Wall clock time and date at job start Mon Mar 30 2020 20:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36565 * 120.27971 * 2 1 4 4 C 1.40154 * 119.69637 * 180.02562 * 3 2 1 5 5 C 1.35349 * 120.12874 * 0.02562 * 4 3 2 6 6 C 1.50695 * 119.71171 * 179.97438 * 5 4 3 7 7 N 1.36248 * 120.57311 * 359.97438 * 5 4 3 8 8 C 1.38479 * 132.44300 * 179.97438 * 7 5 4 9 9 C 1.39816 * 126.89873 * 0.02562 * 8 7 5 10 10 H 1.07997 * 119.99862 * 338.85243 * 9 8 7 11 11 C 1.39880 * 119.99794 * 158.85741 * 9 8 7 12 12 N 1.31028 * 120.00123 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99958 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47076 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47391 * 119.99590 * 13 11 9 16 16 H 1.48502 * 109.46666 * 239.99672 * 13 11 9 17 17 C 1.40082 * 106.20147 * 180.02562 * 8 7 5 18 18 N 1.32032 * 108.11515 * 0.02562 * 17 8 7 19 19 C 1.33396 * 110.02478 * 359.97438 * 18 17 8 20 20 H 1.09001 * 109.47450 * 89.99978 * 1 2 3 21 21 H 1.08998 * 109.47337 * 209.99690 * 1 2 3 22 22 H 1.09000 * 109.46778 * 330.00156 * 1 2 3 23 23 H 1.07996 * 120.15390 * 0.02562 * 3 2 1 24 24 H 1.07998 * 119.94119 * 180.02562 * 4 3 2 25 25 H 1.08999 * 109.47170 * 263.85759 * 6 5 4 26 26 H 1.09001 * 109.47463 * 23.85779 * 6 5 4 27 27 H 1.08998 * 109.47127 * 143.85731 * 6 5 4 28 28 H 0.97001 * 120.00410 * 180.02562 * 12 11 9 29 29 H 1.08007 * 125.94324 * 179.73763 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.1793 0.0000 4 6 3.5971 1.1651 -0.0005 5 6 4.2645 -0.0124 -0.0016 6 6 5.7714 -0.0168 -0.0028 7 7 3.5857 -1.1938 -0.0016 8 6 4.0061 -2.5132 -0.0030 9 6 5.3263 -2.9735 -0.0043 10 1 6.1232 -2.3274 -0.3418 11 6 5.6150 -4.2710 0.4314 12 7 4.6483 -5.0548 0.8412 13 14 7.3789 -4.8859 0.4303 14 1 8.2760 -3.8154 -0.0746 15 1 7.7759 -5.2535 1.8131 16 1 7.4871 -6.0776 -0.4492 17 6 2.8431 -3.2940 -0.0028 18 7 1.8028 -2.4810 -0.0019 19 6 2.2147 -1.2122 -0.0010 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6627 2.1187 0.0004 24 1 4.1456 2.0954 -0.0001 25 1 6.1337 -0.1273 -1.0248 26 1 6.1379 0.9218 0.4130 27 1 6.1328 -0.8480 0.6027 28 1 4.8485 -5.9545 1.1437 29 1 2.8042 -4.3734 -0.0076 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238461226.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:15 Heat of formation + Delta-G solvation = 63.606472 kcal Electronic energy + Delta-G solvation = -14143.226174 eV Core-core repulsion = 11838.691206 eV Total energy + Delta-G solvation = -2304.534968 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.00544 -36.32823 -34.26331 -33.35645 -30.03055 -29.03415 -28.38198 -25.24807 -23.96545 -21.42728 -21.09666 -19.53900 -17.19672 -15.83493 -15.57448 -14.71435 -14.56050 -14.25751 -13.20437 -12.80345 -12.69818 -12.34873 -12.33239 -12.02305 -11.89171 -11.58297 -11.38509 -10.95694 -10.74369 -10.42455 -10.23721 -10.19678 -9.58387 -9.19713 -8.48617 -7.32994 -6.82844 -6.74003 -4.25771 1.87979 2.51897 3.00303 3.01932 3.06218 3.79616 4.11979 4.15597 4.81707 5.15989 5.36158 5.51010 5.76701 5.79532 5.87375 6.09767 6.14263 6.18604 6.27110 6.48851 6.54017 6.80486 6.97295 7.07450 7.14171 7.29259 7.42361 7.61428 7.95194 8.25918 8.57081 8.70716 8.85719 9.58564 10.18399 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.040596 B = 0.010405 C = 0.008386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.553733 B = 2690.465584 C = 3338.090414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.025 4.025 3 C -0.172 4.172 4 C -0.182 4.182 5 C 0.105 3.895 6 C -0.119 4.119 7 N -0.397 5.397 8 C 0.160 3.840 9 C -0.445 4.445 10 H 0.085 0.915 11 C 0.072 3.928 12 N -0.803 5.803 13 Si 0.925 3.075 14 H -0.262 1.262 15 H -0.273 1.273 16 H -0.272 1.272 17 C -0.049 4.049 18 N -0.477 5.477 19 C 0.103 3.897 20 H 0.063 0.937 21 H 0.070 0.930 22 H 0.057 0.943 23 H 0.115 0.885 24 H 0.124 0.876 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.282 0.718 29 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.625 6.447 -0.718 6.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.028 4.028 3 C -0.195 4.195 4 C -0.205 4.205 5 C 0.001 3.999 6 C -0.176 4.176 7 N -0.078 5.078 8 C 0.049 3.951 9 C -0.480 4.480 10 H 0.103 0.897 11 C -0.145 4.145 12 N -0.431 5.431 13 Si 0.750 3.250 14 H -0.186 1.186 15 H -0.198 1.198 16 H -0.197 1.197 17 C -0.203 4.203 18 N -0.196 5.196 19 C -0.131 4.131 20 H 0.081 0.919 21 H 0.089 0.911 22 H 0.076 0.924 23 H 0.133 0.867 24 H 0.142 0.858 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 0.737 5.942 -0.628 6.020 hybrid contribution 1.676 -0.058 0.050 1.678 sum 2.413 5.884 -0.578 6.386 Atomic orbital electron populations 1.20520 0.91110 1.02039 1.01604 1.18685 0.95230 0.89448 0.99406 1.20317 0.93512 0.96378 1.09268 1.20067 0.94417 0.95350 1.10677 1.19976 0.94115 0.84866 1.00905 1.21043 0.89882 1.03553 1.03076 1.42668 1.07919 1.05123 1.52052 1.19154 0.96276 0.78273 1.01390 1.18559 0.91154 0.98493 1.39815 0.89712 1.25722 0.99793 0.96005 0.92962 1.69774 1.33411 1.07979 1.31896 0.85972 0.81023 0.79328 0.78691 1.18583 1.19837 1.19705 1.23155 0.85693 0.99082 1.12404 1.69878 1.32770 0.98114 1.18834 1.19850 0.80399 0.93710 1.19174 0.91866 0.91118 0.92408 0.86693 0.85804 0.91183 0.91329 0.88984 0.90751 0.80090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.67 10.01 36.01 0.36 -1.31 15 2 C -0.03 -0.54 5.90 -104.43 -0.62 -1.16 15 3 C -0.17 -3.27 9.73 -39.47 -0.38 -3.66 15 4 C -0.18 -3.46 9.59 -39.89 -0.38 -3.84 15 5 C 0.10 2.27 6.79 -81.66 -0.55 1.71 15 6 C -0.12 -2.13 8.71 36.00 0.31 -1.82 15 7 N -0.40 -10.17 2.98 -55.84 -0.17 -10.34 15 8 C 0.16 4.37 6.66 -83.58 -0.56 3.81 15 9 C -0.45 -11.41 8.01 -38.38 -0.31 -11.72 15 10 H 0.08 2.02 5.53 -52.49 -0.29 1.73 15 11 C 0.07 1.76 5.48 -17.28 -0.09 1.67 15 12 N -0.80 -20.42 10.77 55.55 0.60 -19.82 15 13 Si 0.93 18.13 29.56 -169.99 -5.03 13.11 15 14 H -0.26 -5.00 7.11 56.52 0.40 -4.60 15 15 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 16 H -0.27 -5.26 7.11 56.52 0.40 -4.85 15 17 C -0.05 -1.36 10.72 -16.77 -0.18 -1.54 15 18 N -0.48 -13.09 11.18 -11.84 -0.13 -13.23 15 19 C 0.10 2.65 7.48 -155.50 -1.16 1.48 15 20 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 21 H 0.07 1.31 8.07 -51.93 -0.42 0.90 15 22 H 0.06 0.83 8.09 -51.93 -0.42 0.41 15 23 H 0.12 1.79 8.06 -52.49 -0.42 1.36 15 24 H 0.12 1.89 8.02 -52.49 -0.42 1.47 15 25 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 26 H 0.07 0.99 8.00 -51.93 -0.42 0.57 15 27 H 0.09 1.81 5.78 -51.93 -0.30 1.51 15 28 H 0.28 6.48 8.30 -40.82 -0.34 6.14 15 29 H 0.18 5.11 6.38 -52.48 -0.33 4.77 15 LS Contribution 247.41 15.07 3.73 3.73 Total: -1.00 -29.47 247.41 -7.57 -37.03 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -3.00 Total: 5.88 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -3.57 Total: -16.37 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.30 Total: -43.38 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.47 -7.57 -37.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238461226.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.639 kcal (2) G-P(sol) polarization free energy of solvation -29.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds