Wall clock time and date at job start Mon Mar 30 2020 20:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30207 * 126.16389 * 2 1 4 4 N 1.39816 * 110.16060 * 180.02562 * 3 2 1 5 5 C 1.46500 * 125.38748 * 179.97438 * 4 3 2 6 6 C 1.36759 * 109.22642 * 359.97438 * 4 3 2 7 7 C 1.39869 * 133.41275 * 180.28612 * 6 4 3 8 8 C 1.35860 * 120.34504 * 180.17703 * 7 6 4 9 9 C 1.41229 * 120.58683 * 359.50684 * 8 7 6 10 10 C 1.41334 * 120.03181 * 180.23143 * 9 8 7 11 11 H 1.07997 * 120.00005 * 334.44358 * 10 9 8 12 12 C 1.39865 * 119.99944 * 154.44834 * 10 9 8 13 13 N 1.30889 * 119.99849 * 343.14153 * 12 10 9 14 14 Si 1.86796 * 120.00381 * 163.14630 * 12 10 9 15 15 H 1.48506 * 109.47005 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47394 * 119.99732 * 14 12 10 17 17 H 1.48496 * 109.47377 * 239.99970 * 14 12 10 18 18 C 1.40224 * 119.92927 * 0.24755 * 9 8 7 19 19 C 1.39368 * 119.31179 * 0.02562 * 18 9 8 20 20 H 1.08999 * 109.47010 * 89.98132 * 1 2 3 21 21 H 1.09008 * 109.47309 * 209.97517 * 1 2 3 22 22 H 1.08995 * 109.47331 * 329.97674 * 1 2 3 23 23 H 1.08995 * 109.47194 * 270.00622 * 5 4 3 24 24 H 1.09009 * 109.46914 * 29.99703 * 5 4 3 25 25 H 1.08999 * 109.47130 * 149.99883 * 5 4 3 26 26 H 1.08001 * 119.82469 * 359.95325 * 7 6 4 27 27 H 1.08001 * 119.69912 * 179.73674 * 8 7 6 28 28 H 0.97001 * 119.99728 * 180.02562 * 13 12 10 29 29 H 1.08002 * 120.34708 * 180.02562 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0512 0.0000 4 7 3.6193 0.6657 -0.0006 5 6 4.7641 1.5799 -0.0013 6 6 3.6962 -0.6997 -0.0004 7 6 4.7647 -1.6023 0.0043 8 6 4.5324 -2.9409 -0.0005 9 6 3.2117 -3.4411 0.0001 10 6 2.9836 -4.8359 0.0000 11 1 3.7289 -5.5049 -0.4040 12 6 1.7925 -5.3498 0.5231 13 7 1.0441 -4.6070 1.2986 14 14 1.2698 -7.0960 0.1150 15 1 2.2816 -7.7204 -0.7749 16 1 1.1579 -7.8849 1.3681 17 1 -0.0458 -7.0710 -0.5733 18 6 2.1270 -2.5524 0.0005 19 6 2.3694 -1.1800 -0.0002 20 1 -0.3633 0.0003 -1.0277 21 1 -0.3634 -0.8903 0.5135 22 1 -0.3634 0.8897 0.5142 23 1 5.0474 1.8066 -1.0291 24 1 4.4928 2.5023 0.5125 25 1 5.6036 1.1113 0.5122 26 1 5.7796 -1.2332 0.0082 27 1 5.3653 -3.6285 -0.0011 28 1 0.2183 -4.9635 1.6616 29 1 1.1142 -2.9276 0.0015 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214414253.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:30 Heat of formation + Delta-G solvation = 73.359552 kcal Electronic energy + Delta-G solvation = -13848.457388 eV Core-core repulsion = 11544.345345 eV Total energy + Delta-G solvation = -2304.112043 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.96032 -36.16758 -33.42092 -33.01122 -29.28204 -28.83696 -28.72683 -25.67984 -23.78408 -21.55301 -20.44545 -18.60724 -17.27429 -15.86747 -15.49126 -14.69861 -14.64714 -13.59262 -13.10530 -12.99634 -12.92573 -12.44695 -12.12397 -11.82324 -11.76279 -11.51382 -11.16169 -11.06021 -10.68748 -10.19839 -10.12219 -9.68269 -9.41876 -9.11173 -8.55146 -7.43232 -6.73860 -6.65066 -4.19542 2.22414 2.81117 3.12587 3.17234 3.21739 3.35393 3.56261 4.00321 4.64107 5.19491 5.53181 5.58041 5.68593 5.70926 5.79660 5.87066 6.13197 6.23438 6.36685 6.49205 6.77926 6.90702 7.03715 7.24476 7.44416 7.54491 7.75591 7.96207 8.15094 8.22894 8.54383 8.73734 8.93713 8.96043 10.30371 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.040401 B = 0.009138 C = 0.007635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.883838 B = 3063.479833 C = 3666.257782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.072 3.928 3 N -0.280 5.280 4 N -0.426 5.426 5 C 0.126 3.874 6 C 0.033 3.967 7 C -0.132 4.132 8 C -0.140 4.140 9 C 0.075 3.925 10 C -0.465 4.465 11 H 0.076 0.924 12 C 0.075 3.925 13 N -0.803 5.803 14 Si 0.904 3.096 15 H -0.262 1.262 16 H -0.277 1.277 17 H -0.273 1.273 18 C -0.114 4.114 19 C -0.135 4.135 20 H 0.069 0.931 21 H 0.080 0.920 22 H 0.064 0.936 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.278 0.722 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.148 4.442 -1.589 4.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 N -0.095 5.095 4 N -0.219 5.219 5 C -0.017 4.017 6 C -0.076 4.076 7 C -0.154 4.154 8 C -0.162 4.162 9 C 0.072 3.928 10 C -0.496 4.496 11 H 0.094 0.906 12 C -0.141 4.141 13 N -0.430 5.430 14 Si 0.729 3.271 15 H -0.186 1.186 16 H -0.202 1.202 17 H -0.198 1.198 18 C -0.136 4.136 19 C -0.142 4.142 20 H 0.088 0.912 21 H 0.098 0.902 22 H 0.083 0.917 23 H 0.070 0.930 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.112 0.888 27 H 0.122 0.878 28 H 0.088 0.912 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.136 5.782 -1.443 6.066 hybrid contribution -0.042 -1.552 -0.036 1.553 sum 1.095 4.229 -1.478 4.612 Atomic orbital electron populations 1.20065 0.87061 1.02846 1.02237 1.23343 0.95807 0.89956 1.01398 1.76090 0.87901 1.24328 1.21181 1.47363 1.02641 1.02957 1.68970 1.21359 0.85872 0.93134 1.01301 1.18465 0.95878 0.83145 1.10120 1.19285 0.94520 0.92463 1.09130 1.20793 0.97133 0.93104 1.05130 1.17410 0.89916 0.93686 0.91802 1.19403 1.02179 0.91870 1.36127 0.90586 1.25792 0.95923 0.99616 0.92766 1.69842 1.12232 1.37889 1.23036 0.86327 0.79299 0.82350 0.79085 1.18592 1.20216 1.19849 1.20797 0.99951 0.88091 1.04784 1.19727 0.90656 0.94260 1.09535 0.91187 0.90163 0.91694 0.92976 0.91007 0.90935 0.88840 0.87844 0.91150 0.85635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.09 10.48 36.00 0.38 -0.71 15 2 C 0.07 1.60 7.44 -80.11 -0.60 1.00 15 3 N -0.28 -6.17 12.39 34.88 0.43 -5.73 15 4 N -0.43 -9.12 4.04 -65.29 -0.26 -9.39 15 5 C 0.13 1.96 11.38 59.85 0.68 2.64 15 6 C 0.03 0.78 6.87 -83.97 -0.58 0.20 15 7 C -0.13 -2.96 9.89 -39.82 -0.39 -3.35 15 8 C -0.14 -3.34 9.69 -39.30 -0.38 -3.72 15 9 C 0.07 1.97 5.57 -106.84 -0.59 1.38 15 10 C -0.46 -12.16 9.04 -37.80 -0.34 -12.50 15 11 H 0.08 1.90 7.90 -52.49 -0.41 1.49 15 12 C 0.07 1.87 5.14 -17.34 -0.09 1.78 15 13 N -0.80 -20.69 10.96 55.54 0.61 -20.09 15 14 Si 0.90 18.61 29.59 -169.99 -5.03 13.58 15 15 H -0.26 -5.34 7.11 56.52 0.40 -4.94 15 16 H -0.28 -5.63 7.11 56.52 0.40 -5.23 15 17 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 18 C -0.11 -2.98 8.74 -38.42 -0.34 -3.31 15 19 C -0.14 -3.36 6.32 -105.21 -0.66 -4.02 15 20 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 21 H 0.08 1.38 8.14 -51.92 -0.42 0.96 15 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 23 H 0.05 0.73 8.14 -51.93 -0.42 0.30 15 24 H 0.07 0.99 8.14 -51.92 -0.42 0.56 15 25 H 0.07 1.00 8.11 -51.93 -0.42 0.58 15 26 H 0.09 1.78 8.06 -52.49 -0.42 1.36 15 27 H 0.10 2.23 8.06 -52.49 -0.42 1.81 15 28 H 0.28 6.51 8.30 -40.82 -0.34 6.17 15 29 H 0.13 3.35 6.19 -52.49 -0.32 3.03 15 LS Contribution 256.17 15.07 3.86 3.86 Total: -1.00 -29.64 256.17 -6.56 -36.20 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -3.25 Total: 2.17 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -2.92 Total: -20.61 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.78 Total: -35.21 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.64 -6.56 -36.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214414253.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.562 kcal (2) G-P(sol) polarization free energy of solvation -29.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds