Wall clock time and date at job start Mon Mar 30 2020 20:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38245 * 126.05234 * 2 1 4 4 C 1.41126 * 134.81254 * 359.71385 * 3 2 1 5 5 C 1.35657 * 119.53459 * 179.97438 * 4 3 2 6 6 C 1.39675 * 121.72363 * 0.04200 * 5 4 3 7 7 C 1.35638 * 121.82193 * 359.97438 * 6 5 4 8 8 C 1.41157 * 119.59159 * 0.02562 * 7 6 5 9 9 N 1.32058 * 134.67834 * 180.02562 * 8 7 6 10 10 N 1.33987 * 126.04166 * 179.68981 * 2 1 3 11 11 C 1.46506 * 125.02255 * 0.24363 * 10 2 1 12 12 C 1.50698 * 109.47200 * 90.00026 * 11 10 2 13 13 H 1.07997 * 120.00042 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00160 * 179.97438 * 12 11 10 15 15 N 1.31519 * 120.00082 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00290 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47043 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47188 * 120.00192 * 16 14 12 19 19 H 1.48510 * 109.46981 * 240.00207 * 16 14 12 20 20 H 1.08997 * 109.47316 * 89.99735 * 1 2 3 21 21 H 1.09000 * 109.47512 * 210.00069 * 1 2 3 22 22 H 1.09004 * 109.46725 * 330.00350 * 1 2 3 23 23 H 1.08003 * 120.23450 * 0.02562 * 4 3 2 24 24 H 1.08005 * 119.13551 * 180.02562 * 5 4 3 25 25 H 1.08003 * 119.08934 * 180.02562 * 6 5 4 26 26 H 1.08001 * 120.20557 * 180.02562 * 7 6 5 27 27 H 1.09002 * 109.46905 * 209.99774 * 11 10 2 28 28 H 1.08994 * 109.47007 * 329.99813 * 11 10 2 29 29 H 0.96993 * 120.00204 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3206 1.1177 0.0000 4 6 2.0965 2.5110 -0.0050 5 6 3.1557 3.3587 -0.0027 6 6 4.4714 2.8900 0.0037 7 6 4.7584 1.5643 0.0084 8 6 3.7062 0.6233 0.0063 9 7 3.6401 -0.6956 0.0099 10 7 2.2953 -1.0834 0.0059 11 6 1.8199 -2.4692 0.0083 12 6 1.6618 -2.9485 -1.4117 13 1 1.8927 -2.2872 -2.2337 14 6 1.2233 -4.2315 -1.6614 15 7 0.9425 -5.0370 -0.6604 16 14 1.0280 -4.8259 -3.4215 17 1 1.4053 -3.7360 -4.3568 18 1 1.9083 -6.0001 -3.6480 19 1 -0.3857 -5.2140 -3.6589 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3633 0.8901 0.5138 23 1 1.0889 2.8998 -0.0098 24 1 2.9768 4.4238 -0.0061 25 1 5.2828 3.6029 0.0057 26 1 5.7856 1.2307 0.0137 27 1 2.5421 -3.1001 0.5264 28 1 0.8585 -2.5225 0.5190 29 1 0.6337 -5.9396 -0.8361 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261180299.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:04 Heat of formation + Delta-G solvation = 60.881433 kcal Electronic energy + Delta-G solvation = -13693.691652 eV Core-core repulsion = 11389.038517 eV Total energy + Delta-G solvation = -2304.653135 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.13987 -38.18727 -35.50710 -33.96335 -32.70431 -30.94056 -29.10755 -27.62008 -25.81442 -23.10718 -22.62147 -20.38711 -18.91253 -18.03188 -17.42640 -16.52272 -16.31809 -16.01707 -14.90507 -14.82259 -14.45039 -13.95955 -13.93076 -13.71981 -13.27672 -13.06413 -12.74923 -12.56708 -12.46533 -12.28884 -12.25348 -11.65749 -11.03252 -10.90860 -10.79820 -9.45795 -8.44504 -8.37547 -6.59426 -0.10495 1.01641 1.33858 1.35456 1.47081 1.61093 1.73995 2.29951 2.89628 3.05311 3.42464 3.75647 4.14237 4.23057 4.34581 4.57128 4.59990 4.70607 4.74390 4.80895 4.87498 5.04924 5.11022 5.37841 5.47649 5.68595 5.68890 5.75795 5.80543 6.06408 6.24901 6.50343 6.92318 7.11995 8.66200 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.045516 B = 0.007493 C = 0.007207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.014200 B = 3735.950680 C = 3884.224035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.100 3.900 3 C -0.243 4.243 4 C -0.037 4.037 5 C -0.174 4.174 6 C -0.066 4.066 7 C -0.141 4.141 8 C 0.065 3.935 9 N -0.375 5.375 10 N -0.300 5.300 11 C 0.260 3.740 12 C -0.556 4.556 13 H 0.049 0.951 14 C 0.026 3.974 15 N -0.915 5.915 16 Si 0.975 3.025 17 H -0.274 1.274 18 H -0.274 1.274 19 H -0.263 1.263 20 H 0.090 0.910 21 H 0.070 0.930 22 H 0.116 0.884 23 H 0.150 0.850 24 H 0.157 0.843 25 H 0.158 0.842 26 H 0.125 0.875 27 H 0.025 0.975 28 H 0.061 0.939 29 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.277 14.412 0.743 14.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 C -0.252 4.252 4 C -0.057 4.057 5 C -0.194 4.194 6 C -0.087 4.087 7 C -0.163 4.163 8 C -0.087 4.087 9 N -0.203 5.203 10 N -0.073 5.073 11 C 0.142 3.858 12 C -0.594 4.594 13 H 0.067 0.933 14 C -0.176 4.176 15 N -0.553 5.553 16 Si 0.799 3.201 17 H -0.199 1.199 18 H -0.200 1.200 19 H -0.187 1.187 20 H 0.108 0.892 21 H 0.089 0.911 22 H 0.135 0.865 23 H 0.167 0.833 24 H 0.174 0.826 25 H 0.176 0.824 26 H 0.143 0.857 27 H 0.043 0.957 28 H 0.079 0.921 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.674 12.894 0.819 12.938 hybrid contribution -0.201 -0.503 -0.654 0.850 sum -0.875 12.391 0.164 12.423 Atomic orbital electron populations 1.20589 0.84190 1.04885 1.04479 1.22037 0.96400 0.86473 0.99141 1.19749 0.91527 0.95308 1.18655 1.20597 1.00855 0.88494 0.95715 1.20862 0.91709 1.00837 1.05967 1.21010 0.98316 0.93958 0.95463 1.20094 0.96135 0.92063 1.07990 1.21590 0.96286 0.91081 0.99742 1.77601 0.96062 1.13329 1.33328 1.49233 1.03597 1.08422 1.46013 1.19495 0.95095 0.72692 0.98544 1.21340 1.47580 0.99335 0.91134 0.93317 1.25745 0.93657 0.95693 1.02515 1.69998 1.44119 1.08176 1.33022 0.85249 0.78701 0.78069 0.78108 1.19897 1.19984 1.18717 0.89163 0.91091 0.86529 0.83271 0.82583 0.82425 0.85681 0.95651 0.92144 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.56 10.09 71.24 0.72 -1.84 15 2 C 0.10 4.10 6.98 42.23 0.29 4.39 15 3 C -0.24 -9.36 6.26 -20.24 -0.13 -9.49 15 4 C -0.04 -1.03 10.09 22.38 0.23 -0.80 15 5 C -0.17 -4.16 9.90 22.02 0.22 -3.94 15 6 C -0.07 -1.68 9.89 22.01 0.22 -1.46 15 7 C -0.14 -4.87 10.08 22.38 0.23 -4.64 15 8 C 0.06 2.82 7.49 42.16 0.32 3.14 15 9 N -0.37 -19.30 12.54 -48.71 -0.61 -19.91 15 10 N -0.30 -14.96 3.53 -336.73 -1.19 -16.15 15 11 C 0.26 13.95 5.90 85.63 0.50 14.46 15 12 C -0.56 -31.43 9.39 25.60 0.24 -31.19 15 13 H 0.05 2.86 7.81 -2.91 -0.02 2.84 15 14 C 0.03 1.39 5.46 84.65 0.46 1.85 15 15 N -0.92 -51.48 13.29 21.45 0.28 -51.19 15 16 Si 0.98 42.97 29.54 68.60 2.03 45.00 15 17 H -0.27 -12.15 7.11 99.48 0.71 -11.45 15 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 19 H -0.26 -10.81 7.11 99.48 0.71 -10.10 15 20 H 0.09 2.64 8.14 -2.39 -0.02 2.62 15 21 H 0.07 2.27 6.94 -2.39 -0.02 2.25 15 22 H 0.12 2.57 8.14 -2.38 -0.02 2.55 15 23 H 0.15 3.07 8.06 -2.91 -0.02 3.04 15 24 H 0.16 2.42 8.06 -2.91 -0.02 2.39 15 25 H 0.16 2.71 8.06 -2.91 -0.02 2.68 15 26 H 0.13 3.96 8.06 -2.91 -0.02 3.93 15 27 H 0.03 1.49 8.14 -2.39 -0.02 1.47 15 28 H 0.06 3.13 6.89 -2.39 -0.02 3.11 15 29 H 0.28 14.37 8.31 -92.71 -0.77 13.60 15 Total: -1.00 -68.89 258.36 4.95 -63.94 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 1.14 Total: 7.83 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 3.30 Total: -29.52 kcal Atomic # 7 Polarization: -85.74 SS G_CDS: -1.52 Total: -87.26 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -68.89 4.95 -63.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261180299.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.825 kcal (2) G-P(sol) polarization free energy of solvation -68.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds