Wall clock time and date at job start Mon Mar 30 2020 20:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33093 * 125.68327 * 2 1 4 4 C 1.32808 * 109.24019 * 180.02562 * 3 2 1 5 5 C 1.40463 * 132.10185 * 180.02562 * 4 3 2 6 6 C 1.38291 * 119.98191 * 179.97438 * 5 4 3 7 7 C 1.38616 * 119.90990 * 359.97438 * 6 5 4 8 8 C 1.40055 * 119.82364 * 0.02562 * 7 6 5 9 9 C 1.39342 * 120.00866 * 179.97438 * 8 7 6 10 10 H 1.08007 * 119.99674 * 212.34277 * 9 8 7 11 11 C 1.40304 * 120.00394 * 32.34948 * 9 8 7 12 12 N 1.30676 * 119.99609 * 15.81659 * 11 9 8 13 13 Si 1.86801 * 120.00182 * 195.81134 * 11 9 8 14 14 H 1.48499 * 109.46594 * 89.99925 * 13 11 9 15 15 H 1.48494 * 109.46984 * 210.00073 * 13 11 9 16 16 H 1.48500 * 109.47164 * 330.00458 * 13 11 9 17 17 N 1.37237 * 107.95902 * 359.97438 * 4 3 2 18 18 C 1.35656 * 125.68789 * 180.02562 * 2 1 3 19 19 C 1.50703 * 126.44074 * 359.71137 * 18 2 1 20 20 H 1.08997 * 109.47183 * 269.97567 * 1 2 3 21 21 H 1.08998 * 109.47160 * 29.98023 * 1 2 3 22 22 H 1.08996 * 109.46995 * 149.97611 * 1 2 3 23 23 H 1.07998 * 120.01048 * 359.97438 * 5 4 3 24 24 H 1.08000 * 120.04212 * 179.97438 * 6 5 4 25 25 H 1.08003 * 120.08720 * 180.02562 * 7 6 5 26 26 H 0.97000 * 119.99454 * 180.02562 * 12 11 9 27 27 H 1.08993 * 109.47135 * 96.17092 * 19 18 2 28 28 H 1.09003 * 109.47548 * 216.17604 * 19 18 2 29 29 H 1.09004 * 109.47421 * 336.17468 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2833 1.0811 0.0000 4 6 3.5571 0.7051 -0.0006 5 6 4.7553 1.4381 -0.0003 6 6 5.9699 0.7769 -0.0005 7 6 6.0025 -0.6089 -0.0004 8 6 4.8041 -1.3338 -0.0007 9 6 4.8324 -2.7269 -0.0011 10 1 4.0532 -3.2827 -0.5017 11 6 5.8729 -3.4078 0.6488 12 7 6.6331 -2.7762 1.5037 13 14 6.1713 -5.2170 0.2922 14 1 7.1254 -5.3478 -0.8381 15 1 6.7392 -5.8720 1.4979 16 1 4.8864 -5.8693 -0.0666 17 7 3.5934 -0.6668 -0.0003 18 6 2.2984 -1.1018 -0.0005 19 6 1.8359 -2.5361 0.0050 20 1 -0.3633 -0.0004 1.0276 21 1 -0.3633 0.8901 -0.5135 22 1 -0.3633 -0.8897 -0.5142 23 1 4.7281 2.5177 0.0000 24 1 6.8918 1.3395 -0.0008 25 1 6.9495 -1.1282 -0.0002 26 1 7.3527 -3.2469 1.9527 27 1 1.8254 -2.9183 -1.0157 28 1 2.5164 -3.1351 0.6103 29 1 0.8313 -2.5924 0.4244 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214413694.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:16 Heat of formation + Delta-G solvation = 43.098571 kcal Electronic energy + Delta-G solvation = -14184.515212 eV Core-core repulsion = 11879.090954 eV Total energy + Delta-G solvation = -2305.424258 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.13568 -38.11470 -35.78399 -34.28412 -32.78848 -30.84718 -29.33006 -27.97418 -25.84165 -23.31052 -22.58910 -20.93541 -19.20211 -17.81712 -17.44189 -16.62139 -16.39164 -15.83634 -15.03156 -14.31939 -14.06294 -13.80920 -13.71394 -13.68203 -13.66607 -13.22888 -12.89536 -12.74310 -12.33378 -12.28777 -11.88735 -11.63948 -11.31665 -11.07303 -10.68274 -9.19011 -8.97873 -8.43805 -6.57011 0.38512 0.89672 1.36443 1.42619 1.52450 2.05683 2.14705 2.27639 2.63485 3.30111 3.71401 4.09759 4.35738 4.39958 4.63109 4.72076 4.77932 4.80415 4.88992 4.91221 4.96483 5.08877 5.14291 5.28708 5.36518 5.64930 5.85102 5.94862 6.14978 6.27006 6.32574 6.51966 6.85599 7.37671 8.04308 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.031382 B = 0.011869 C = 0.008898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.029946 B = 2358.461620 C = 3145.994192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.018 3.982 3 N -0.573 5.573 4 C 0.234 3.766 5 C -0.276 4.276 6 C -0.032 4.032 7 C -0.280 4.280 8 C 0.257 3.743 9 C -0.472 4.472 10 H 0.102 0.898 11 C 0.045 3.955 12 N -0.792 5.792 13 Si 0.998 3.002 14 H -0.256 1.256 15 H -0.263 1.263 16 H -0.251 1.251 17 N -0.391 5.391 18 C -0.115 4.115 19 C -0.057 4.057 20 H 0.077 0.923 21 H 0.069 0.931 22 H 0.090 0.910 23 H 0.129 0.871 24 H 0.141 0.859 25 H 0.126 0.874 26 H 0.302 0.698 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.777 -5.060 -1.455 5.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.114 4.114 3 N -0.296 5.296 4 C -0.008 4.008 5 C -0.299 4.299 6 C -0.055 4.055 7 C -0.302 4.302 8 C 0.155 3.845 9 C -0.502 4.502 10 H 0.120 0.880 11 C -0.177 4.177 12 N -0.414 5.414 13 Si 0.816 3.184 14 H -0.180 1.180 15 H -0.187 1.187 16 H -0.174 1.174 17 N -0.065 5.065 18 C -0.226 4.226 19 C -0.115 4.115 20 H 0.095 0.905 21 H 0.088 0.912 22 H 0.109 0.891 23 H 0.147 0.853 24 H 0.159 0.841 25 H 0.144 0.856 26 H 0.114 0.886 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.939 -4.309 -1.270 5.368 hybrid contribution 0.817 -0.958 0.085 1.262 sum -2.122 -5.267 -1.185 5.801 Atomic orbital electron populations 1.20094 0.84808 1.03397 1.02887 1.21313 0.98001 0.87547 1.04502 1.70400 0.99019 1.30507 1.29643 1.21130 0.94522 0.81373 1.03726 1.19817 0.88212 0.98646 1.23195 1.21066 0.96854 0.94192 0.93391 1.20705 0.95957 0.93072 1.20483 1.18476 0.81872 0.93153 0.91026 1.19638 1.10424 0.89829 1.30296 0.87981 1.26911 0.92803 1.06486 0.91486 1.69780 1.13723 1.41684 1.16244 0.84947 0.80312 0.73763 0.79380 1.18040 1.18690 1.17401 1.43700 1.06305 1.08344 1.48142 1.21447 0.81812 0.99014 1.20373 1.20220 1.01648 0.87515 1.02094 0.90479 0.91238 0.89112 0.85272 0.84113 0.85608 0.88606 0.91593 0.92014 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.73 10.00 71.24 0.71 -1.02 15 2 C 0.02 0.83 7.06 41.77 0.30 1.12 15 3 N -0.57 -29.81 11.30 -182.38 -2.06 -31.87 15 4 C 0.23 12.62 7.79 133.86 1.04 13.66 15 5 C -0.28 -13.63 10.14 22.82 0.23 -13.39 15 6 C -0.03 -1.49 10.07 22.37 0.23 -1.26 15 7 C -0.28 -14.25 8.62 22.80 0.20 -14.06 15 8 C 0.26 13.64 6.36 38.84 0.25 13.89 15 9 C -0.47 -23.02 7.56 23.04 0.17 -22.85 15 10 H 0.10 4.70 5.88 -2.91 -0.02 4.69 15 11 C 0.04 1.99 5.10 85.37 0.44 2.42 15 12 N -0.79 -37.04 11.34 21.89 0.25 -36.79 15 13 Si 1.00 32.84 29.59 68.60 2.03 34.87 15 14 H -0.26 -8.19 7.11 99.48 0.71 -7.48 15 15 H -0.26 -8.20 7.11 99.48 0.71 -7.49 15 16 H -0.25 -7.94 7.11 99.48 0.71 -7.24 15 17 N -0.39 -20.79 3.00 -330.96 -0.99 -21.78 15 18 C -0.12 -5.40 7.00 41.22 0.29 -5.11 15 19 C -0.06 -2.11 8.57 71.24 0.61 -1.49 15 20 H 0.08 2.21 8.14 -2.39 -0.02 2.19 15 21 H 0.07 2.12 8.14 -2.39 -0.02 2.10 15 22 H 0.09 2.35 7.64 -2.39 -0.02 2.33 15 23 H 0.13 5.78 8.06 -2.91 -0.02 5.75 15 24 H 0.14 5.38 8.06 -2.91 -0.02 5.35 15 25 H 0.13 6.34 6.62 -2.91 -0.02 6.32 15 26 H 0.30 12.47 8.29 -92.71 -0.77 11.70 15 27 H 0.07 2.23 8.14 -2.39 -0.02 2.21 15 28 H 0.06 2.42 6.30 -2.39 -0.02 2.41 15 29 H 0.10 2.81 7.51 -2.38 -0.02 2.79 15 Total: -1.00 -62.88 247.60 4.84 -58.04 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 1.16 Total: 25.63 kcal Atomic # 6 Polarization: -32.55 SS G_CDS: 4.46 Total: -28.10 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -2.80 Total: -90.45 kcal Atomic # 14 Polarization: 32.84 SS G_CDS: 2.03 Total: 34.87 kcal Total: -62.88 4.84 -58.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214413694.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.134 kcal (2) G-P(sol) polarization free energy of solvation -62.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds