 19 19 H 1.48501 * 109.46948 * 209.99869 * 17 15 13 20 20 H 1.48501 * 109.47262 * 330.00191 * 17 15 13 21 21 H 1.08999 * 109.47126 * 270.02535 * 1 2 3 22 22 H 1.08996 * 109.46845 * 30.02434 * 1 2 3 23 23 H 1.08997 * 109.47053 * 150.02637 * 1 2 3 24 24 H 1.08003 * 120.02711 * 359.97438 * 3 2 1 25 25 H 1.07995 * 120.03155 * 179.97438 * 4 3 2 26 26 H 1.08002 * 119.89270 * 179.97438 * 5 4 3 27 27 H 1.09007 * 110.30132 * 223.89240 * 8 7 6 28 28 H 1.08997 * 110.29869 * 101.74776 * 8 7 6 29 29 H 1.08997 * 110.82194 * 268.12849 * 9 8 7 30 30 H 1.08993 * 110.98781 * 144.65402 * 9 8 7 31 31 H 1.09003 * 109.47061 * 52.16628 * 12 10 6 32 32 H 1.08994 * 109.47684 * 172.16983 * 12 10 6 33 33 H 0.97001 * 120.00307 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.1976 0.0000 4 6 3.5776 1.1987 -0.0005 5 6 4.2678 0.0020 -0.0005 6 6 3.5796 -1.1993 0.0006 7 6 2.1970 -1.2004 0.0011 8 6 1.6866 -2.6254 0.0029 9 6 2.8900 -3.4862 -0.4366 10 6 4.0923 -2.6236 0.0013 11 1 4.9131 -2.7305 -0.7078 12 6 4.5492 -3.0249 1.4053 13 6 5.7767 -2.2346 1.7791 14 1 6.1899 -1.5181 1.0845 15 6 6.3723 -2.4263 3.0078 16 7 7.4438 -1.7370 3.3337 17 14 5.6573 -3.6650 4.2093 18 1 6.2785 -4.9939 3.9785 19 1 5.9352 -3.2233 5.5995 20 1 4.1896 -3.7625 4.0049 21 1 -0.3633 0.0005 1.0277 22 1 -0.3633 0.8897 -0.5142 23 1 -0.3633 -0.8902 -0.5134 24 1 1.6543 2.1322 -0.0004 25 1 4.1174 2.1341 -0.0010 26 1 5.3479 0.0036 -0.0014 27 1 0.8652 -2.7338 -0.7055 28 1 1.3635 -2.9101 1.0042 29 1 2.8899 -3.6294 -1.5171 30 1 2.8927 -4.4460 0.0798 31 1 3.7524 -2.8179 2.1197 32 1 4.7836 -4.0892 1.4208 33 1 7.8632 -1.8721 4.1979 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195968872.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:34 Heat of formation + Delta-G solvation = 2.379533 kcal Electronic energy + Delta-G solvation = -14274.343505 eV Core-core repulsion = 12070.693881 eV Total energy + Delta-G solvation = -2203.649624 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.121 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.77424 -35.79218 -33.01133 -32.28486 -29.85242 -28.47576 -26.38036 -25.62527 -22.10637 -21.28803 -20.26774 -18.84760 -16.64477 -15.59424 -15.09028 -14.58653 -14.31957 -13.89767 -13.21852 -13.08303 -12.76499 -12.39628 -11.99658 -11.98988 -11.80328 -11.45678 -11.22785 -11.01600 -10.76705 -10.56333 -10.30996 -9.94100 -9.74608 -9.49112 -9.07892 -8.50091 -7.98773 -7.84199 -6.00728 -3.97322 1.94624 2.00396 3.31884 3.39656 3.43533 4.33375 4.48085 4.94960 5.13180 5.31555 5.34697 5.42756 5.50499 5.62994 5.68468 5.79276 5.89440 6.01207 6.09880 6.17587 6.26777 6.33893 6.41212 6.47706 6.67986 6.78866 6.84765 7.04112 7.10151 7.22137 7.32425 7.50399 7.64955 7.82194 8.57455 9.04199 9.62147 11.12609 Molecular weight = 216.12amu Principal moments of inertia in cm(-1) A = 0.031114 B = 0.009780 C = 0.008683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.689308 B = 2862.294859 C = 3223.907094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.087 4.087 3 C -0.135 4.135 4 C -0.123 4.123 5 C -0.091 4.091 6 C -0.048 4.048 7 C -0.109 4.109 8 C -0.074 4.074 9 C -0.122 4.122 10 C -0.042 4.042 11 H 0.072 0.928 12 C -0.001 4.001 13 C -0.513 4.513 14 H 0.075 0.925 15 C 0.066 3.934 16 N -0.904 5.904 17 Si 0.875 3.125 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.266 1.266 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.113 0.887 25 H 0.116 0.884 26 H 0.124 0.876 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.017 0.983 32 H 0.016 0.984 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.083 1.234 -7.060 14.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.087 4.087 3 C -0.153 4.153 4 C -0.141 4.141 5 C -0.109 4.109 6 C -0.048 4.048 7 C -0.109 4.109 8 C -0.111 4.111 9 C -0.159 4.159 10 C -0.061 4.061 11 H 0.091 0.909 12 C -0.038 4.038 13 C -0.551 4.551 14 H 0.093 0.907 15 C -0.134 4.134 16 N -0.544 5.544 17 Si 0.703 3.297 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.191 1.191 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.131 0.869 25 H 0.134 0.866 26 H 0.142 0.858 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.035 0.965 32 H 0.034 0.966 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.960 1.257 -6.914 13.872 hybrid contribution -0.126 -0.469 0.924 1.044 sum -12.086 0.788 -5.990 13.512 Atomic orbital electron populations 1.20696 0.92189 1.01868 1.01694 1.19271 0.95159 0.92127 1.02176 1.20724 0.94272 0.96562 1.03783 1.20963 0.94061 0.97696 1.01386 1.20776 1.00445 0.91073 0.98625 1.20537 0.93233 0.95271 0.95734 1.20418 0.94554 0.94099 1.01872 1.20948 0.97894 0.91066 1.01185 1.22413 0.94842 0.98486 1.00174 1.20694 0.96038 0.89316 1.00004 0.90922 1.19574 0.96985 0.96224 0.91037 1.21143 1.09451 1.22665 1.01822 0.90665 1.24995 0.94686 0.95804 0.97952 1.69905 1.20644 1.41595 1.22206 0.86842 0.80265 0.81939 0.80651 1.20353 1.21476 1.19084 0.91800 0.92260 0.92053 0.86896 0.86594 0.85803 0.91787 0.90809 0.91920 0.90929 0.96486 0.96594 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.87 36.00 0.36 -0.99 16 2 C -0.09 -1.43 5.88 -104.58 -0.62 -2.04 16 3 C -0.14 -2.18 9.69 -39.63 -0.38 -2.56 16 4 C -0.12 -2.15 10.05 -39.63 -0.40 -2.55 16 5 C -0.09 -1.84 9.37 -39.54 -0.37 -2.22 16 6 C -0.05 -0.97 5.17 -104.21 -0.54 -1.51 16 7 C -0.11 -1.98 6.00 -104.21 -0.63 -2.60 16 8 C -0.07 -1.16 6.27 -26.85 -0.17 -1.33 16 9 C -0.12 -1.98 6.60 -25.34 -0.17 -2.15 16 10 C -0.04 -0.86 2.84 -90.75 -0.26 -1.12 16 11 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 12 C 0.00 -0.02 3.43 -27.88 -0.10 -0.12 16 13 C -0.51 -14.49 9.04 -34.44 -0.31 -14.80 16 14 H 0.08 2.25 6.48 -52.48 -0.34 1.91 16 15 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 16 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 17 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 23 H 0.06 0.70 7.29 -51.93 -0.38 0.33 16 24 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 25 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 26 H 0.12 2.62 6.96 -52.49 -0.37 2.26 16 27 H 0.06 0.84 7.62 -51.92 -0.40 0.45 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.12 7.88 -51.93 -0.41 0.71 16 31 H 0.02 0.42 7.19 -51.93 -0.37 0.05 16 32 H 0.02 0.37 7.54 -51.93 -0.39 -0.02 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 267.90 15.07 4.04 4.04 Total: -1.00 -30.81 267.90 -8.31 -39.13 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -4.78 Total: -1.16 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: -3.67 Total: -32.14 kcal Atomic # 7 Polarization: -27.97 SS G_CDS: 0.77 Total: -27.20 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.81 -8.31 -39.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195968872.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.505 kcal (2) G-P(sol) polarization free energy of solvation -30.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds