Wall clock time and date at job start Mon Mar 30 2020 20:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38388 * 119.92127 * 2 1 4 4 C 1.38343 * 120.30271 * 179.72293 * 3 2 1 5 5 C 1.37966 * 120.15137 * 0.54887 * 4 3 2 6 6 C 1.50701 * 120.07579 * 179.74658 * 5 4 3 7 7 H 1.09002 * 109.47060 * 144.72571 * 6 5 4 8 8 N 1.46901 * 109.46921 * 24.72390 * 6 5 4 9 9 C 1.50699 * 109.47269 * 264.72424 * 6 5 4 10 10 H 1.08000 * 119.99792 * 0.02562 * 9 6 5 11 11 C 1.37878 * 119.99902 * 179.97438 * 9 6 5 12 12 N 1.31515 * 120.00126 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 119.99745 * 180.02562 * 11 9 6 14 14 H 1.48496 * 109.47319 * 60.00570 * 13 11 9 15 15 H 1.48503 * 109.46734 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47266 * 300.00384 * 13 11 9 17 17 C 1.39607 * 119.84741 * 359.47648 * 5 4 3 18 18 C 1.43198 * 120.15402 * 180.23226 * 17 5 4 19 19 N 4.80114 * 134.70923 * 180.02562 * 2 1 3 20 20 C 1.37922 * 119.92759 * 180.02562 * 2 1 3 21 21 H 1.08996 * 109.47190 * 269.97749 * 1 2 3 22 22 H 1.08999 * 109.47337 * 29.98335 * 1 2 3 23 23 H 1.09008 * 109.46524 * 149.98152 * 1 2 3 24 24 H 1.07995 * 119.84770 * 359.97438 * 3 2 1 25 25 H 1.07997 * 119.92176 * 180.27332 * 4 3 2 26 26 H 1.00898 * 111.00245 * 299.99784 * 8 6 5 27 27 H 1.00904 * 111.00313 * 63.95601 * 8 6 5 28 28 H 0.96999 * 120.00073 * 179.97438 * 12 11 9 29 29 H 1.08002 * 120.07857 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1994 0.0000 4 6 3.5807 1.2086 0.0058 5 6 4.2816 0.0203 0.0002 6 6 5.7886 0.0324 0.0007 7 1 6.1584 -0.8066 0.5902 8 7 6.2679 1.2915 0.5863 9 6 6.2924 -0.0873 -1.4145 10 1 5.5915 -0.1639 -2.2326 11 6 7.6482 -0.0978 -1.6650 12 7 8.5017 -0.0040 -0.6689 13 14 8.2727 -0.2454 -3.4194 14 1 7.7686 0.8976 -4.2221 15 1 9.7577 -0.2336 -3.4187 16 1 7.7884 -1.5181 -4.0118 17 6 3.5917 -1.1933 -0.0003 18 6 4.3126 -2.4306 -0.0011 19 7 4.8846 -3.4121 -0.0015 20 6 2.1951 -1.1953 -0.0005 21 1 -0.3633 -0.0004 1.0276 22 1 -0.3634 0.8901 -0.5136 23 1 -0.3633 -0.8899 -0.5142 24 1 1.6535 2.1325 -0.0004 25 1 4.1131 2.1482 0.0102 26 1 5.9383 2.0849 0.0574 27 1 5.9976 1.3655 1.5556 28 1 9.4556 -0.0117 -0.8451 29 1 1.6552 -2.1307 -0.0014 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238487238.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:29 Heat of formation + Delta-G solvation = 28.196327 kcal Electronic energy + Delta-G solvation = -13703.697801 eV Core-core repulsion = 11397.627334 eV Total energy + Delta-G solvation = -2306.070468 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.68122 -37.41452 -36.68729 -34.01323 -32.64327 -31.79764 -28.62209 -27.14631 -24.70186 -23.97928 -21.64779 -18.92849 -18.57123 -16.98763 -16.80053 -16.29228 -15.83375 -15.19366 -15.01182 -14.35988 -14.27751 -14.14185 -14.04707 -13.81109 -13.37466 -13.01164 -12.83444 -12.70279 -12.47026 -12.36849 -11.92721 -11.64930 -11.31344 -10.59604 -9.81392 -9.33947 -8.92638 -8.02677 -6.24543 -0.04097 0.51776 1.38403 1.40348 1.46717 1.76635 2.06109 2.42023 3.00146 3.10482 3.21350 4.00186 4.04686 4.20539 4.33493 4.53085 4.54099 4.77352 4.99314 5.02113 5.05721 5.23354 5.39502 5.45294 5.64687 5.68649 5.72314 6.04456 6.13174 6.57481 6.63031 7.08517 7.25920 7.48138 9.00154 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.032273 B = 0.009239 C = 0.008545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.392719 B = 3029.996179 C = 3275.879192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.104 4.104 3 C -0.075 4.075 4 C -0.132 4.132 5 C -0.056 4.056 6 C 0.257 3.743 7 H 0.001 0.999 8 N -0.820 5.820 9 C -0.540 4.540 10 H 0.047 0.953 11 C 0.036 3.964 12 N -0.878 5.878 13 Si 0.942 3.058 14 H -0.263 1.263 15 H -0.284 1.284 16 H -0.283 1.283 17 C -0.057 4.057 18 C 0.281 3.719 19 N -0.478 5.478 20 C -0.068 4.068 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.073 0.927 24 H 0.161 0.839 25 H 0.134 0.866 26 H 0.330 0.670 27 H 0.315 0.685 28 H 0.255 0.745 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.933 4.867 1.550 17.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.104 4.104 3 C -0.094 4.094 4 C -0.151 4.151 5 C -0.061 4.061 6 C 0.146 3.854 7 H 0.019 0.981 8 N -0.348 5.348 9 C -0.579 4.579 10 H 0.065 0.935 11 C -0.168 4.168 12 N -0.514 5.514 13 Si 0.768 3.232 14 H -0.187 1.187 15 H -0.210 1.210 16 H -0.209 1.209 17 C -0.061 4.061 18 C -0.033 4.033 19 N -0.154 5.154 20 C -0.089 4.089 21 H 0.102 0.898 22 H 0.102 0.898 23 H 0.092 0.908 24 H 0.178 0.822 25 H 0.152 0.848 26 H 0.145 0.855 27 H 0.127 0.873 28 H 0.064 0.936 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.091 3.087 1.452 15.472 hybrid contribution 0.015 0.152 -0.712 0.729 sum -15.077 3.239 0.740 15.438 Atomic orbital electron populations 1.20805 0.87838 1.04044 1.03502 1.20107 0.98015 0.91648 1.00674 1.21581 0.92954 0.99196 0.95660 1.21053 0.95034 0.96937 1.02037 1.21533 0.98915 0.92562 0.93138 1.17825 0.83750 0.89458 0.94336 0.98095 1.58846 1.68098 1.03798 1.04107 1.21003 0.91576 1.53457 0.91822 0.93507 1.25654 0.97354 0.93986 0.99820 1.70211 1.01596 1.47578 1.32003 0.85888 0.77188 0.78610 0.81516 1.18713 1.20976 1.20858 1.16144 0.93177 0.85810 1.11016 1.26109 0.92213 0.92777 0.92160 1.81071 1.08945 1.14298 1.11084 1.21219 0.90131 1.00081 0.97449 0.89838 0.89836 0.90773 0.82160 0.84811 0.85538 0.87278 0.93588 0.83631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 10.01 71.24 0.71 -0.66 15 2 C -0.10 -2.26 5.87 -19.90 -0.12 -2.38 15 3 C -0.08 -1.70 9.69 22.33 0.22 -1.49 15 4 C -0.13 -4.04 9.26 22.23 0.21 -3.84 15 5 C -0.06 -2.22 5.02 -19.60 -0.10 -2.32 15 6 C 0.26 12.73 2.37 43.42 0.10 12.83 15 7 H 0.00 0.07 7.28 -2.39 -0.02 0.06 15 8 N -0.82 -37.15 8.13 -174.95 -1.42 -38.57 15 9 C -0.54 -29.98 8.71 25.60 0.22 -29.76 15 10 H 0.05 2.60 7.74 -2.91 -0.02 2.57 15 11 C 0.04 2.04 5.39 84.65 0.46 2.50 15 12 N -0.88 -52.86 12.77 21.45 0.27 -52.58 15 13 Si 0.94 45.14 29.54 68.60 2.03 47.17 15 14 H -0.26 -11.90 7.11 99.48 0.71 -11.19 15 15 H -0.28 -13.39 7.11 99.48 0.71 -12.69 15 16 H -0.28 -13.64 7.11 99.48 0.71 -12.94 15 17 C -0.06 -2.13 5.73 -21.36 -0.12 -2.25 15 18 C 0.28 12.25 13.89 88.33 1.23 13.48 15 19 N -0.48 -22.75 18.54 19.00 0.35 -22.40 15 20 C -0.07 -1.85 9.40 22.54 0.21 -1.64 15 21 H 0.08 0.89 8.14 -2.39 -0.02 0.87 15 22 H 0.08 0.84 8.08 -2.39 -0.02 0.82 15 23 H 0.07 0.87 8.08 -2.38 -0.02 0.85 15 24 H 0.16 2.38 8.06 -2.91 -0.02 2.36 15 25 H 0.13 3.82 6.28 -2.91 -0.02 3.80 15 26 H 0.33 13.59 7.21 -89.70 -0.65 12.95 15 27 H 0.32 12.56 9.06 -89.69 -0.81 11.75 15 28 H 0.26 14.77 8.31 -92.71 -0.77 14.00 15 29 H 0.15 3.21 8.06 -2.91 -0.02 3.19 15 Total: -1.00 -69.48 261.94 3.98 -65.51 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -0.27 Total: 16.40 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 3.02 Total: -15.53 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -0.80 Total: -113.56 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -69.48 3.98 -65.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238487238.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.704 kcal (2) G-P(sol) polarization free energy of solvation -69.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds