Wall clock time and date at job start Mon Mar 30 2020 20:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38131 * 126.08390 * 2 1 4 4 C 1.47241 * 106.50711 * 180.10444 * 3 2 1 5 5 C 1.40914 * 118.56117 * 179.77041 * 4 3 2 6 6 C 1.35821 * 119.63023 * 359.71357 * 5 4 3 7 7 C 1.39624 * 121.82349 * 359.97438 * 6 5 4 8 8 C 1.35727 * 121.70164 * 0.04279 * 7 6 5 9 9 C 1.50698 * 120.24519 * 179.97438 * 8 7 6 10 10 N 1.32339 * 106.88571 * 359.57691 * 4 3 2 11 11 N 1.35050 * 126.08020 * 179.62670 * 2 1 3 12 12 C 1.37080 * 125.10190 * 0.03888 * 11 2 1 13 13 H 1.08007 * 120.00454 * 353.82441 * 12 11 2 14 14 C 1.39147 * 120.00142 * 173.82209 * 12 11 2 15 15 N 1.31161 * 119.99691 * 5.88504 * 14 12 11 16 16 Si 1.86808 * 120.00073 * 185.88279 * 14 12 11 17 17 H 1.48498 * 109.46888 * 94.98751 * 16 14 12 18 18 H 1.48502 * 109.46977 * 214.98392 * 16 14 12 19 19 H 1.48500 * 109.47088 * 334.98491 * 16 14 12 20 20 H 1.09004 * 109.47866 * 270.34705 * 1 2 3 21 21 H 1.09007 * 109.47255 * 30.34787 * 1 2 3 22 22 H 1.09007 * 109.47448 * 150.34333 * 1 2 3 23 23 H 1.08001 * 120.18264 * 179.70134 * 5 4 3 24 24 H 1.07994 * 119.08792 * 180.02562 * 6 5 4 25 25 H 1.08000 * 119.15357 * 180.02562 * 7 6 5 26 26 H 1.09001 * 109.47367 * 89.99646 * 9 8 7 27 27 H 1.08998 * 109.47178 * 329.99867 * 9 8 7 28 28 H 1.09000 * 109.47299 * 209.99570 * 9 8 7 29 29 H 0.97005 * 119.99566 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3205 1.1163 0.0000 4 6 3.7078 0.6230 -0.0026 5 6 4.7573 1.5633 -0.0081 6 6 4.4695 2.8907 -0.0167 7 6 3.1541 3.3588 -0.0210 8 6 2.0949 2.5101 -0.0157 9 6 0.6885 3.0513 -0.0200 10 7 3.6457 -0.6990 0.0054 11 7 2.3023 -1.0914 0.0071 12 6 1.8601 -2.3889 0.0148 13 1 0.8057 -2.5996 0.1161 14 6 2.7698 -3.4347 -0.1080 15 7 4.0576 -3.1862 -0.1149 16 14 2.1568 -5.1926 -0.2629 17 1 2.0759 -5.5639 -1.6984 18 1 3.0968 -6.1077 0.4329 19 1 0.8104 -5.3034 0.3537 20 1 -0.3635 0.0062 1.0276 21 1 -0.3634 0.8869 -0.5193 22 1 -0.3634 -0.8931 -0.5085 23 1 5.7847 1.2304 -0.0052 24 1 5.2805 3.6037 -0.0213 25 1 2.9746 4.4238 -0.0283 26 1 0.3498 3.1750 -1.0486 27 1 0.6688 4.0158 0.4874 28 1 0.0295 2.3546 0.4982 29 1 4.6918 -3.9153 -0.2001 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261175290.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:58 Heat of formation + Delta-G solvation = 77.606953 kcal Electronic energy + Delta-G solvation = -14026.966878 eV Core-core repulsion = 11723.039016 eV Total energy + Delta-G solvation = -2303.927862 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.82352 -36.44986 -33.52721 -32.72529 -30.34663 -29.52740 -26.58433 -25.85898 -24.77303 -21.73039 -20.34780 -18.42762 -17.38016 -15.97994 -15.25508 -14.56770 -14.25011 -14.06456 -13.37180 -12.70730 -12.56449 -12.40048 -12.12147 -12.01477 -11.63873 -11.46726 -11.27276 -10.94490 -10.75489 -10.61393 -10.42781 -10.01079 -9.38835 -8.59552 -8.54504 -7.70521 -6.91936 -6.15874 -4.59198 2.00257 2.86085 2.88241 2.94817 3.03210 3.59127 3.76647 4.47711 4.74842 5.09194 5.61046 5.84077 5.87562 5.98039 6.08889 6.15600 6.17907 6.31192 6.38058 6.50622 6.61939 6.75796 6.78096 6.88383 6.98905 7.37195 7.61159 7.72257 7.79266 7.93454 8.08126 8.48184 9.07177 9.48869 9.99513 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.042779 B = 0.009660 C = 0.007932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.373121 B = 2897.873649 C = 3529.046707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.077 4.077 3 C -0.181 4.181 4 C 0.045 3.955 5 C -0.114 4.114 6 C -0.119 4.119 7 C -0.195 4.195 8 C -0.033 4.033 9 C -0.110 4.110 10 N -0.299 5.299 11 N -0.080 5.080 12 C -0.300 4.300 13 H 0.127 0.873 14 C 0.045 3.955 15 N -0.732 5.732 16 Si 0.942 3.058 17 H -0.266 1.266 18 H -0.271 1.271 19 H -0.258 1.258 20 H 0.053 0.947 21 H 0.067 0.933 22 H 0.057 0.943 23 H 0.104 0.896 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.008 2.763 -0.179 5.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.211 4.211 3 C -0.191 4.191 4 C -0.098 4.098 5 C -0.137 4.137 6 C -0.141 4.141 7 C -0.215 4.215 8 C -0.036 4.036 9 C -0.167 4.167 10 N -0.134 5.134 11 N 0.162 4.838 12 C -0.436 4.436 13 H 0.145 0.855 14 C -0.177 4.177 15 N -0.356 5.356 16 Si 0.764 3.236 17 H -0.191 1.191 18 H -0.196 1.196 19 H -0.182 1.182 20 H 0.072 0.928 21 H 0.086 0.914 22 H 0.076 0.924 23 H 0.122 0.878 24 H 0.119 0.881 25 H 0.115 0.885 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.060 1.547 -0.177 4.348 hybrid contribution -0.478 -0.064 -0.069 0.488 sum -4.538 1.483 -0.246 4.781 Atomic orbital electron populations 1.20079 0.89195 1.01742 1.00828 1.20400 0.93081 0.86655 1.20993 1.18840 0.92725 0.92168 1.15351 1.21169 0.93500 0.92610 1.02484 1.19496 0.95875 0.91256 1.07037 1.20115 0.95734 0.94445 1.03757 1.19845 0.92342 0.97393 1.11960 1.18748 0.94240 0.90958 0.99608 1.20807 0.94734 1.00071 1.01047 1.78833 0.91883 1.08233 1.34424 1.44818 1.04184 1.04726 1.30069 1.20358 0.95446 0.78596 1.49234 0.85523 1.25909 0.94815 1.02003 0.95010 1.70207 1.01456 1.34333 1.29592 0.85684 0.79624 0.78853 0.79456 1.19090 1.19595 1.18193 0.92824 0.91447 0.92410 0.87777 0.88135 0.88521 0.92346 0.92800 0.91700 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.14 8.79 36.00 0.32 -0.82 15 2 C -0.08 -1.90 6.96 -81.22 -0.57 -2.47 15 3 C -0.18 -4.54 6.12 -105.16 -0.64 -5.18 15 4 C 0.05 1.23 7.49 -82.98 -0.62 0.61 15 5 C -0.11 -2.71 10.08 -39.44 -0.40 -3.10 15 6 C -0.12 -2.48 9.90 -39.93 -0.40 -2.87 15 7 C -0.19 -3.96 9.54 -39.96 -0.38 -4.35 15 8 C -0.03 -0.70 5.90 -104.40 -0.62 -1.32 15 9 C -0.11 -1.84 9.04 36.00 0.33 -1.52 15 10 N -0.30 -8.78 10.32 33.28 0.34 -8.44 15 11 N -0.08 -2.18 3.66 -7.48 -0.03 -2.21 15 12 C -0.30 -7.60 9.84 -14.87 -0.15 -7.74 15 13 H 0.13 2.83 7.00 -52.48 -0.37 2.46 15 14 C 0.04 1.09 5.50 -17.50 -0.10 1.00 15 15 N -0.73 -19.41 11.75 55.50 0.65 -18.76 15 16 Si 0.94 17.54 29.56 -169.99 -5.02 12.52 15 17 H -0.27 -4.90 7.11 56.52 0.40 -4.50 15 18 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 19 H -0.26 -4.56 7.11 56.52 0.40 -4.16 15 20 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 21 H 0.07 1.13 6.06 -51.93 -0.31 0.81 15 22 H 0.06 1.03 7.32 -51.93 -0.38 0.65 15 23 H 0.10 2.31 8.06 -52.49 -0.42 1.89 15 24 H 0.10 1.75 8.06 -52.49 -0.42 1.32 15 25 H 0.10 1.67 8.06 -52.49 -0.42 1.25 15 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 27 H 0.05 0.78 8.08 -51.93 -0.42 0.36 15 28 H 0.06 1.05 5.77 -51.93 -0.30 0.75 15 29 H 0.28 6.73 8.30 -40.82 -0.34 6.39 15 LS Contribution 248.76 15.07 3.75 3.75 Total: -1.00 -30.74 248.76 -6.56 -37.29 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -3.03 Total: 3.62 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: -3.22 Total: -27.77 kcal Atomic # 7 Polarization: -30.38 SS G_CDS: 0.97 Total: -29.41 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.02 Total: 12.52 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.74 -6.56 -37.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261175290.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.900 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds