Wall clock time and date at job start Mon Mar 30 2020 20:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37145 * 126.01869 * 2 1 4 4 C 1.47069 * 106.74886 * 180.12784 * 3 2 1 5 5 C 1.40986 * 118.76503 * 179.80562 * 4 3 2 6 6 C 1.37476 * 120.72138 * 359.75031 * 5 4 3 7 7 C 1.38135 * 122.60003 * 359.97438 * 6 5 4 8 8 C 1.40473 * 121.11053 * 0.02562 * 7 6 5 9 9 C 1.40133 * 120.77243 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00657 * 209.10891 * 9 8 7 11 11 C 1.40075 * 119.99569 * 29.11006 * 9 8 7 12 12 N 1.30788 * 120.00451 * 24.68353 * 11 9 8 13 13 Si 1.86801 * 119.99793 * 204.68340 * 11 9 8 14 14 H 1.48505 * 109.47255 * 269.99986 * 13 11 9 15 15 H 1.48503 * 109.47418 * 30.00028 * 13 11 9 16 16 H 1.48499 * 109.47083 * 149.99972 * 13 11 9 17 17 N 1.32219 * 106.69829 * 359.62094 * 4 3 2 18 18 N 1.34600 * 126.01692 * 179.70706 * 2 1 3 19 19 C 1.46497 * 125.11480 * 0.02562 * 18 2 1 20 20 H 1.08999 * 109.46852 * 275.88288 * 1 2 3 21 21 H 1.08998 * 109.46748 * 35.87762 * 1 2 3 22 22 H 1.08995 * 109.46744 * 155.87887 * 1 2 3 23 23 H 1.07997 * 119.63483 * 179.72254 * 5 4 3 24 24 H 1.08005 * 118.70154 * 179.97438 * 6 5 4 25 25 H 1.08005 * 119.44442 * 180.02562 * 7 6 5 26 26 H 0.97001 * 119.99086 * 6.72480 * 12 11 9 27 27 H 1.08998 * 109.47167 * 270.00257 * 19 18 2 28 28 H 1.09002 * 109.47102 * 29.99877 * 19 18 2 29 29 H 1.08998 * 109.47250 * 149.99965 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3135 1.1093 0.0000 4 6 3.7018 0.6239 -0.0031 5 6 4.7501 1.5667 -0.0080 6 6 4.4820 2.9150 -0.0149 7 6 3.1955 3.4180 -0.0180 8 6 2.0816 2.5622 -0.0136 9 6 0.7795 3.0802 -0.0163 10 1 -0.0244 2.5230 0.4416 11 6 0.5206 4.3209 -0.6128 12 7 1.3090 4.7712 -1.5542 13 14 -0.9508 5.3323 -0.0636 14 1 -2.1344 4.9702 -0.8842 15 1 -1.2365 5.0544 1.3669 16 1 -0.6512 6.7764 -0.2371 17 7 3.6425 -0.6969 0.0036 18 7 2.2985 -1.0887 0.0056 19 6 1.8247 -2.4749 0.0121 20 1 -0.3633 0.1053 1.0223 21 1 -0.3633 0.8327 -0.6023 22 1 -0.3632 -0.9379 -0.4200 23 1 5.7749 1.2258 -0.0058 24 1 5.3100 3.6085 -0.0180 25 1 3.0436 4.4873 -0.0239 26 1 2.0140 4.2064 -1.9076 27 1 1.7068 -2.8137 1.0414 28 1 0.8653 -2.5334 -0.5018 29 1 2.5496 -3.1090 -0.4984 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261193147.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:17 Heat of formation + Delta-G solvation = 71.643101 kcal Electronic energy + Delta-G solvation = -14046.146488 eV Core-core repulsion = 11741.960014 eV Total energy + Delta-G solvation = -2304.186474 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.97398 -36.18568 -33.97157 -31.79922 -31.18043 -28.85954 -26.52721 -25.86165 -24.66796 -21.35519 -20.44836 -18.97436 -17.07317 -16.02708 -15.53666 -14.91890 -14.27913 -14.06908 -13.58027 -12.96808 -12.78186 -12.47992 -12.26460 -12.05047 -11.67590 -11.46401 -11.25751 -10.58916 -10.52325 -10.33144 -10.01755 -9.80427 -9.31566 -8.89135 -8.60666 -7.58049 -7.27855 -6.57524 -4.48353 1.94816 2.99744 3.07464 3.24944 3.32498 3.33187 3.62080 3.85613 4.54089 5.04348 5.32303 5.41310 5.45422 5.55096 5.69986 5.88007 6.00598 6.34418 6.45756 6.48942 6.81773 6.89825 7.03891 7.33652 7.41989 7.59339 7.79944 7.96617 8.06753 8.22774 8.28391 8.59159 8.70050 9.00669 9.81226 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.031506 B = 0.011202 C = 0.008572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.516692 B = 2498.879739 C = 3265.666695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.098 3.902 3 C -0.223 4.223 4 C 0.157 3.843 5 C -0.300 4.300 6 C 0.005 3.995 7 C -0.334 4.334 8 C 0.161 3.839 9 C -0.475 4.475 10 H 0.086 0.914 11 C 0.035 3.965 12 N -0.764 5.764 13 Si 1.066 2.934 14 H -0.274 1.274 15 H -0.272 1.272 16 H -0.270 1.270 17 N -0.372 5.372 18 N -0.375 5.375 19 C 0.107 3.893 20 H 0.073 0.927 21 H 0.094 0.906 22 H 0.056 0.944 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.100 0.900 26 H 0.309 0.691 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.691 -4.926 1.538 7.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.033 4.033 3 C -0.234 4.234 4 C 0.005 3.995 5 C -0.324 4.324 6 C -0.017 4.017 7 C -0.355 4.355 8 C 0.156 3.844 9 C -0.502 4.502 10 H 0.104 0.896 11 C -0.191 4.191 12 N -0.385 5.385 13 Si 0.889 3.111 14 H -0.200 1.200 15 H -0.197 1.197 16 H -0.195 1.195 17 N -0.199 5.199 18 N -0.153 5.153 19 C -0.035 4.035 20 H 0.092 0.908 21 H 0.112 0.888 22 H 0.075 0.925 23 H 0.108 0.892 24 H 0.106 0.894 25 H 0.118 0.882 26 H 0.123 0.877 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.759 -4.770 1.268 7.585 hybrid contribution 0.509 -0.917 0.176 1.064 sum -5.250 -5.687 1.444 7.873 Atomic orbital electron populations 1.20501 0.88075 1.02848 1.03017 1.20698 0.93445 0.87263 1.01849 1.20599 0.91965 0.93726 1.17097 1.20738 0.94157 0.90106 0.94515 1.18955 0.94224 0.90776 1.28451 1.20171 0.95794 0.93561 0.92143 1.20357 0.91334 0.97699 1.26120 1.17920 0.93224 0.87065 0.86192 1.20702 0.95357 1.04081 1.30070 0.89621 1.27234 1.02545 0.96043 0.93307 1.70332 1.13049 1.39340 1.15795 0.83622 0.73678 0.76644 0.77173 1.19972 1.19695 1.19477 1.77548 0.92385 1.12426 1.37511 1.48126 1.04573 1.04782 1.57828 1.21596 0.99903 0.79770 1.02258 0.90801 0.88781 0.92504 0.89227 0.89415 0.88224 0.87714 0.91771 0.90448 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.45 9.09 36.01 0.33 -1.12 15 2 C 0.10 2.15 6.96 -81.77 -0.57 1.58 15 3 C -0.22 -5.77 6.31 -103.10 -0.65 -6.42 15 4 C 0.16 4.17 7.48 -83.08 -0.62 3.55 15 5 C -0.30 -7.68 10.09 -38.82 -0.39 -8.08 15 6 C 0.01 0.14 9.86 -39.90 -0.39 -0.26 15 7 C -0.33 -8.75 7.97 -38.78 -0.31 -9.06 15 8 C 0.16 4.25 5.36 -104.73 -0.56 3.69 15 9 C -0.47 -11.66 8.04 -38.18 -0.31 -11.96 15 10 H 0.09 1.95 6.32 -52.49 -0.33 1.62 15 11 C 0.03 0.82 4.92 -17.31 -0.09 0.73 15 12 N -0.76 -19.21 12.41 55.55 0.69 -18.52 15 13 Si 1.07 19.70 30.00 -169.99 -5.10 14.60 15 14 H -0.27 -4.77 7.11 56.52 0.40 -4.36 15 15 H -0.27 -4.83 7.11 56.52 0.40 -4.43 15 16 H -0.27 -5.02 7.11 56.52 0.40 -4.62 15 17 N -0.37 -9.31 12.56 33.23 0.42 -8.89 15 18 N -0.37 -7.93 3.97 -63.50 -0.25 -8.18 15 19 C 0.11 1.54 11.18 59.85 0.67 2.21 15 20 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 21 H 0.09 1.67 6.63 -51.93 -0.34 1.32 15 22 H 0.06 0.75 6.82 -51.93 -0.35 0.40 15 23 H 0.09 2.14 8.06 -52.49 -0.42 1.72 15 24 H 0.09 1.91 8.06 -52.48 -0.42 1.48 15 25 H 0.10 2.64 6.73 -52.48 -0.35 2.28 15 26 H 0.31 8.13 6.86 -40.82 -0.28 7.85 15 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 15 28 H 0.08 0.89 6.85 -51.93 -0.36 0.53 15 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 LS Contribution 248.28 15.07 3.74 3.74 Total: -1.00 -30.51 248.28 -6.32 -36.83 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -2.93 Total: 5.56 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: -2.89 Total: -25.13 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.85 Total: -35.60 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.10 Total: 14.60 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.51 -6.32 -36.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261193147.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.477 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds