Wall clock time and date at job start Mon Mar 30 2020 20:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36157 * 125.70654 * 2 1 4 4 C 1.35463 * 108.87297 * 180.02562 * 3 2 1 5 5 C 1.39886 * 107.91923 * 359.75616 * 4 3 2 6 6 C 1.37621 * 125.70891 * 179.97438 * 2 1 3 7 7 C 1.46272 * 126.24664 * 359.97438 * 6 2 1 8 8 C 1.39164 * 125.84178 * 343.27401 * 7 6 2 9 9 C 1.38251 * 107.88785 * 179.97438 * 8 7 6 10 10 C 1.40114 * 107.62240 * 0.02562 * 9 8 7 11 11 C 1.39581 * 126.06372 * 180.02562 * 10 9 8 12 12 H 1.07992 * 120.00384 * 179.97438 * 11 10 9 13 13 C 1.39940 * 119.99792 * 359.96512 * 11 10 9 14 14 N 1.30941 * 119.99997 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00016 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46512 * 60.00553 * 15 13 11 17 17 H 1.48495 * 109.47186 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47184 * 300.00646 * 15 13 11 19 19 N 1.37586 * 125.84502 * 163.27076 * 7 6 2 20 20 H 0.96997 * 125.85305 * 359.96854 * 19 7 6 21 21 H 1.09004 * 109.47422 * 264.45015 * 1 2 3 22 22 H 1.09007 * 109.47273 * 24.44686 * 1 2 3 23 23 H 1.09004 * 109.47063 * 144.44773 * 1 2 3 24 24 H 1.08001 * 125.56537 * 0.03140 * 3 2 1 25 25 H 1.08006 * 126.04433 * 180.02562 * 4 3 2 26 26 H 1.07995 * 126.44055 * 180.24969 * 5 4 3 27 27 H 1.08003 * 126.05536 * 0.02562 * 8 7 6 28 28 H 1.07999 * 126.19102 * 180.25722 * 9 8 7 29 29 H 0.97005 * 119.99413 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2596 1.1056 0.0000 4 6 3.5562 0.7133 -0.0006 5 6 3.5827 -0.6853 0.0047 6 6 2.2682 -1.1175 0.0005 7 6 1.8151 -2.5082 0.0016 8 6 0.5355 -2.9482 0.3271 9 6 0.5160 -4.3251 0.2049 10 6 1.7943 -4.7334 -0.1983 11 6 2.2001 -6.0474 -0.4368 12 1 3.2144 -6.2517 -0.7460 13 6 1.2925 -7.1002 -0.2750 14 7 0.0625 -6.8526 0.0996 15 14 1.8353 -8.8588 -0.5948 16 1 2.9535 -9.2055 0.3189 17 1 0.6956 -9.7800 -0.3548 18 1 2.2882 -8.9887 -2.0031 19 7 2.5809 -3.6054 -0.3189 20 1 3.5136 -3.5891 -0.5847 21 1 -0.3634 -0.0994 1.0229 22 1 -0.3634 0.9356 -0.4253 23 1 -0.3633 -0.8361 -0.5976 24 1 1.9128 2.1284 0.0005 25 1 4.4173 1.3652 -0.0003 26 1 4.4635 -1.3102 0.0095 27 1 -0.2953 -2.3243 0.6220 28 1 -0.3322 -4.9693 0.3838 29 1 -0.5667 -7.5824 0.2114 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214412394.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:51 Heat of formation + Delta-G solvation = 79.377383 kcal Electronic energy + Delta-G solvation = -13654.049902 eV Core-core repulsion = 11350.198811 eV Total energy + Delta-G solvation = -2303.851090 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.34366 -38.57942 -33.58640 -32.35459 -29.67695 -29.17181 -27.29207 -25.92665 -23.98411 -20.25346 -19.98389 -18.76953 -18.64552 -17.52431 -16.05646 -15.28076 -14.69558 -14.18285 -13.34837 -12.85832 -12.53281 -12.48424 -12.29411 -11.85287 -11.71914 -11.65816 -11.46667 -11.21507 -11.19505 -10.53277 -10.11969 -9.70295 -9.39329 -8.06095 -7.94017 -7.29471 -6.59256 -6.39693 -4.14578 2.49091 3.02236 3.07182 3.09514 3.42108 3.49249 3.92060 4.08567 4.64168 4.89748 5.19894 5.40963 5.57250 5.58930 5.81639 5.98576 6.10126 6.23058 6.65770 6.77688 6.93243 7.09909 7.14322 7.55808 7.74635 7.84466 7.86533 7.99923 8.21563 8.28364 8.78984 8.92606 9.12491 9.38665 10.27913 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.063954 B = 0.006892 C = 0.006270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.709950 B = 4061.487433 C = 4464.493096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.446 5.446 3 C -0.059 4.059 4 C -0.187 4.187 5 C -0.252 4.252 6 C 0.149 3.851 7 C -0.076 4.076 8 C -0.149 4.149 9 C -0.280 4.280 10 C 0.233 3.767 11 C -0.450 4.450 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.795 5.795 15 Si 0.925 3.075 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.267 1.267 19 N -0.583 5.583 20 H 0.394 0.606 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.089 0.911 24 H 0.150 0.850 25 H 0.124 0.876 26 H 0.122 0.878 27 H 0.104 0.896 28 H 0.159 0.841 29 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.367 6.704 -0.523 6.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.123 5.123 3 C -0.186 4.186 4 C -0.212 4.212 5 C -0.275 4.275 6 C 0.036 3.964 7 C -0.182 4.182 8 C -0.175 4.175 9 C -0.302 4.302 10 C 0.120 3.880 11 C -0.485 4.485 12 H 0.090 0.910 13 C -0.144 4.144 14 N -0.423 5.423 15 Si 0.749 3.251 16 H -0.192 1.192 17 H -0.203 1.203 18 H -0.192 1.192 19 N -0.185 5.185 20 H 0.228 0.772 21 H 0.085 0.915 22 H 0.092 0.908 23 H 0.108 0.892 24 H 0.168 0.832 25 H 0.142 0.858 26 H 0.140 0.860 27 H 0.122 0.878 28 H 0.176 0.824 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.133 6.721 -0.491 6.740 hybrid contribution 0.650 -0.614 -0.203 0.917 sum 0.517 6.107 -0.694 6.168 Atomic orbital electron populations 1.22069 0.78050 1.03654 1.02958 1.43789 1.05597 1.05389 1.57503 1.21483 0.90553 0.90563 1.16037 1.20519 0.95215 0.95094 1.10367 1.20881 0.94458 0.94522 1.17601 1.18349 0.88735 0.85109 1.04214 1.17203 0.93024 0.83441 1.24496 1.20988 0.93672 0.96360 1.06512 1.21777 0.98757 0.92671 1.16993 1.18216 0.89306 0.85135 0.95361 1.18406 0.98289 0.89244 1.42573 0.91010 1.25667 0.94229 1.01312 0.93147 1.69771 1.04094 1.33650 1.34748 0.86106 0.78881 0.80414 0.79661 1.19156 1.20275 1.19177 1.41898 1.11073 1.05463 1.60083 0.77159 0.91475 0.90834 0.89200 0.83239 0.85804 0.85958 0.87808 0.82416 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 9.59 59.84 0.57 1.68 15 2 N -0.45 -8.23 3.18 -120.06 -0.38 -8.61 15 3 C -0.06 -0.98 11.40 -16.62 -0.19 -1.17 15 4 C -0.19 -3.30 10.81 -39.96 -0.43 -3.73 15 5 C -0.25 -5.06 10.89 -38.92 -0.42 -5.48 15 6 C 0.15 3.20 6.87 -81.99 -0.56 2.64 15 7 C -0.08 -1.81 6.99 -81.71 -0.57 -2.38 15 8 C -0.15 -3.61 9.44 -39.23 -0.37 -3.98 15 9 C -0.28 -7.52 9.73 -38.87 -0.38 -7.90 15 10 C 0.23 6.24 6.86 -83.86 -0.58 5.67 15 11 C -0.45 -11.77 9.43 -38.44 -0.36 -12.13 15 12 H 0.07 1.76 7.84 -52.49 -0.41 1.35 15 13 C 0.07 1.83 5.50 -17.29 -0.10 1.74 15 14 N -0.80 -20.36 10.21 55.55 0.57 -19.79 15 15 Si 0.92 18.57 29.56 -169.99 -5.03 13.55 15 16 H -0.27 -5.31 7.11 56.52 0.40 -4.90 15 17 H -0.28 -5.43 7.11 56.52 0.40 -5.03 15 18 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 19 N -0.58 -14.11 6.22 -6.92 -0.04 -14.15 15 20 H 0.39 8.50 8.96 -40.82 -0.37 8.13 15 21 H 0.07 0.92 8.05 -51.93 -0.42 0.51 15 22 H 0.07 0.84 8.12 -51.93 -0.42 0.42 15 23 H 0.09 1.42 6.43 -51.93 -0.33 1.09 15 24 H 0.15 1.95 8.06 -52.49 -0.42 1.52 15 25 H 0.12 1.84 8.06 -52.48 -0.42 1.42 15 26 H 0.12 2.33 8.06 -52.49 -0.42 1.91 15 27 H 0.10 2.22 6.06 -52.48 -0.32 1.90 15 28 H 0.16 4.39 5.63 -52.49 -0.30 4.09 15 29 H 0.28 6.46 8.30 -40.82 -0.34 6.12 15 LS Contribution 251.57 15.07 3.79 3.79 Total: -1.00 -29.22 251.57 -7.45 -36.66 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -2.97 Total: 13.61 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -3.39 Total: -25.06 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.14 Total: -42.55 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.22 -7.45 -36.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214412394.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.041 kcal (2) G-P(sol) polarization free energy of solvation -29.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds