Wall clock time and date at job start Mon Mar 30 2020 20:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38383 * 119.84556 * 2 1 4 4 C 1.37927 * 120.14515 * 180.02562 * 3 2 1 5 5 C 1.39645 * 119.85228 * 359.97082 * 4 3 2 6 6 C 1.43198 * 120.15599 * 180.02562 * 5 4 3 7 7 N 4.80113 * 136.85763 * 0.02562 * 3 1 2 8 8 C 1.39610 * 119.69849 * 0.02562 * 5 4 3 9 9 C 1.50700 * 120.07996 * 179.97438 * 8 5 4 10 10 H 1.09004 * 109.47210 * 325.00224 * 9 8 5 11 11 N 1.46899 * 109.47483 * 204.99893 * 9 8 5 12 12 C 1.50702 * 109.46869 * 84.99931 * 9 8 5 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 9 8 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 9 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 9 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.37970 * 119.84765 * 0.25259 * 8 5 4 21 21 H 1.08993 * 109.47060 * 90.00289 * 1 2 3 22 22 H 1.09004 * 109.47369 * 210.00504 * 1 2 3 23 23 H 1.09004 * 109.47224 * 330.00304 * 1 2 3 24 24 H 1.07992 * 119.92872 * 359.97438 * 3 2 1 25 25 H 1.08006 * 120.07210 * 179.97438 * 4 3 2 26 26 H 1.00903 * 111.00048 * 300.00270 * 11 9 8 27 27 H 1.00904 * 110.99882 * 63.95460 * 11 9 8 28 28 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 29 29 H 1.07997 * 119.92691 * 179.74891 * 20 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2003 0.0000 4 6 3.5750 1.2075 -0.0005 5 6 4.2764 0.0000 -0.0005 6 6 5.7084 -0.0001 -0.0005 7 7 6.8444 -0.0001 -0.0015 8 6 3.5752 -1.2072 -0.0004 9 6 4.3234 -2.5153 -0.0009 10 1 5.2344 -2.4126 -0.5906 11 7 3.4768 -3.5636 -0.5860 12 6 4.6809 -2.8901 1.4144 13 1 4.3945 -2.2457 2.2324 14 6 5.3681 -4.0588 1.6655 15 7 5.7166 -4.8436 0.6694 16 14 5.8044 -4.5270 3.4203 17 1 5.3026 -3.4838 4.3504 18 1 5.1777 -5.8310 3.7551 19 1 7.2795 -4.6389 3.5507 20 6 2.1955 -1.2000 -0.0057 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5138 24 1 1.6521 2.1334 -0.0004 25 1 4.1113 2.1450 -0.0010 26 1 2.6254 -3.6781 -0.0568 27 1 3.2765 -3.3675 -1.5553 28 1 6.2004 -5.6656 0.8460 29 1 1.6518 -2.1331 -0.0097 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238542774.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:52 Heat of formation + Delta-G solvation = 48.263012 kcal Electronic energy + Delta-G solvation = -13749.748169 eV Core-core repulsion = 11444.547858 eV Total energy + Delta-G solvation = -2305.200311 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.36293 -35.83225 -34.84136 -32.42468 -31.75131 -29.38527 -27.33371 -26.09693 -23.20472 -21.99450 -20.01823 -18.20128 -16.52501 -15.38470 -15.00804 -14.47439 -14.13866 -13.89179 -13.69992 -13.11267 -13.02778 -12.60482 -12.40283 -12.29419 -11.78641 -11.59810 -11.40729 -11.03066 -10.89723 -10.68462 -10.53586 -9.85626 -9.37615 -8.49148 -8.41076 -8.05797 -7.21242 -5.92263 -4.08317 1.25626 1.80005 3.31959 3.39968 3.41622 3.43314 3.51112 4.36623 4.49843 4.59698 5.03769 5.13349 5.28916 5.32760 5.54982 5.66694 5.71247 5.91815 6.00405 6.17743 6.25557 6.41990 6.60859 6.83501 6.85999 7.27215 7.35017 7.85387 8.07732 8.23036 8.53133 8.90739 9.06411 9.61154 11.12110 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.027822 B = 0.010191 C = 0.008805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.161165 B = 2746.911886 C = 3179.308543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.061 4.061 3 C -0.150 4.150 4 C -0.070 4.070 5 C -0.041 4.041 6 C 0.271 3.729 7 N -0.431 5.431 8 C -0.020 4.020 9 C 0.249 3.751 10 H 0.051 0.949 11 N -0.809 5.809 12 C -0.532 4.532 13 H 0.055 0.945 14 C 0.086 3.914 15 N -0.843 5.843 16 Si 0.885 3.115 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.284 1.284 20 C -0.134 4.134 21 H 0.069 0.931 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.122 0.878 25 H 0.123 0.877 26 H 0.320 0.680 27 H 0.301 0.699 28 H 0.256 0.744 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.547 9.266 -2.084 14.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.062 4.062 3 C -0.168 4.168 4 C -0.091 4.091 5 C -0.045 4.045 6 C -0.044 4.044 7 N -0.106 5.106 8 C -0.025 4.025 9 C 0.139 3.861 10 H 0.069 0.931 11 N -0.335 5.335 12 C -0.571 4.571 13 H 0.074 0.926 14 C -0.121 4.121 15 N -0.477 5.477 16 Si 0.712 3.288 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.152 4.152 21 H 0.088 0.912 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.140 0.860 25 H 0.141 0.859 26 H 0.133 0.867 27 H 0.111 0.889 28 H 0.066 0.934 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.072 8.562 -1.990 11.934 hybrid contribution -0.856 0.425 0.912 1.321 sum -8.928 8.986 -1.078 12.714 Atomic orbital electron populations 1.20818 0.91456 1.02731 1.02144 1.20059 0.95853 0.93250 0.97004 1.20704 0.93427 0.97391 1.05296 1.21037 0.94211 0.96253 0.97605 1.15940 0.84726 0.94325 1.09505 1.25479 0.92601 0.92914 0.93405 1.81098 1.12242 1.08146 1.09160 1.21994 0.94229 0.97705 0.88600 1.18333 0.90936 0.80047 0.96828 0.93147 1.59116 1.21370 1.49963 1.03061 1.20750 1.38716 1.07356 0.90261 0.92630 1.24925 0.94702 0.96094 0.96418 1.70107 1.35941 1.11580 1.30108 0.86674 0.78198 0.78459 0.85458 1.19777 1.20862 1.21011 1.20827 0.93486 0.97562 1.03311 0.91213 0.91383 0.91704 0.86022 0.85898 0.86659 0.88868 0.93362 0.85568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 10.00 36.01 0.36 -0.80 15 2 C -0.06 -0.83 5.89 -104.53 -0.62 -1.45 15 3 C -0.15 -1.95 9.68 -39.64 -0.38 -2.34 15 4 C -0.07 -1.04 9.76 -39.17 -0.38 -1.42 15 5 C -0.04 -0.77 5.73 -106.94 -0.61 -1.38 15 6 C 0.27 5.71 13.89 -22.47 -0.31 5.40 15 7 N -0.43 -9.82 18.54 41.84 0.78 -9.04 15 8 C -0.02 -0.40 5.02 -104.21 -0.52 -0.92 15 9 C 0.25 5.98 2.37 -70.02 -0.17 5.82 15 10 H 0.05 1.39 7.28 -51.93 -0.38 1.01 15 11 N -0.81 -18.04 8.12 -6.65 -0.05 -18.09 15 12 C -0.53 -14.45 8.71 -34.44 -0.30 -14.75 15 13 H 0.06 1.52 7.74 -52.49 -0.41 1.12 15 14 C 0.09 2.41 5.39 -17.82 -0.10 2.32 15 15 N -0.84 -24.65 12.76 55.43 0.71 -23.95 15 16 Si 0.88 21.64 29.54 -169.99 -5.02 16.62 15 17 H -0.27 -6.61 7.11 56.52 0.40 -6.21 15 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 19 H -0.28 -7.00 7.11 56.52 0.40 -6.60 15 20 C -0.13 -2.20 8.91 -39.64 -0.35 -2.56 15 21 H 0.07 0.62 8.14 -51.93 -0.42 0.20 15 22 H 0.07 0.67 8.08 -51.93 -0.42 0.25 15 23 H 0.06 0.56 8.08 -51.93 -0.42 0.14 15 24 H 0.12 1.21 8.06 -52.49 -0.42 0.79 15 25 H 0.12 1.50 8.06 -52.48 -0.42 1.08 15 26 H 0.32 6.61 7.21 -39.29 -0.28 6.33 15 27 H 0.30 5.92 9.06 -39.29 -0.36 5.56 15 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 29 H 0.13 1.97 6.28 -52.49 -0.33 1.64 15 LS Contribution 261.93 15.07 3.95 3.95 Total: -1.00 -30.83 261.93 -6.02 -36.85 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -3.00 Total: 5.74 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -3.38 Total: -12.08 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 1.43 Total: -51.08 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.83 -6.02 -36.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238542774.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.118 kcal (2) G-P(sol) polarization free energy of solvation -30.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds