Wall clock time and date at job start Mon Mar 30 2020 20:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32974 * 126.27705 * 2 1 4 4 C 1.31094 * 110.06020 * 179.97438 * 3 2 1 5 5 C 1.50695 * 125.25074 * 180.02562 * 4 3 2 6 6 N 1.35920 * 109.49634 * 359.97438 * 4 3 2 7 7 C 1.37473 * 132.18477 * 179.97438 * 6 4 3 8 8 C 1.34036 * 121.15489 * 180.02562 * 7 6 4 9 9 C 1.46927 * 119.65203 * 359.97438 * 8 7 6 10 10 C 1.40426 * 120.75472 * 179.97438 * 9 8 7 11 11 H 1.08008 * 120.00117 * 207.19318 * 10 9 8 12 12 C 1.39725 * 120.00177 * 27.19558 * 10 9 8 13 13 N 1.30976 * 120.00203 * 196.75936 * 12 10 9 14 14 Si 1.86799 * 120.00002 * 16.76558 * 12 10 9 15 15 H 1.48500 * 109.47175 * 264.85265 * 14 12 10 16 16 H 1.48503 * 109.47188 * 24.84985 * 14 12 10 17 17 H 1.48497 * 109.47213 * 144.85040 * 14 12 10 18 18 C 1.40698 * 118.48758 * 0.27244 * 9 8 7 19 19 C 1.38163 * 106.73497 * 0.02562 * 6 4 3 20 20 H 1.09007 * 109.46720 * 270.02503 * 1 2 3 21 21 H 1.09000 * 109.47729 * 30.02369 * 1 2 3 22 22 H 1.08998 * 109.47096 * 150.02785 * 1 2 3 23 23 H 1.09009 * 109.47131 * 269.95433 * 5 4 3 24 24 H 1.09005 * 109.47343 * 29.95376 * 5 4 3 25 25 H 1.09006 * 109.47066 * 149.95557 * 5 4 3 26 26 H 1.08000 * 119.42122 * 0.04299 * 7 6 4 27 27 H 1.07999 * 120.17222 * 180.02562 * 8 7 6 28 28 H 0.97001 * 119.99986 * 179.97438 * 13 12 10 29 29 H 1.07994 * 120.56803 * 179.72149 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2938 1.0720 0.0000 4 6 3.5526 0.7059 0.0006 5 6 4.7314 1.6446 0.0013 6 7 3.6303 -0.6511 0.0015 7 6 4.7001 -1.5145 0.0019 8 6 4.5194 -2.8426 0.0024 9 6 3.1561 -3.3906 0.0031 10 6 2.9400 -4.7782 0.0030 11 1 2.0346 -5.1837 -0.4240 12 6 3.8962 -5.6342 0.5555 13 7 3.8698 -6.9134 0.2754 14 14 5.2122 -4.9543 1.6935 15 1 6.4419 -4.6665 0.9122 16 1 4.7224 -3.7024 2.3245 17 1 5.5186 -5.9533 2.7486 18 6 2.0722 -2.4936 -0.0027 19 6 2.3321 -1.1240 0.0009 20 1 -0.3633 0.0004 1.0278 21 1 -0.3634 0.8897 -0.5142 22 1 -0.3633 -0.8902 -0.5134 23 1 5.0166 1.8705 -1.0263 24 1 4.4607 2.5675 0.5144 25 1 5.5696 1.1750 0.5162 26 1 5.7038 -1.1156 0.0021 27 1 5.3713 -3.5063 0.0031 28 1 4.5339 -7.5076 0.6587 29 1 1.0563 -2.8598 -0.0069 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214413195.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:04 Heat of formation + Delta-G solvation = 45.524045 kcal Electronic energy + Delta-G solvation = -13935.135251 eV Core-core repulsion = 11629.816170 eV Total energy + Delta-G solvation = -2305.319081 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.10795 -38.20240 -35.76328 -34.42643 -32.44501 -31.13943 -29.93230 -28.51057 -25.05187 -23.81682 -22.13523 -21.27590 -19.64267 -17.85455 -17.37750 -16.82225 -16.65781 -15.50019 -15.34221 -14.94407 -14.42703 -13.98984 -13.90048 -13.65149 -13.30696 -13.22497 -12.97550 -12.84265 -12.75645 -12.25490 -11.85503 -11.75377 -11.31502 -10.91336 -10.74782 -9.90163 -9.06935 -8.27910 -6.45905 0.20885 0.59843 1.18764 1.37054 1.44815 2.00331 2.00721 2.23170 2.34395 3.19038 3.72653 3.73605 3.99926 4.22502 4.38351 4.51006 4.69453 4.71170 4.79749 4.83899 4.92434 5.01560 5.08981 5.16263 5.21793 5.47015 5.57831 5.97803 6.03091 6.07952 6.44186 6.58366 6.72097 7.29302 8.00228 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.038398 B = 0.010122 C = 0.008399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.033909 B = 2765.668614 C = 3333.048961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 C -0.124 4.124 3 N -0.467 5.467 4 C 0.094 3.906 5 C -0.045 4.045 6 N -0.400 5.400 7 C 0.068 3.932 8 C -0.194 4.194 9 C 0.078 3.922 10 C -0.450 4.450 11 H 0.062 0.938 12 C 0.047 3.953 13 N -0.823 5.823 14 Si 0.964 3.036 15 H -0.230 1.230 16 H -0.257 1.257 17 H -0.272 1.272 18 C -0.300 4.300 19 C 0.075 3.925 20 H 0.059 0.941 21 H 0.068 0.932 22 H 0.061 0.939 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.199 0.801 27 H 0.151 0.849 28 H 0.303 0.697 29 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.439 7.668 1.676 10.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.254 4.254 3 N -0.183 5.183 4 C -0.158 4.158 5 C -0.104 4.104 6 N -0.076 5.076 7 C -0.051 4.051 8 C -0.216 4.216 9 C 0.073 3.927 10 C -0.478 4.478 11 H 0.080 0.920 12 C -0.172 4.172 13 N -0.447 5.447 14 Si 0.786 3.214 15 H -0.155 1.155 16 H -0.181 1.181 17 H -0.198 1.198 18 C -0.322 4.322 19 C -0.034 4.034 20 H 0.078 0.922 21 H 0.087 0.913 22 H 0.080 0.920 23 H 0.101 0.899 24 H 0.108 0.892 25 H 0.106 0.894 26 H 0.215 0.785 27 H 0.168 0.832 28 H 0.114 0.886 29 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.298 8.327 1.658 10.571 hybrid contribution 0.143 -1.392 0.204 1.414 sum 6.441 6.935 1.862 9.646 Atomic orbital electron populations 1.19702 0.86531 1.01830 1.01394 1.21133 0.96785 0.86548 1.20983 1.69345 1.00684 1.31230 1.17036 1.23787 0.95663 0.80067 1.16286 1.20100 0.90461 0.96033 1.03764 1.42889 1.06344 1.07450 1.50951 1.21782 0.92271 0.89439 1.01612 1.22256 0.97758 0.94461 1.07147 1.18810 0.90921 0.93215 0.89804 1.19247 1.04987 0.90195 1.33384 0.91959 1.27016 0.99382 0.94600 0.96174 1.69741 1.33802 1.06103 1.35056 0.85591 0.78275 0.79196 0.78343 1.15469 1.18096 1.19771 1.20063 0.98165 0.88467 1.25533 1.19507 0.84262 0.94855 1.04760 0.92201 0.91325 0.92023 0.89857 0.89179 0.89446 0.78472 0.83234 0.88632 0.87163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.35 10.44 71.24 0.74 -0.61 15 2 C -0.12 -5.56 7.24 42.67 0.31 -5.26 15 3 N -0.47 -20.36 11.17 -172.62 -1.93 -22.29 15 4 C 0.09 3.63 7.97 137.67 1.10 4.73 15 5 C -0.05 -1.15 10.31 71.23 0.73 -0.41 15 6 N -0.40 -16.80 2.97 -337.35 -1.00 -17.80 15 7 C 0.07 2.49 10.70 82.85 0.89 3.37 15 8 C -0.19 -8.00 7.17 23.59 0.17 -7.83 15 9 C 0.08 3.83 5.30 -19.87 -0.11 3.73 15 10 C -0.45 -23.63 9.58 23.16 0.22 -23.40 15 11 H 0.06 3.58 8.06 -2.91 -0.02 3.56 15 12 C 0.05 2.25 5.45 85.18 0.46 2.72 15 13 N -0.82 -40.74 13.94 21.79 0.30 -40.44 15 14 Si 0.96 36.38 24.37 68.60 1.67 38.06 15 15 H -0.23 -7.40 6.62 99.48 0.66 -6.74 15 16 H -0.26 -10.22 6.69 99.48 0.67 -9.56 15 17 H -0.27 -9.74 7.11 99.48 0.71 -9.03 15 18 C -0.30 -14.93 9.91 23.15 0.23 -14.71 15 19 C 0.08 3.59 6.72 38.72 0.26 3.85 15 20 H 0.06 2.04 8.14 -2.38 -0.02 2.03 15 21 H 0.07 2.28 8.14 -2.39 -0.02 2.26 15 22 H 0.06 2.18 8.14 -2.39 -0.02 2.16 15 23 H 0.08 1.83 8.14 -2.38 -0.02 1.82 15 24 H 0.09 2.09 8.14 -2.38 -0.02 2.07 15 25 H 0.09 1.76 7.91 -2.38 -0.02 1.74 15 26 H 0.20 4.92 7.87 -2.91 -0.02 4.90 15 27 H 0.15 5.50 4.36 -2.91 -0.01 5.49 15 28 H 0.30 13.15 8.30 -92.71 -0.77 12.38 15 29 H 0.11 5.46 8.06 -2.91 -0.02 5.44 15 Total: -1.00 -62.89 248.93 5.12 -57.78 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 1.06 Total: 18.51 kcal Atomic # 6 Polarization: -38.83 SS G_CDS: 5.01 Total: -33.82 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -2.63 Total: -80.53 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 1.67 Total: 38.06 kcal Total: -62.89 5.12 -57.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214413195.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.300 kcal (2) G-P(sol) polarization free energy of solvation -62.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds