Wall clock time and date at job start Mon Mar 30 2020 20:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34664 * 119.72119 * 2 1 4 4 C 1.40814 * 120.61890 * 179.73292 * 3 2 1 5 5 C 1.35882 * 119.76946 * 0.53849 * 4 3 2 6 6 C 1.40965 * 119.17551 * 359.73654 * 5 4 3 7 7 C 1.37998 * 133.70983 * 179.97438 * 6 5 4 8 8 C 1.50698 * 126.26960 * 0.02562 * 7 6 5 9 9 C 1.50704 * 109.47189 * 89.99631 * 8 7 6 10 10 H 1.07990 * 120.00038 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99676 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00376 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99666 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47262 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47177 * 119.99890 * 13 11 9 16 16 H 1.48499 * 109.47437 * 240.00263 * 13 11 9 17 17 N 1.33402 * 107.46125 * 179.97438 * 7 6 5 18 18 C 1.30902 * 109.86798 * 0.02562 * 17 7 6 19 19 N 1.35028 * 109.37664 * 359.97438 * 18 17 7 20 20 H 1.09002 * 109.47152 * 269.72799 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.72900 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.72881 * 1 2 3 23 23 H 1.07998 * 119.69047 * 359.97438 * 3 2 1 24 24 H 1.07996 * 120.11803 * 180.27192 * 4 3 2 25 25 H 1.08003 * 120.41179 * 179.76282 * 5 4 3 26 26 H 1.09001 * 109.47242 * 209.99509 * 8 7 6 27 27 H 1.09003 * 109.47388 * 329.99804 * 8 7 6 28 28 H 0.96997 * 120.00179 * 179.97438 * 12 11 9 29 29 H 1.08002 * 125.31286 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1747 1.1695 0.0000 4 6 3.5826 1.1916 0.0056 5 6 4.2757 0.0228 0.0001 6 6 3.5676 -1.1961 -0.0057 7 6 3.9511 -2.5217 -0.0124 8 6 5.3659 -3.0404 -0.0151 9 6 5.8377 -3.2205 1.4049 10 1 5.1790 -2.9827 2.2269 11 6 7.1106 -3.6879 1.6543 12 7 7.9133 -3.9761 0.6532 13 14 7.6955 -3.9104 3.4144 14 1 6.6109 -3.5182 4.3498 15 1 8.0532 -5.3338 3.6409 16 1 8.8872 -3.0567 3.6517 17 7 2.8399 -3.2598 -0.0150 18 6 1.7881 -2.4805 -0.0109 19 7 2.1865 -1.1904 -0.0048 20 1 -0.3633 -0.0049 1.0277 21 1 -0.3633 -0.8876 -0.5180 22 1 -0.3633 0.8924 -0.5096 23 1 1.6251 2.0992 -0.0004 24 1 4.1098 2.1341 0.0100 25 1 5.3557 0.0276 0.0005 26 1 5.4007 -3.9985 -0.5337 27 1 6.0135 -2.3273 -0.5253 28 1 8.8089 -4.3046 0.8288 29 1 0.7618 -2.8170 -0.0114 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261157737.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:45 Heat of formation + Delta-G solvation = 74.189178 kcal Electronic energy + Delta-G solvation = -13743.253331 eV Core-core repulsion = 11439.177263 eV Total energy + Delta-G solvation = -2304.076068 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.18107 -37.20826 -33.96484 -32.83531 -31.15275 -29.75008 -27.37654 -26.21187 -23.19520 -22.68166 -21.63062 -19.16863 -17.23753 -16.29285 -15.93632 -15.35191 -15.27088 -14.49334 -13.91646 -13.61550 -13.31811 -12.78785 -12.34979 -12.10350 -11.77277 -11.23443 -11.22383 -11.15005 -10.69745 -10.61947 -10.09410 -9.80631 -9.32355 -9.15726 -8.70031 -8.34683 -6.72494 -5.94888 -3.98494 1.23922 1.78521 3.10742 3.34799 3.41882 3.47521 3.69010 4.02235 4.52876 4.55371 4.97423 5.04431 5.21534 5.30334 5.35492 5.39737 5.49881 5.59939 5.74081 6.08165 6.27189 6.29232 6.52151 6.71020 7.09278 7.37544 7.55517 7.70160 7.83589 7.99980 8.41101 8.71320 9.04699 9.63937 11.13678 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.041699 B = 0.007867 C = 0.007412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.313914 B = 3558.108174 C = 3776.654420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.060 3.940 3 C -0.133 4.133 4 C -0.166 4.166 5 C -0.034 4.034 6 C -0.029 4.029 7 C 0.082 3.918 8 C 0.093 3.907 9 C -0.503 4.503 10 H 0.054 0.946 11 C 0.058 3.942 12 N -0.895 5.895 13 Si 0.895 3.105 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.284 1.284 17 N -0.458 5.458 18 C 0.125 3.875 19 N -0.371 5.371 20 H 0.077 0.923 21 H 0.070 0.930 22 H 0.082 0.918 23 H 0.136 0.864 24 H 0.128 0.872 25 H 0.146 0.854 26 H 0.037 0.963 27 H 0.034 0.966 28 H 0.261 0.739 29 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.363 10.522 -1.827 16.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.041 4.041 3 C -0.155 4.155 4 C -0.186 4.186 5 C -0.054 4.054 6 C -0.134 4.134 7 C -0.055 4.055 8 C 0.055 3.945 9 C -0.541 4.541 10 H 0.073 0.927 11 C -0.143 4.143 12 N -0.535 5.535 13 Si 0.723 3.277 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.210 1.210 17 N -0.173 5.173 18 C -0.149 4.149 19 N -0.044 5.044 20 H 0.096 0.904 21 H 0.089 0.911 22 H 0.101 0.899 23 H 0.154 0.846 24 H 0.146 0.854 25 H 0.163 0.837 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -12.388 9.550 -1.872 15.754 hybrid contribution 0.263 0.730 1.035 1.294 sum -12.125 10.281 -0.837 15.919 Atomic orbital electron populations 1.20788 0.88738 1.03788 1.03221 1.20063 0.94357 0.84365 1.05337 1.20446 0.94865 0.95978 1.04189 1.20811 0.93433 0.98183 1.06159 1.20632 1.00639 0.89160 0.94966 1.19497 0.81773 0.97019 1.15126 1.22177 0.96670 0.86492 1.00121 1.17717 0.82089 0.96846 0.97883 1.21050 0.98172 1.43444 0.91481 0.92733 1.24965 0.96661 0.95508 0.97150 1.69961 1.07822 1.45258 1.30451 0.86486 0.78547 0.77782 0.84926 1.19833 1.20941 1.20999 1.70033 0.97609 1.33009 1.16625 1.24708 1.00288 0.77214 1.12647 1.42760 1.07707 1.06136 1.47839 0.90429 0.91101 0.89889 0.84650 0.85426 0.83655 0.94432 0.94802 0.92949 0.78391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.86 36.01 0.36 -0.66 15 2 C 0.06 0.85 6.79 -81.52 -0.55 0.30 15 3 C -0.13 -1.75 9.57 -39.87 -0.38 -2.13 15 4 C -0.17 -2.43 10.07 -39.45 -0.40 -2.83 15 5 C -0.03 -0.62 10.10 -39.39 -0.40 -1.02 15 6 C -0.03 -0.62 6.74 -84.09 -0.57 -1.18 15 7 C 0.08 2.01 6.40 -82.00 -0.52 1.48 15 8 C 0.09 2.54 5.53 -29.03 -0.16 2.38 15 9 C -0.50 -14.71 9.09 -34.44 -0.31 -15.03 15 10 H 0.05 1.62 7.74 -52.49 -0.41 1.22 15 11 C 0.06 1.68 5.46 -17.82 -0.10 1.59 15 12 N -0.90 -26.88 13.29 55.43 0.74 -26.14 15 13 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 15 14 H -0.27 -6.73 7.11 56.52 0.40 -6.33 15 15 H -0.28 -6.94 7.11 56.52 0.40 -6.54 15 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 17 N -0.46 -10.63 11.19 -10.19 -0.11 -10.74 15 18 C 0.13 2.32 12.12 -90.05 -1.09 1.23 15 19 N -0.37 -6.76 2.94 -58.24 -0.17 -6.93 15 20 H 0.08 0.66 8.14 -51.93 -0.42 0.23 15 21 H 0.07 0.63 7.51 -51.93 -0.39 0.24 15 22 H 0.08 0.59 8.07 -51.93 -0.42 0.17 15 23 H 0.14 1.27 8.06 -52.49 -0.42 0.85 15 24 H 0.13 1.49 8.06 -52.49 -0.42 1.06 15 25 H 0.15 2.60 8.06 -52.48 -0.42 2.17 15 26 H 0.04 1.10 8.14 -51.93 -0.42 0.68 15 27 H 0.03 0.93 8.14 -51.93 -0.42 0.51 15 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 29 H 0.20 2.69 7.77 -52.49 -0.41 2.29 15 LS Contribution 258.01 15.07 3.89 3.89 Total: -1.00 -33.48 258.01 -8.11 -41.58 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: -3.29 Total: -2.89 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -4.13 Total: -15.87 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.45 Total: -43.82 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.48 -8.11 -41.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157737.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.771 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds