Wall clock time and date at job start Mon Mar 30 2020 20:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36565 * 120.27971 * 2 1 4 4 C 1.40154 * 119.69637 * 180.02562 * 3 2 1 5 5 C 1.35349 * 120.12874 * 0.02562 * 4 3 2 6 6 C 1.50695 * 119.71171 * 179.97438 * 5 4 3 7 7 N 1.36248 * 120.57311 * 359.97438 * 5 4 3 8 8 C 1.38479 * 132.44300 * 179.97438 * 7 5 4 9 9 C 1.39816 * 126.89873 * 0.02562 * 8 7 5 10 10 H 1.07997 * 119.99862 * 338.85243 * 9 8 7 11 11 C 1.39880 * 119.99794 * 158.85741 * 9 8 7 12 12 N 1.31028 * 120.00123 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99958 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47076 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47391 * 119.99590 * 13 11 9 16 16 H 1.48502 * 109.46666 * 239.99672 * 13 11 9 17 17 C 1.40082 * 106.20147 * 180.02562 * 8 7 5 18 18 N 1.32032 * 108.11515 * 0.02562 * 17 8 7 19 19 C 1.33396 * 110.02478 * 359.97438 * 18 17 8 20 20 H 1.09001 * 109.47450 * 89.99978 * 1 2 3 21 21 H 1.08998 * 109.47337 * 209.99690 * 1 2 3 22 22 H 1.09000 * 109.46778 * 330.00156 * 1 2 3 23 23 H 1.07996 * 120.15390 * 0.02562 * 3 2 1 24 24 H 1.07998 * 119.94119 * 180.02562 * 4 3 2 25 25 H 1.08999 * 109.47170 * 263.85759 * 6 5 4 26 26 H 1.09001 * 109.47463 * 23.85779 * 6 5 4 27 27 H 1.08998 * 109.47127 * 143.85731 * 6 5 4 28 28 H 0.97001 * 120.00410 * 180.02562 * 12 11 9 29 29 H 1.08007 * 125.94324 * 179.73763 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.1793 0.0000 4 6 3.5971 1.1651 -0.0005 5 6 4.2645 -0.0124 -0.0016 6 6 5.7714 -0.0168 -0.0028 7 7 3.5857 -1.1938 -0.0016 8 6 4.0061 -2.5132 -0.0030 9 6 5.3263 -2.9735 -0.0043 10 1 6.1232 -2.3274 -0.3418 11 6 5.6150 -4.2710 0.4314 12 7 4.6483 -5.0548 0.8412 13 14 7.3789 -4.8859 0.4303 14 1 8.2760 -3.8154 -0.0746 15 1 7.7759 -5.2535 1.8131 16 1 7.4871 -6.0776 -0.4492 17 6 2.8431 -3.2940 -0.0028 18 7 1.8028 -2.4810 -0.0019 19 6 2.2147 -1.2122 -0.0010 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6627 2.1187 0.0004 24 1 4.1456 2.0954 -0.0001 25 1 6.1337 -0.1273 -1.0248 26 1 6.1379 0.9218 0.4130 27 1 6.1328 -0.8480 0.6027 28 1 4.8485 -5.9545 1.1437 29 1 2.8042 -4.3734 -0.0076 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238461226.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:14 Heat of formation + Delta-G solvation = 46.578295 kcal Electronic energy + Delta-G solvation = -14143.964571 eV Core-core repulsion = 11838.691206 eV Total energy + Delta-G solvation = -2305.273366 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.83964 -38.03770 -35.99277 -35.10177 -31.78796 -30.69439 -30.05928 -27.02509 -25.54675 -23.20564 -22.88858 -21.38681 -18.99971 -17.65449 -17.25562 -16.46435 -16.29591 -15.80246 -14.85383 -14.36253 -14.20843 -13.94765 -13.89139 -13.81014 -13.35320 -13.28617 -12.98062 -12.46059 -12.27220 -12.06831 -11.90289 -11.84018 -11.37509 -10.91597 -10.44775 -9.18206 -8.64935 -8.54123 -6.18681 0.22840 0.81361 1.40128 1.45868 1.56623 2.13487 2.32322 2.40193 2.99509 3.23660 3.81108 3.95707 4.23992 4.31066 4.38337 4.70384 4.79110 4.83481 4.87273 4.95013 5.03272 5.13878 5.24531 5.38664 5.48465 5.50962 5.67662 5.83996 6.19923 6.37139 6.60387 6.81356 7.02761 7.63773 8.40169 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.040596 B = 0.010405 C = 0.008386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.553733 B = 2690.465584 C = 3338.090414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.068 4.068 3 C -0.136 4.136 4 C -0.171 4.171 5 C 0.069 3.931 6 C -0.113 4.113 7 N -0.407 5.407 8 C 0.131 3.869 9 C -0.468 4.468 10 H 0.098 0.902 11 C 0.026 3.974 12 N -0.841 5.841 13 Si 1.003 2.997 14 H -0.249 1.249 15 H -0.268 1.268 16 H -0.267 1.267 17 C -0.096 4.096 18 N -0.515 5.515 19 C 0.099 3.901 20 H 0.073 0.927 21 H 0.047 0.953 22 H 0.096 0.904 23 H 0.166 0.834 24 H 0.175 0.825 25 H 0.076 0.924 26 H 0.112 0.888 27 H 0.068 0.932 28 H 0.287 0.713 29 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.911 9.913 -0.788 10.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.071 4.071 3 C -0.159 4.159 4 C -0.193 4.193 5 C -0.034 4.034 6 C -0.170 4.170 7 N -0.087 5.087 8 C 0.020 3.980 9 C -0.502 4.502 10 H 0.115 0.885 11 C -0.187 4.187 12 N -0.469 5.469 13 Si 0.823 3.177 14 H -0.172 1.172 15 H -0.193 1.193 16 H -0.192 1.192 17 C -0.247 4.247 18 N -0.235 5.235 19 C -0.139 4.139 20 H 0.092 0.908 21 H 0.066 0.934 22 H 0.115 0.885 23 H 0.184 0.816 24 H 0.193 0.807 25 H 0.095 0.905 26 H 0.130 0.870 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.034 9.392 -0.702 9.636 hybrid contribution 1.166 -0.834 0.072 1.435 sum 3.200 8.558 -0.630 9.158 Atomic orbital electron populations 1.20523 0.88653 1.02812 1.02505 1.19269 0.97350 0.88677 1.01804 1.21034 0.93885 0.97291 1.03695 1.20790 0.94856 0.96167 1.07500 1.20908 0.96213 0.84412 1.01832 1.21069 0.87604 1.04904 1.03376 1.42935 1.08209 1.05833 1.51751 1.19407 0.96652 0.79272 1.02646 1.18920 0.90899 0.99616 1.40810 0.88457 1.26811 1.04394 0.95654 0.91890 1.69895 1.35869 1.08543 1.32618 0.84828 0.75176 0.78858 0.78824 1.17244 1.19290 1.19193 1.22919 0.86998 0.98708 1.16121 1.69768 1.33045 0.99277 1.21405 1.20761 0.81315 0.94556 1.17282 0.90840 0.93431 0.88509 0.81634 0.80724 0.90537 0.86991 0.91305 0.90211 0.82041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.89 10.01 71.24 0.71 -2.18 15 2 C -0.07 -2.81 5.90 -19.74 -0.12 -2.92 15 3 C -0.14 -4.49 9.73 22.34 0.22 -4.27 15 4 C -0.17 -5.63 9.59 22.07 0.21 -5.41 15 5 C 0.07 2.83 6.79 41.20 0.28 3.11 15 6 C -0.11 -3.77 8.71 71.23 0.62 -3.15 15 7 N -0.41 -21.14 2.98 -330.59 -0.99 -22.13 15 8 C 0.13 7.51 6.66 38.92 0.26 7.77 15 9 C -0.47 -24.86 8.01 23.05 0.18 -24.68 15 10 H 0.10 4.71 5.53 -2.91 -0.02 4.69 15 11 C 0.03 1.29 5.48 85.21 0.47 1.76 15 12 N -0.84 -45.25 10.77 21.83 0.24 -45.01 15 13 Si 1.00 37.55 29.56 68.60 2.03 39.58 15 14 H -0.25 -8.71 7.11 99.48 0.71 -8.00 15 15 H -0.27 -9.72 7.11 99.48 0.71 -9.01 15 16 H -0.27 -9.70 7.11 99.48 0.71 -8.99 15 17 C -0.10 -5.81 10.72 85.11 0.91 -4.89 15 18 N -0.51 -30.00 11.18 -191.38 -2.14 -32.14 15 19 C 0.10 5.18 7.48 133.70 1.00 6.18 15 20 H 0.07 2.23 8.14 -2.39 -0.02 2.21 15 21 H 0.05 1.76 8.07 -2.39 -0.02 1.75 15 22 H 0.10 2.38 8.09 -2.39 -0.02 2.36 15 23 H 0.17 3.84 8.06 -2.91 -0.02 3.82 15 24 H 0.18 3.99 8.02 -2.91 -0.02 3.96 15 25 H 0.08 2.43 8.14 -2.39 -0.02 2.41 15 26 H 0.11 2.69 8.00 -2.39 -0.02 2.67 15 27 H 0.07 2.64 5.78 -2.39 -0.01 2.63 15 28 H 0.29 13.93 8.30 -92.71 -0.77 13.16 15 29 H 0.16 10.08 6.38 -2.91 -0.02 10.06 15 Total: -1.00 -69.71 247.41 5.05 -64.66 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 1.16 Total: 23.71 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: 4.75 Total: -28.68 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -2.89 Total: -99.27 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Total: -69.71 5.05 -64.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238461226.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.243 kcal (2) G-P(sol) polarization free energy of solvation -69.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds