Wall clock time and date at job start Mon Mar 30 2020 20:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38388 * 119.92351 * 2 1 4 4 C 1.38334 * 120.30404 * 179.97438 * 3 2 1 5 5 C 1.37965 * 120.15361 * 359.97438 * 4 3 2 6 6 C 1.39619 * 119.84515 * 359.76943 * 5 4 3 7 7 C 1.43200 * 120.15155 * 180.25683 * 6 5 4 8 8 N 4.80107 * 134.70472 * 179.68451 * 2 1 3 9 9 C 1.37917 * 119.92416 * 179.97438 * 2 1 3 10 10 C 1.50702 * 120.07759 * 0.03206 * 9 2 1 11 11 H 1.09000 * 109.47067 * 348.71249 * 10 9 2 12 12 N 1.46905 * 109.46939 * 228.71239 * 10 9 2 13 13 C 1.50699 * 109.47238 * 108.71503 * 10 9 2 14 14 H 1.07997 * 120.00308 * 359.97438 * 13 10 9 15 15 C 1.37877 * 120.00104 * 180.02562 * 13 10 9 16 16 N 1.31523 * 119.99919 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00198 * 179.97438 * 15 13 10 18 18 H 1.48492 * 109.46799 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47204 * 120.00008 * 17 15 13 20 20 H 1.48506 * 109.46919 * 239.99906 * 17 15 13 21 21 H 1.09003 * 109.47641 * 270.02730 * 1 2 3 22 22 H 1.09003 * 109.47093 * 30.03049 * 1 2 3 23 23 H 1.09000 * 109.47107 * 150.02077 * 1 2 3 24 24 H 1.07997 * 119.84477 * 359.94729 * 3 2 1 25 25 H 1.07999 * 119.92348 * 179.97438 * 4 3 2 26 26 H 1.08001 * 120.08169 * 180.02562 * 5 4 3 27 27 H 1.00906 * 110.99885 * 169.13174 * 12 10 9 28 28 H 1.00900 * 110.99950 * 293.08876 * 12 10 9 29 29 H 0.96998 * 120.00187 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1994 0.0000 4 6 3.5807 1.2086 0.0005 5 6 4.2816 0.0203 0.0016 6 6 3.5915 -1.1935 0.0070 7 6 4.3125 -2.4307 0.0137 8 7 4.8843 -3.4123 0.0188 9 6 2.1950 -1.1953 0.0005 10 6 1.4415 -2.5004 0.0004 11 1 0.3870 -2.3112 0.2010 12 7 1.9877 -3.3812 1.0415 13 6 1.5858 -3.1637 -1.3451 14 1 2.1648 -2.6876 -2.1225 15 6 0.9778 -4.3778 -1.5840 16 7 0.2714 -4.9570 -0.6377 17 14 1.1560 -5.1996 -3.2520 18 1 1.9929 -4.3490 -4.1359 19 1 1.8025 -6.5259 -3.0839 20 1 -0.1861 -5.3769 -3.8624 21 1 -0.3634 0.0005 1.0277 22 1 -0.3633 0.8897 -0.5143 23 1 -0.3633 -0.8902 -0.5135 24 1 1.6536 2.1325 -0.0009 25 1 4.1132 2.1482 0.0001 26 1 5.3616 0.0288 0.0024 27 1 1.3943 -4.1850 1.1831 28 1 2.9308 -3.6627 0.8189 29 1 -0.1561 -5.8114 -0.8056 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238500343.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:35 Heat of formation + Delta-G solvation = 29.614270 kcal Electronic energy + Delta-G solvation = -14064.003255 eV Core-core repulsion = 11757.994274 eV Total energy + Delta-G solvation = -2306.008981 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.72034 -37.54766 -36.46754 -33.85048 -33.31689 -31.24069 -28.16358 -27.59698 -25.34967 -23.47786 -21.34432 -19.04421 -18.67643 -17.41393 -16.73072 -16.19793 -15.60169 -15.21288 -14.83808 -14.67140 -14.19462 -14.01798 -13.83009 -13.78717 -13.13645 -13.07487 -12.86333 -12.67146 -12.51464 -12.46344 -12.04641 -11.89367 -11.24254 -10.70641 -9.57802 -9.49037 -9.22829 -8.20735 -6.43319 0.04828 0.62130 1.26975 1.31054 1.40674 1.81919 2.14243 2.29400 2.97711 3.10569 3.18101 4.06214 4.12386 4.24906 4.51568 4.53345 4.69540 4.87973 4.95764 5.01969 5.13558 5.33567 5.44587 5.53321 5.56887 5.66069 5.85673 6.05066 6.17513 6.55735 6.63560 6.81974 6.93957 7.30257 8.75243 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.029025 B = 0.011470 C = 0.009931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.467992 B = 2440.601927 C = 2818.880598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.107 4.107 3 C -0.080 4.080 4 C -0.125 4.125 5 C -0.077 4.077 6 C -0.059 4.059 7 C 0.291 3.709 8 N -0.479 5.479 9 C -0.014 4.014 10 C 0.228 3.772 11 H 0.045 0.955 12 N -0.853 5.853 13 C -0.551 4.551 14 H 0.043 0.957 15 C 0.025 3.975 16 N -0.912 5.912 17 Si 0.947 3.053 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.269 1.269 21 H 0.073 0.927 22 H 0.093 0.907 23 H 0.048 0.952 24 H 0.163 0.837 25 H 0.171 0.829 26 H 0.148 0.852 27 H 0.341 0.659 28 H 0.315 0.685 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.248 14.194 0.559 14.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.108 4.108 3 C -0.098 4.098 4 C -0.143 4.143 5 C -0.098 4.098 6 C -0.063 4.063 7 C -0.021 4.021 8 N -0.157 5.157 9 C -0.017 4.017 10 C 0.118 3.882 11 H 0.063 0.937 12 N -0.385 5.385 13 C -0.591 4.591 14 H 0.061 0.939 15 C -0.176 4.176 16 N -0.552 5.552 17 Si 0.773 3.227 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.194 1.194 21 H 0.092 0.908 22 H 0.111 0.889 23 H 0.067 0.933 24 H 0.181 0.819 25 H 0.189 0.811 26 H 0.166 0.834 27 H 0.154 0.846 28 H 0.128 0.872 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.915 13.139 1.101 13.504 hybrid contribution -0.260 -1.723 -1.612 2.374 sum 2.655 11.416 -0.511 11.732 Atomic orbital electron populations 1.20804 0.90365 1.03022 1.02593 1.19953 0.97240 0.92079 1.01488 1.21606 0.94803 0.97439 0.95995 1.21368 0.94018 0.98169 1.00736 1.21381 1.00834 0.90154 0.97406 1.16164 0.91857 0.87477 1.10778 1.25977 0.91327 0.92976 0.91865 1.81056 1.12408 1.10820 1.11370 1.20297 0.91979 0.96458 0.92955 1.18132 0.94139 0.87219 0.88720 0.93723 1.59728 1.06649 1.24477 1.47603 1.21959 1.32234 1.05214 0.99679 0.93896 1.25655 0.94188 0.97698 1.00068 1.69847 1.33635 1.17713 1.34003 0.85670 0.78283 0.78131 0.80637 1.19760 1.21223 1.19357 0.90835 0.88865 0.93306 0.81916 0.81118 0.83412 0.84570 0.87175 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.33 9.26 71.24 0.66 -2.67 15 2 C -0.11 -3.50 5.87 -19.90 -0.12 -3.62 15 3 C -0.08 -1.87 9.69 22.33 0.22 -1.65 15 4 C -0.13 -2.66 10.03 22.23 0.22 -2.44 15 5 C -0.08 -2.13 9.76 22.54 0.22 -1.91 15 6 C -0.06 -2.27 5.64 -21.36 -0.12 -2.39 15 7 C 0.29 12.83 11.59 88.33 1.02 13.85 15 8 N -0.48 -22.58 17.60 19.00 0.33 -22.24 15 9 C -0.01 -0.56 4.92 -19.60 -0.10 -0.66 15 10 C 0.23 11.42 2.44 43.42 0.11 11.52 15 11 H 0.04 2.36 5.77 -2.39 -0.01 2.35 15 12 N -0.85 -44.17 8.92 -174.94 -1.56 -45.73 15 13 C -0.55 -30.32 7.86 25.60 0.20 -30.12 15 14 H 0.04 2.42 7.74 -2.91 -0.02 2.40 15 15 C 0.02 1.36 5.39 84.65 0.46 1.82 15 16 N -0.91 -51.73 11.65 21.45 0.25 -51.48 15 17 Si 0.95 44.74 29.54 68.60 2.03 46.77 15 18 H -0.27 -12.82 7.11 99.48 0.71 -12.11 15 19 H -0.29 -13.60 7.11 99.48 0.71 -12.89 15 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 15 21 H 0.07 2.05 8.14 -2.39 -0.02 2.03 15 22 H 0.09 2.07 8.08 -2.39 -0.02 2.05 15 23 H 0.05 1.80 6.30 -2.39 -0.02 1.78 15 24 H 0.16 2.45 8.06 -2.91 -0.02 2.43 15 25 H 0.17 2.08 8.06 -2.91 -0.02 2.06 15 26 H 0.15 3.24 8.06 -2.91 -0.02 3.21 15 27 H 0.34 18.82 7.30 -89.69 -0.65 18.17 15 28 H 0.31 16.49 4.95 -89.69 -0.44 16.05 15 29 H 0.27 14.43 8.31 -92.71 -0.77 13.66 15 Total: -1.00 -65.07 252.24 3.91 -61.15 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: 0.09 Total: 29.82 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 2.77 Total: -18.28 kcal Atomic # 7 Polarization: -118.48 SS G_CDS: -0.98 Total: -119.46 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -65.07 3.91 -61.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238500343.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.766 kcal (2) G-P(sol) polarization free energy of solvation -65.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds