Wall clock time and date at job start Mon Mar 30 2020 20:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38131 * 126.08390 * 2 1 4 4 C 1.47241 * 106.50711 * 180.10444 * 3 2 1 5 5 C 1.40914 * 118.56117 * 179.77041 * 4 3 2 6 6 C 1.35821 * 119.63023 * 359.71357 * 5 4 3 7 7 C 1.39624 * 121.82349 * 359.97438 * 6 5 4 8 8 C 1.35727 * 121.70164 * 0.04279 * 7 6 5 9 9 C 1.50698 * 120.24519 * 179.97438 * 8 7 6 10 10 N 1.32339 * 106.88571 * 359.57691 * 4 3 2 11 11 N 1.35050 * 126.08020 * 179.62670 * 2 1 3 12 12 C 1.37080 * 125.10190 * 0.03888 * 11 2 1 13 13 H 1.08007 * 120.00454 * 353.82441 * 12 11 2 14 14 C 1.39147 * 120.00142 * 173.82209 * 12 11 2 15 15 N 1.31161 * 119.99691 * 5.88504 * 14 12 11 16 16 Si 1.86808 * 120.00073 * 185.88279 * 14 12 11 17 17 H 1.48498 * 109.46888 * 94.98751 * 16 14 12 18 18 H 1.48502 * 109.46977 * 214.98392 * 16 14 12 19 19 H 1.48500 * 109.47088 * 334.98491 * 16 14 12 20 20 H 1.09004 * 109.47866 * 270.34705 * 1 2 3 21 21 H 1.09007 * 109.47255 * 30.34787 * 1 2 3 22 22 H 1.09007 * 109.47448 * 150.34333 * 1 2 3 23 23 H 1.08001 * 120.18264 * 179.70134 * 5 4 3 24 24 H 1.07994 * 119.08792 * 180.02562 * 6 5 4 25 25 H 1.08000 * 119.15357 * 180.02562 * 7 6 5 26 26 H 1.09001 * 109.47367 * 89.99646 * 9 8 7 27 27 H 1.08998 * 109.47178 * 329.99867 * 9 8 7 28 28 H 1.09000 * 109.47299 * 209.99570 * 9 8 7 29 29 H 0.97005 * 119.99566 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3205 1.1163 0.0000 4 6 3.7078 0.6230 -0.0026 5 6 4.7573 1.5633 -0.0081 6 6 4.4695 2.8907 -0.0167 7 6 3.1541 3.3588 -0.0210 8 6 2.0949 2.5101 -0.0157 9 6 0.6885 3.0513 -0.0200 10 7 3.6457 -0.6990 0.0054 11 7 2.3023 -1.0914 0.0071 12 6 1.8601 -2.3889 0.0148 13 1 0.8057 -2.5996 0.1161 14 6 2.7698 -3.4347 -0.1080 15 7 4.0576 -3.1862 -0.1149 16 14 2.1568 -5.1926 -0.2629 17 1 2.0759 -5.5639 -1.6984 18 1 3.0968 -6.1077 0.4329 19 1 0.8104 -5.3034 0.3537 20 1 -0.3635 0.0062 1.0276 21 1 -0.3634 0.8869 -0.5193 22 1 -0.3634 -0.8931 -0.5085 23 1 5.7847 1.2304 -0.0052 24 1 5.2805 3.6037 -0.0213 25 1 2.9746 4.4238 -0.0283 26 1 0.3498 3.1750 -1.0486 27 1 0.6688 4.0158 0.4874 28 1 0.0295 2.3546 0.4982 29 1 4.6918 -3.9153 -0.2001 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261175290.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:57 Heat of formation + Delta-G solvation = 59.149190 kcal Electronic energy + Delta-G solvation = -14027.767266 eV Core-core repulsion = 11723.039016 eV Total energy + Delta-G solvation = -2304.728251 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.65694 -38.17647 -35.32646 -34.40175 -32.13311 -31.21740 -28.17946 -27.63992 -26.48143 -23.48572 -22.11390 -20.20350 -19.20838 -17.71590 -17.08305 -16.16576 -15.89601 -15.87795 -14.98836 -14.24000 -14.09912 -13.92088 -13.75610 -13.56718 -13.31060 -13.03403 -12.84406 -12.56070 -12.25251 -12.18558 -12.01264 -11.64389 -11.13440 -10.41810 -10.39623 -9.53267 -8.70411 -7.98508 -6.50243 0.25929 1.25298 1.34035 1.41334 1.54792 1.97532 2.02916 2.68573 2.93409 3.30022 3.90366 4.21530 4.36432 4.46985 4.51115 4.66799 4.80513 4.85955 4.89464 4.98187 5.06372 5.10239 5.14262 5.28959 5.34017 5.60936 5.88255 5.98050 6.04695 6.14644 6.37605 6.69163 7.25426 7.58260 8.25534 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.042779 B = 0.009660 C = 0.007932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.373121 B = 2897.873649 C = 3529.046707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.079 4.079 3 C -0.213 4.213 4 C 0.005 3.995 5 C -0.152 4.152 6 C -0.100 4.100 7 C -0.199 4.199 8 C -0.035 4.035 9 C -0.107 4.107 10 N -0.357 5.357 11 N -0.108 5.108 12 C -0.337 4.337 13 H 0.151 0.849 14 C -0.003 4.003 15 N -0.792 5.792 16 Si 1.026 2.974 17 H -0.262 1.262 18 H -0.270 1.270 19 H -0.237 1.237 20 H 0.071 0.929 21 H 0.093 0.907 22 H 0.066 0.934 23 H 0.102 0.898 24 H 0.140 0.860 25 H 0.140 0.860 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.309 4.310 -0.236 8.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.214 4.214 3 C -0.223 4.223 4 C -0.137 4.137 5 C -0.175 4.175 6 C -0.121 4.121 7 C -0.219 4.219 8 C -0.037 4.037 9 C -0.164 4.164 10 N -0.192 5.192 11 N 0.133 4.867 12 C -0.471 4.471 13 H 0.168 0.832 14 C -0.219 4.219 15 N -0.416 5.416 16 Si 0.842 3.158 17 H -0.186 1.186 18 H -0.195 1.195 19 H -0.159 1.159 20 H 0.090 0.910 21 H 0.111 0.889 22 H 0.085 0.915 23 H 0.120 0.880 24 H 0.158 0.842 25 H 0.158 0.842 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.088 0.912 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.371 3.109 -0.228 7.093 hybrid contribution 0.244 -0.262 -0.044 0.361 sum -6.127 2.848 -0.273 6.762 Atomic orbital electron populations 1.20243 0.85312 1.03453 1.02457 1.21426 0.95552 0.86017 1.18425 1.19386 0.91789 0.94244 1.16883 1.21785 0.95873 0.92726 1.03353 1.19764 0.95418 0.92429 1.09861 1.20625 0.97664 0.93679 1.00120 1.20404 0.91644 0.99512 1.10325 1.19371 0.97377 0.89493 0.97485 1.20877 0.91486 1.01351 1.02661 1.78659 0.94053 1.09843 1.36651 1.45109 1.03943 1.05967 1.31633 1.21080 0.96879 0.78648 1.50538 0.83221 1.27199 0.94536 1.06812 0.93369 1.70374 1.03307 1.35962 1.31998 0.84494 0.79744 0.72018 0.79512 1.18632 1.19512 1.15925 0.91021 0.88881 0.91502 0.87979 0.84207 0.84247 0.90553 0.89864 0.91226 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.02 8.79 71.23 0.63 -1.40 15 2 C -0.08 -3.90 6.96 42.04 0.29 -3.61 15 3 C -0.21 -10.70 6.12 -20.21 -0.12 -10.82 15 4 C 0.01 0.30 7.49 42.09 0.32 0.61 15 5 C -0.15 -7.42 10.08 22.36 0.23 -7.19 15 6 C -0.10 -3.95 9.90 22.04 0.22 -3.73 15 7 C -0.20 -7.39 9.54 22.02 0.21 -7.18 15 8 C -0.03 -1.40 5.90 -19.72 -0.12 -1.51 15 9 C -0.11 -3.12 9.04 71.24 0.64 -2.47 15 10 N -0.36 -22.22 10.32 -48.64 -0.50 -22.72 15 11 N -0.11 -6.13 3.66 -177.57 -0.65 -6.78 15 12 C -0.34 -17.56 9.84 84.09 0.83 -16.73 15 13 H 0.15 6.68 7.00 -2.91 -0.02 6.66 15 14 C 0.00 -0.15 5.50 85.01 0.47 0.32 15 15 N -0.79 -44.49 11.75 21.68 0.25 -44.24 15 16 Si 1.03 36.34 29.56 68.60 2.03 38.37 15 17 H -0.26 -8.99 7.11 99.48 0.71 -8.28 15 18 H -0.27 -9.40 7.11 99.48 0.71 -8.69 15 19 H -0.24 -7.46 7.11 99.48 0.71 -6.75 15 20 H 0.07 2.31 8.14 -2.39 -0.02 2.29 15 21 H 0.09 2.80 6.06 -2.38 -0.01 2.79 15 22 H 0.07 2.25 7.32 -2.38 -0.02 2.23 15 23 H 0.10 4.79 8.06 -2.91 -0.02 4.76 15 24 H 0.14 4.36 8.06 -2.91 -0.02 4.33 15 25 H 0.14 4.01 8.06 -2.91 -0.02 3.98 15 26 H 0.08 1.99 8.14 -2.39 -0.02 1.97 15 27 H 0.08 1.95 8.08 -2.39 -0.02 1.93 15 28 H 0.07 1.96 5.77 -2.39 -0.01 1.95 15 29 H 0.29 14.49 8.30 -92.70 -0.77 13.72 15 Total: -1.00 -72.08 248.76 5.87 -66.21 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 1.16 Total: 22.88 kcal Atomic # 6 Polarization: -57.31 SS G_CDS: 3.59 Total: -53.72 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -0.90 Total: -73.74 kcal Atomic # 14 Polarization: 36.34 SS G_CDS: 2.03 Total: 38.37 kcal Total: -72.08 5.87 -66.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261175290.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.358 kcal (2) G-P(sol) polarization free energy of solvation -72.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds