Wall clock time and date at job start Mon Mar 30 2020 20:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38383 * 119.84556 * 2 1 4 4 C 1.37927 * 120.14515 * 180.02562 * 3 2 1 5 5 C 1.39645 * 119.85228 * 359.97082 * 4 3 2 6 6 C 1.43198 * 120.15599 * 180.02562 * 5 4 3 7 7 N 4.80113 * 136.85763 * 0.02562 * 3 1 2 8 8 C 1.39610 * 119.69849 * 0.02562 * 5 4 3 9 9 C 1.50700 * 120.07996 * 179.97438 * 8 5 4 10 10 H 1.09004 * 109.47210 * 325.00224 * 9 8 5 11 11 N 1.46899 * 109.47483 * 204.99893 * 9 8 5 12 12 C 1.50702 * 109.46869 * 84.99931 * 9 8 5 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 9 8 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 9 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 9 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.37970 * 119.84765 * 0.25259 * 8 5 4 21 21 H 1.08993 * 109.47060 * 90.00289 * 1 2 3 22 22 H 1.09004 * 109.47369 * 210.00504 * 1 2 3 23 23 H 1.09004 * 109.47224 * 330.00304 * 1 2 3 24 24 H 1.07992 * 119.92872 * 359.97438 * 3 2 1 25 25 H 1.08006 * 120.07210 * 179.97438 * 4 3 2 26 26 H 1.00903 * 111.00048 * 300.00270 * 11 9 8 27 27 H 1.00904 * 110.99882 * 63.95460 * 11 9 8 28 28 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 29 29 H 1.07997 * 119.92691 * 179.74891 * 20 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2003 0.0000 4 6 3.5750 1.2075 -0.0005 5 6 4.2764 0.0000 -0.0005 6 6 5.7084 -0.0001 -0.0005 7 7 6.8444 -0.0001 -0.0015 8 6 3.5752 -1.2072 -0.0004 9 6 4.3234 -2.5153 -0.0009 10 1 5.2344 -2.4126 -0.5906 11 7 3.4768 -3.5636 -0.5860 12 6 4.6809 -2.8901 1.4144 13 1 4.3945 -2.2457 2.2324 14 6 5.3681 -4.0588 1.6655 15 7 5.7166 -4.8436 0.6694 16 14 5.8044 -4.5270 3.4203 17 1 5.3026 -3.4838 4.3504 18 1 5.1777 -5.8310 3.7551 19 1 7.2795 -4.6389 3.5507 20 6 2.1955 -1.2000 -0.0057 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5138 24 1 1.6521 2.1334 -0.0004 25 1 4.1113 2.1450 -0.0010 26 1 2.6254 -3.6781 -0.0568 27 1 3.2765 -3.3675 -1.5553 28 1 6.2004 -5.6656 0.8460 29 1 1.6518 -2.1331 -0.0097 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238542774.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:52 Heat of formation + Delta-G solvation = 27.699809 kcal Electronic energy + Delta-G solvation = -13750.639857 eV Core-core repulsion = 11444.547858 eV Total energy + Delta-G solvation = -2306.091998 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.67794 -37.42532 -36.56864 -33.88521 -33.48376 -30.82757 -28.52770 -27.93983 -24.87894 -23.19214 -21.59495 -19.55326 -18.58568 -16.82295 -16.68075 -16.04911 -15.80643 -15.27297 -15.00815 -14.53029 -14.33623 -14.20325 -13.91243 -13.78391 -13.38658 -12.97597 -12.86238 -12.75219 -12.45784 -12.35765 -11.95935 -11.61310 -11.32545 -10.61875 -9.68535 -9.42188 -8.94907 -8.04102 -6.25640 -0.04559 0.56038 1.36227 1.38788 1.48611 1.78918 2.06392 2.41234 3.01998 3.14665 3.20262 4.01741 4.06018 4.07181 4.34126 4.56958 4.60769 4.85558 4.88575 4.97725 5.10704 5.26986 5.32955 5.43854 5.63836 5.68865 5.74770 6.05199 6.12681 6.58364 6.63734 7.07325 7.24260 7.47108 8.99360 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.027822 B = 0.010191 C = 0.008805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.161165 B = 2746.911886 C = 3179.308543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.047 4.047 3 C -0.134 4.134 4 C -0.059 4.059 5 C -0.072 4.072 6 C 0.282 3.718 7 N -0.480 5.480 8 C -0.046 4.046 9 C 0.256 3.744 10 H 0.002 0.998 11 N -0.819 5.819 12 C -0.539 4.539 13 H 0.047 0.953 14 C 0.035 3.965 15 N -0.879 5.879 16 Si 0.942 3.058 17 H -0.268 1.268 18 H -0.273 1.273 19 H -0.288 1.288 20 C -0.141 4.141 21 H 0.088 0.912 22 H 0.069 0.931 23 H 0.089 0.911 24 H 0.168 0.832 25 H 0.151 0.849 26 H 0.330 0.670 27 H 0.315 0.685 28 H 0.255 0.745 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.427 11.216 -1.560 17.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.048 4.048 3 C -0.152 4.152 4 C -0.080 4.080 5 C -0.076 4.076 6 C -0.031 4.031 7 N -0.157 5.157 8 C -0.051 4.051 9 C 0.146 3.854 10 H 0.019 0.981 11 N -0.348 5.348 12 C -0.577 4.577 13 H 0.065 0.935 14 C -0.168 4.168 15 N -0.514 5.514 16 Si 0.768 3.232 17 H -0.192 1.192 18 H -0.198 1.198 19 H -0.215 1.215 20 C -0.159 4.159 21 H 0.107 0.893 22 H 0.088 0.912 23 H 0.108 0.892 24 H 0.186 0.814 25 H 0.168 0.832 26 H 0.144 0.856 27 H 0.127 0.873 28 H 0.064 0.936 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.969 10.521 -1.460 15.269 hybrid contribution -0.096 -0.080 0.701 0.712 sum -11.065 10.441 -0.759 15.232 Atomic orbital electron populations 1.20923 0.88280 1.04130 1.03715 1.20516 0.98029 0.92208 0.94048 1.21249 0.92633 0.98991 1.02304 1.21379 0.95217 0.95590 0.95772 1.16174 0.83373 0.95777 1.12251 1.26114 0.93369 0.91603 0.92063 1.81070 1.13637 1.09653 1.11334 1.21524 0.95526 0.95874 0.92201 1.17838 0.90228 0.82960 0.94382 0.98058 1.58854 1.21732 1.50126 1.04090 1.21064 1.38016 1.06853 0.91801 0.93497 1.25659 0.94937 0.96392 0.99860 1.70230 1.37256 1.12048 1.31911 0.85769 0.77515 0.78498 0.81401 1.19237 1.19841 1.21462 1.20911 0.92008 0.99320 1.03685 0.89346 0.91176 0.89234 0.81428 0.83151 0.85599 0.87307 0.93583 0.85209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 10.00 71.24 0.71 -0.98 15 2 C -0.05 -1.09 5.89 -19.80 -0.12 -1.21 15 3 C -0.13 -2.80 9.68 22.23 0.22 -2.59 15 4 C -0.06 -1.56 9.76 22.54 0.22 -1.34 15 5 C -0.07 -2.65 5.73 -21.36 -0.12 -2.77 15 6 C 0.28 12.26 13.89 88.33 1.23 13.49 15 7 N -0.48 -22.86 18.54 19.00 0.35 -22.51 15 8 C -0.05 -1.83 5.02 -19.60 -0.10 -1.93 15 9 C 0.26 12.77 2.37 43.42 0.10 12.87 15 10 H 0.00 0.10 7.28 -2.38 -0.02 0.08 15 11 N -0.82 -37.40 8.12 -174.95 -1.42 -38.82 15 12 C -0.54 -30.05 8.71 25.60 0.22 -29.82 15 13 H 0.05 2.63 7.74 -2.91 -0.02 2.60 15 14 C 0.04 2.02 5.39 84.66 0.46 2.48 15 15 N -0.88 -53.00 12.76 21.45 0.27 -52.73 15 16 Si 0.94 45.25 29.54 68.60 2.03 47.28 15 17 H -0.27 -12.50 7.11 99.48 0.71 -11.79 15 18 H -0.27 -12.59 7.11 99.48 0.71 -11.88 15 19 H -0.29 -13.94 7.11 99.48 0.71 -13.23 15 20 C -0.14 -4.40 8.91 22.23 0.20 -4.20 15 21 H 0.09 1.08 8.14 -2.39 -0.02 1.06 15 22 H 0.07 1.06 8.08 -2.38 -0.02 1.04 15 23 H 0.09 0.96 8.08 -2.38 -0.02 0.94 15 24 H 0.17 2.08 8.06 -2.91 -0.02 2.06 15 25 H 0.15 3.10 8.06 -2.91 -0.02 3.08 15 26 H 0.33 13.73 7.21 -89.69 -0.65 13.08 15 27 H 0.32 12.67 9.06 -89.69 -0.81 11.85 15 28 H 0.26 14.71 8.31 -92.70 -0.77 13.94 15 29 H 0.13 3.86 6.28 -2.91 -0.02 3.84 15 Total: -1.00 -70.08 261.93 3.98 -66.11 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -0.27 Total: 16.67 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 3.02 Total: -15.99 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -0.79 Total: -114.06 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -70.08 3.98 -66.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238542774.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.806 kcal (2) G-P(sol) polarization free energy of solvation -70.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds